Protein–RNA interactions for Protein: Q9NY46

SCN3A, Sodium channel protein type 3 subunit alpha, humanhuman

Predictions only

Length 2,000 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN3AQ9NY46 OR11H5P-201ENST00000554039 926 ntBASIC1.88□□□□□ -2.11
SCN3AQ9NY46 AL133507.1-201ENST00000605269 557 ntBASIC1.88□□□□□ -2.11
SCN3AQ9NY46 CLECL1-204ENST00000621400 611 ntAPPRIS ALT2 TSL 5 BASIC1.88□□□□□ -2.11
SCN3AQ9NY46 HS1BP3-208ENST00000631166 78 ntTSL 5 BASIC1.88□□□□□ -2.11
SCN3AQ9NY46 MLF1-203ENST00000392822 2157 ntTSL 5 BASIC1.87□□□□□ -2.11
SCN3AQ9NY46 MYSM1-208ENST00000622766 6020 ntTSL 1 (best) BASIC1.87□□□□□ -2.11
SCN3AQ9NY46 FGF7-201ENST00000267843 5467 ntAPPRIS P1 TSL 1 (best) BASIC1.87□□□□□ -2.11
SCN3AQ9NY46 AC090740.1-201ENST00000623193 2262 ntBASIC1.87□□□□□ -2.11
SCN3AQ9NY46 CUBN-201ENST00000377823 705 ntTSL 3 BASIC1.87□□□□□ -2.11
SCN3AQ9NY46 RNU6-1027P-201ENST00000383998 107 ntBASIC1.87□□□□□ -2.11
SCN3AQ9NY46 MIR767-201ENST00000390228 109 ntBASIC1.87□□□□□ -2.11
SCN3AQ9NY46 LHFPL3-AS1-203ENST00000417290 950 ntTSL 1 (best) BASIC1.87□□□□□ -2.11
SCN3AQ9NY46 AP000695.2-201ENST00000428667 715 ntTSL 5 BASIC1.87□□□□□ -2.11
SCN3AQ9NY46 LINC01307-201ENST00000439146 474 ntTSL 3 BASIC1.87□□□□□ -2.11
SCN3AQ9NY46 RPS26P56-201ENST00000444468 240 ntBASIC1.87□□□□□ -2.11
SCN3AQ9NY46 AC004872.1-201ENST00000456062 469 ntTSL 3 BASIC1.87□□□□□ -2.11
SCN3AQ9NY46 RPL21P39-201ENST00000463605 483 ntBASIC1.87□□□□□ -2.11
SCN3AQ9NY46 RPL21P99-201ENST00000480369 423 ntBASIC1.87□□□□□ -2.11
SCN3AQ9NY46 HMGB1P22-201ENST00000505315 124 ntBASIC1.87□□□□□ -2.11
SCN3AQ9NY46 AC093879.2-201ENST00000513645 427 ntTSL 3 BASIC1.87□□□□□ -2.11
SCN3AQ9NY46 CLEC2D-214ENST00000543300 399 ntTSL 1 (best) BASIC1.87□□□□□ -2.11
SCN3AQ9NY46 PARPBP-212ENST00000543784 992 ntTSL 2 BASIC1.87□□□□□ -2.11
SCN3AQ9NY46 CLEC2D-216ENST00000545918 288 ntTSL 1 (best) BASIC1.87□□□□□ -2.11
SCN3AQ9NY46 AC015727.1-201ENST00000572792 512 ntTSL 5 BASIC1.87□□□□□ -2.11
SCN3AQ9NY46 AC097717.1-211ENST00000600604 687 ntTSL 5 BASIC1.87□□□□□ -2.11
SCN3AQ9NY46 AL110115.1-201ENST00000614396 364 ntBASIC1.87□□□□□ -2.11
SCN3AQ9NY46 MIR6132-201ENST00000622083 109 ntBASIC1.87□□□□□ -2.11
SCN3AQ9NY46 AC090897.3-201ENST00000636973 1157 ntBASIC1.87□□□□□ -2.11
SCN3AQ9NY46 ZBED5-201ENST00000413761 2512 ntAPPRIS P1 TSL 1 (best) BASIC1.87□□□□□ -2.11
SCN3AQ9NY46 ZNF85-203ENST00000345030 1689 ntAPPRIS ALT2 TSL 5 BASIC1.87□□□□□ -2.11
SCN3AQ9NY46 SPAM1-202ENST00000340011 2349 ntAPPRIS P4 TSL 1 (best) BASIC1.87□□□□□ -2.11
SCN3AQ9NY46 PABPC1P9-201ENST00000426076 1612 ntBASIC1.87□□□□□ -2.11
SCN3AQ9NY46 AL050331.3-201ENST00000448740 2081 ntTSL 2 BASIC1.86□□□□□ -2.11
SCN3AQ9NY46 AC138915.1-201ENST00000565427 1685 ntBASIC1.86□□□□□ -2.11
SCN3AQ9NY46 RPS4XP3-201ENST00000398541 413 ntBASIC1.86□□□□□ -2.11
SCN3AQ9NY46 AL513477.1-202ENST00000417061 214 ntBASIC1.86□□□□□ -2.11
SCN3AQ9NY46 AC233981.1-201ENST00000423224 461 ntBASIC1.86□□□□□ -2.11
SCN3AQ9NY46 LINC01078-201ENST00000434832 387 ntTSL 5 BASIC1.86□□□□□ -2.11
SCN3AQ9NY46 AL513321.1-201ENST00000441175 761 ntBASIC1.86□□□□□ -2.11
SCN3AQ9NY46 AC073174.1-201ENST00000444155 415 ntTSL 5 BASIC1.86□□□□□ -2.11
SCN3AQ9NY46 BIRC6-AS1-201ENST00000455572 697 ntTSL 3 BASIC1.86□□□□□ -2.11
SCN3AQ9NY46 MTND4P2-201ENST00000507767 1203 ntBASIC1.86□□□□□ -2.11
SCN3AQ9NY46 SNORA31.20-201ENST00000517111 133 ntBASIC1.86□□□□□ -2.11
SCN3AQ9NY46 RNU6-889P-201ENST00000517189 103 ntBASIC1.86□□□□□ -2.11
SCN3AQ9NY46 LINC00824-201ENST00000517583 805 ntTSL 5 BASIC1.86□□□□□ -2.11
SCN3AQ9NY46 AC021698.1-201ENST00000524858 716 ntTSL 3 BASIC1.86□□□□□ -2.11
SCN3AQ9NY46 AC015771.1-201ENST00000527283 554 ntTSL 4 BASIC1.86□□□□□ -2.11
SCN3AQ9NY46 AC012254.1-201ENST00000592747 200 ntTSL 3 BASIC1.86□□□□□ -2.11
SCN3AQ9NY46 AL009028.1-201ENST00000604895 802 ntBASIC1.86□□□□□ -2.11
SCN3AQ9NY46 AC242628.1-201ENST00000606810 391 ntBASIC1.86□□□□□ -2.11
SCN3AQ9NY46 MIR7843-201ENST00000622274 79 ntBASIC1.86□□□□□ -2.11
SCN3AQ9NY46 SMIM18-202ENST00000626298 114 ntTSL 5 BASIC1.86□□□□□ -2.11
SCN3AQ9NY46 OR5H6-202ENST00000641416 1032 ntAPPRIS P1 BASIC1.86□□□□□ -2.11
SCN3AQ9NY46 CKAP2P1-201ENST00000555477 2049 ntBASIC1.86□□□□□ -2.11
SCN3AQ9NY46 NETO1-202ENST00000397929 1849 ntTSL 1 (best) BASIC1.86□□□□□ -2.11
SCN3AQ9NY46 ZNF519P1-201ENST00000449011 1626 ntBASIC1.86□□□□□ -2.11
SCN3AQ9NY46 RNU6-152P-201ENST00000384037 107 ntBASIC1.86□□□□□ -2.11
SCN3AQ9NY46 ANAPC10P1-201ENST00000395991 556 ntBASIC1.86□□□□□ -2.11
SCN3AQ9NY46 AC093382.1-201ENST00000413311 379 ntTSL 5 BASIC1.86□□□□□ -2.11
SCN3AQ9NY46 AL590727.1-201ENST00000418652 771 ntTSL 2 BASIC1.86□□□□□ -2.11
SCN3AQ9NY46 AL137789.1-201ENST00000439443 682 ntTSL 3 BASIC1.86□□□□□ -2.11
SCN3AQ9NY46 AC008080.4-202ENST00000440034 1005 ntTSL 3 BASIC1.86□□□□□ -2.11
SCN3AQ9NY46 LINC00440-201ENST00000446579 734 ntTSL 5 BASIC1.86□□□□□ -2.11
SCN3AQ9NY46 MTAPP1-201ENST00000489154 819 ntBASIC1.86□□□□□ -2.11
SCN3AQ9NY46 FAM92A1P1-201ENST00000528023 890 ntBASIC1.86□□□□□ -2.11
SCN3AQ9NY46 TTN-AS1-212ENST00000582847 1036 ntTSL 5 BASIC1.86□□□□□ -2.11
SCN3AQ9NY46 AC009314.1-201ENST00000603871 304 ntBASIC1.86□□□□□ -2.11
SCN3AQ9NY46 AC024595.1-201ENST00000623088 387 ntBASIC1.86□□□□□ -2.11
SCN3AQ9NY46 SNORD114-1-201ENST00000362705 72 ntBASIC1.85□□□□□ -2.11
SCN3AQ9NY46 TRAV24-201ENST00000390453 343 ntAPPRIS P1 BASIC1.85□□□□□ -2.11
SCN3AQ9NY46 TRAJ31-201ENST00000390506 57 ntAPPRIS P1 BASIC1.85□□□□□ -2.11
SCN3AQ9NY46 RPL21P75-201ENST00000396599 483 ntBASIC1.85□□□□□ -2.11
SCN3AQ9NY46 RPL21P28-201ENST00000401418 483 ntBASIC1.85□□□□□ -2.11
SCN3AQ9NY46 AL592114.1-201ENST00000403842 483 ntBASIC1.85□□□□□ -2.11
SCN3AQ9NY46 MIR1303-201ENST00000408625 86 ntBASIC1.85□□□□□ -2.11
SCN3AQ9NY46 AL078645.1-201ENST00000414377 423 ntTSL 3 BASIC1.85□□□□□ -2.11
SCN3AQ9NY46 AC008173.1-201ENST00000418901 264 ntBASIC1.85□□□□□ -2.11
SCN3AQ9NY46 RPS15AP40-201ENST00000419621 391 ntBASIC1.85□□□□□ -2.11
SCN3AQ9NY46 RPS15AP7-201ENST00000439294 405 ntBASIC1.85□□□□□ -2.11
SCN3AQ9NY46 AL109741.2-201ENST00000455561 343 ntBASIC1.85□□□□□ -2.11
SCN3AQ9NY46 AL031183.1-201ENST00000457667 207 ntBASIC1.85□□□□□ -2.11
SCN3AQ9NY46 RNU6-717P-201ENST00000459076 104 ntBASIC1.85□□□□□ -2.11
SCN3AQ9NY46 AC011979.1-201ENST00000472300 483 ntBASIC1.85□□□□□ -2.11
SCN3AQ9NY46 RPL21P93-201ENST00000480465 489 ntBASIC1.85□□□□□ -2.11
SCN3AQ9NY46 AC233702.1-201ENST00000482905 502 ntBASIC1.85□□□□□ -2.11
SCN3AQ9NY46 NCOR1P1-202ENST00000486162 291 ntBASIC1.85□□□□□ -2.11
SCN3AQ9NY46 AC007182.2-201ENST00000489251 402 ntBASIC1.85□□□□□ -2.11
SCN3AQ9NY46 AC093591.1-201ENST00000491435 481 ntBASIC1.85□□□□□ -2.11
SCN3AQ9NY46 RPL21P16-201ENST00000495531 483 ntBASIC1.85□□□□□ -2.11
SCN3AQ9NY46 BMPR1B-AS1-201ENST00000510795 511 ntTSL 3 BASIC1.85□□□□□ -2.11
SCN3AQ9NY46 RANP3-201ENST00000530970 276 ntBASIC1.85□□□□□ -2.11
SCN3AQ9NY46 CASP1-212ENST00000531166 300 ntTSL 5 BASIC1.85□□□□□ -2.11
SCN3AQ9NY46 LINC01479-201ENST00000545520 509 ntTSL 2 BASIC1.85□□□□□ -2.11
SCN3AQ9NY46 RPS3AP23-202ENST00000574601 686 ntBASIC1.85□□□□□ -2.11
SCN3AQ9NY46 YWHAQP7-201ENST00000603536 658 ntBASIC1.85□□□□□ -2.11
SCN3AQ9NY46 CNBD1-207ENST00000620844 876 ntAPPRIS ALT2 TSL 5 BASIC1.85□□□□□ -2.11
SCN3AQ9NY46 RNA5SP393-201ENST00000363423 117 ntBASIC1.84□□□□□ -2.11
SCN3AQ9NY46 MIR1289-2-201ENST00000408360 111 ntBASIC1.84□□□□□ -2.11
SCN3AQ9NY46 RNA5SP338-201ENST00000410495 85 ntBASIC1.84□□□□□ -2.11
SCN3AQ9NY46 AC092745.2-202ENST00000411880 369 ntBASIC1.84□□□□□ -2.11
Retrieved 100 of 98,524 protein–RNA pairs in 115.1 ms