Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 AL357559.1-201ENST00000622228 274 ntBASIC3.15□□□□□ -1.91
NKX3-1Q99801 PCBP1-AS1-348ENST00000629506 667 ntTSL 5 BASIC3.15□□□□□ -1.91
NKX3-1Q99801 AC090582.1-201ENST00000636321 199 ntBASIC3.15□□□□□ -1.91
NKX3-1Q99801 CASP1-210ENST00000528974 1402 ntTSL 2 BASIC3.15□□□□□ -1.91
NKX3-1Q99801 PPHLN1-208ENST00000449194 1583 ntAPPRIS ALT1 TSL 1 (best) BASIC3.15□□□□□ -1.91
NKX3-1Q99801 FASTKD1-205ENST00000453929 2791 ntTSL 2 BASIC3.15□□□□□ -1.91
NKX3-1Q99801 GLCE-202ENST00000559420 4840 ntTSL 1 (best) BASIC3.15□□□□□ -1.91
NKX3-1Q99801 IQCH-201ENST00000335894 4208 ntAPPRIS P1 TSL 1 (best) BASIC3.14□□□□□ -1.91
NKX3-1Q99801 FIGNL1-202ENST00000395556 3485 ntAPPRIS P1 TSL 2 BASIC3.14□□□□□ -1.91
NKX3-1Q99801 WDR49-201ENST00000308378 2594 ntAPPRIS P2 TSL 1 (best) BASIC3.14□□□□□ -1.91
NKX3-1Q99801 HELZ-201ENST00000358691 13810 ntTSL 1 (best) BASIC3.14□□□□□ -1.91
NKX3-1Q99801 ZNF726-205ENST00000575986 1522 ntTSL 1 (best) BASIC3.14□□□□□ -1.91
NKX3-1Q99801 VIM-AS1-201ENST00000437232 1351 ntTSL 2 BASIC3.14□□□□□ -1.91
NKX3-1Q99801 ERBIN-201ENST00000284037 8647 ntTSL 1 (best) BASIC3.14□□□□□ -1.91
NKX3-1Q99801 CHM-205ENST00000615443 2821 ntTSL 1 (best) BASIC3.14□□□□□ -1.91
NKX3-1Q99801 USP8P1-201ENST00000494673 3183 ntBASIC3.14□□□□□ -1.91
NKX3-1Q99801 RNA5SP42-201ENST00000364278 115 ntBASIC3.14□□□□□ -1.91
NKX3-1Q99801 RNU6-213P-201ENST00000384051 104 ntBASIC3.14□□□□□ -1.91
NKX3-1Q99801 Y_RNA.436-201ENST00000384097 102 ntBASIC3.14□□□□□ -1.91
NKX3-1Q99801 MIR184-201ENST00000384962 84 ntBASIC3.14□□□□□ -1.91
NKX3-1Q99801 MIR200C-201ENST00000384980 68 ntBASIC3.14□□□□□ -1.91
NKX3-1Q99801 MIR670-201ENST00000390142 98 ntBASIC3.14□□□□□ -1.91
NKX3-1Q99801 TRAJ32-201ENST00000390505 66 ntAPPRIS P1 BASIC3.14□□□□□ -1.91
NKX3-1Q99801 SNORA57.3-201ENST00000411095 141 ntBASIC3.14□□□□□ -1.91
NKX3-1Q99801 RPL17P12-201ENST00000413391 526 ntBASIC3.14□□□□□ -1.91
NKX3-1Q99801 RPS7P15-201ENST00000415804 584 ntBASIC3.14□□□□□ -1.91
NKX3-1Q99801 USP9YP13-201ENST00000417797 480 ntBASIC3.14□□□□□ -1.91
NKX3-1Q99801 RPL9P9-201ENST00000418824 636 ntTSL 2 BASIC3.14□□□□□ -1.91
NKX3-1Q99801 AL096799.1-201ENST00000425900 381 ntTSL 2 BASIC3.14□□□□□ -1.91
NKX3-1Q99801 AC020571.1-201ENST00000430904 768 ntTSL 2 BASIC3.14□□□□□ -1.91
NKX3-1Q99801 AL445584.1-201ENST00000431451 330 ntBASIC3.14□□□□□ -1.91
NKX3-1Q99801 AC093019.2-201ENST00000432294 384 ntTSL 3 BASIC3.14□□□□□ -1.91
NKX3-1Q99801 AC007389.2-201ENST00000434630 306 ntBASIC3.14□□□□□ -1.91
NKX3-1Q99801 AL031667.1-201ENST00000440222 725 ntBASIC3.14□□□□□ -1.91
NKX3-1Q99801 AC092641.1-201ENST00000440229 772 ntBASIC3.14□□□□□ -1.91
NKX3-1Q99801 AL451164.2-201ENST00000445932 597 ntTSL 2 BASIC3.14□□□□□ -1.91
NKX3-1Q99801 ST13P20-201ENST00000447996 1065 ntBASIC3.14□□□□□ -1.91
NKX3-1Q99801 AC074327.1-201ENST00000448017 540 ntTSL 2 BASIC3.14□□□□□ -1.91
NKX3-1Q99801 AC010655.1-201ENST00000449336 292 ntBASIC3.14□□□□□ -1.91
NKX3-1Q99801 LINC00374-201ENST00000454780 800 ntTSL 3 BASIC3.14□□□□□ -1.91
NKX3-1Q99801 AL390730.1-201ENST00000457106 692 ntTSL 2 BASIC3.14□□□□□ -1.91
NKX3-1Q99801 AC107021.1-202ENST00000480247 555 ntTSL 5 BASIC3.14□□□□□ -1.91
NKX3-1Q99801 RPL21P129-201ENST00000491732 478 ntBASIC3.14□□□□□ -1.91
NKX3-1Q99801 RPL23AP55-201ENST00000498163 452 ntBASIC3.14□□□□□ -1.91
NKX3-1Q99801 SLC25A15P5-201ENST00000508033 253 ntBASIC3.14□□□□□ -1.91
NKX3-1Q99801 LINC02113-201ENST00000510302 336 ntTSL 3 BASIC3.14□□□□□ -1.91
NKX3-1Q99801 AC079160.1-201ENST00000513489 739 ntTSL 1 (best) BASIC3.14□□□□□ -1.91
NKX3-1Q99801 FABP5P5-201ENST00000515537 406 ntBASIC3.14□□□□□ -1.91
NKX3-1Q99801 AC009623.2-201ENST00000522524 465 ntTSL 3 BASIC3.14□□□□□ -1.91
NKX3-1Q99801 AC055720.1-201ENST00000539552 475 ntTSL 5 BASIC3.14□□□□□ -1.91
NKX3-1Q99801 AC087499.8-201ENST00000578406 226 ntBASIC3.14□□□□□ -1.91
NKX3-1Q99801 MIR5047-201ENST00000579212 100 ntBASIC3.14□□□□□ -1.91
NKX3-1Q99801 AP005271.1-201ENST00000582470 412 ntTSL 3 BASIC3.14□□□□□ -1.91
NKX3-1Q99801 AC103987.2-201ENST00000583436 417 ntTSL 2 BASIC3.14□□□□□ -1.91
NKX3-1Q99801 LINC00907-211ENST00000601948 795 ntTSL 5 BASIC3.14□□□□□ -1.91
NKX3-1Q99801 AC015871.2-201ENST00000603605 948 ntBASIC3.14□□□□□ -1.91
NKX3-1Q99801 RNF219-AS1-205ENST00000605996 792 ntTSL 5 BASIC3.14□□□□□ -1.91
NKX3-1Q99801 AC090425.2-201ENST00000608818 501 ntBASIC3.14□□□□□ -1.91
NKX3-1Q99801 AL355472.4-201ENST00000610233 626 ntBASIC3.14□□□□□ -1.91
NKX3-1Q99801 AL592295.2-201ENST00000612578 206 ntBASIC3.14□□□□□ -1.91
NKX3-1Q99801 AC009878.1-201ENST00000621819 340 ntBASIC3.14□□□□□ -1.91
NKX3-1Q99801 NRDE2-210ENST00000628832 132 ntTSL 5 BASIC3.14□□□□□ -1.91
NKX3-1Q99801 FAM71D-211ENST00000612183 1790 ntAPPRIS P1 TSL 2 BASIC3.14□□□□□ -1.91
NKX3-1Q99801 AP004289.2-201ENST00000444413 1457 ntBASIC3.14□□□□□ -1.91
NKX3-1Q99801 AC024560.2-201ENST00000507981 1497 ntBASIC3.14□□□□□ -1.91
NKX3-1Q99801 CHORDC1-206ENST00000529987 1698 ntTSL 3 BASIC3.14□□□□□ -1.91
NKX3-1Q99801 EVI2B-202ENST00000577894 1597 ntAPPRIS P1 TSL 2 BASIC3.13□□□□□ -1.91
NKX3-1Q99801 AC092104.1-201ENST00000497346 1441 ntBASIC3.13□□□□□ -1.91
NKX3-1Q99801 BLM-208ENST00000560509 3966 ntTSL 1 (best) BASIC3.13□□□□□ -1.91
NKX3-1Q99801 TTTY13-201ENST00000330337 659 ntTSL 1 (best) BASIC3.13□□□□□ -1.91
NKX3-1Q99801 CXorf65-201ENST00000374251 601 ntAPPRIS P1 TSL 5 BASIC3.13□□□□□ -1.91
NKX3-1Q99801 RNU6-1074P-201ENST00000383995 104 ntBASIC3.13□□□□□ -1.91
NKX3-1Q99801 SNORD3H-201ENST00000384486 214 ntBASIC3.13□□□□□ -1.91
NKX3-1Q99801 TRAJ18-201ENST00000390519 66 ntAPPRIS P1 BASIC3.13□□□□□ -1.91
NKX3-1Q99801 TRAJ16-201ENST00000390521 60 ntAPPRIS P1 BASIC3.13□□□□□ -1.91
NKX3-1Q99801 U3.20-201ENST00000390909 217 ntBASIC3.13□□□□□ -1.91
NKX3-1Q99801 PTMAP2-201ENST00000397627 327 ntBASIC3.13□□□□□ -1.91
NKX3-1Q99801 LINC02337-201ENST00000401043 374 ntTSL 3 BASIC3.13□□□□□ -1.91
NKX3-1Q99801 RN7SKP156-201ENST00000410308 342 ntBASIC3.13□□□□□ -1.91
NKX3-1Q99801 OR1AA1P-201ENST00000419597 916 ntBASIC3.13□□□□□ -1.91
NKX3-1Q99801 LINC01204-201ENST00000422047 639 ntTSL 3 BASIC3.13□□□□□ -1.91
NKX3-1Q99801 AL357375.1-201ENST00000424274 525 ntTSL 3 BASIC3.13□□□□□ -1.91
NKX3-1Q99801 AC006989.1-201ENST00000427212 131 ntBASIC3.13□□□□□ -1.91
NKX3-1Q99801 AL589823.1-201ENST00000429577 183 ntBASIC3.13□□□□□ -1.91
NKX3-1Q99801 DLGAP5P1-201ENST00000430307 464 ntBASIC3.13□□□□□ -1.91
NKX3-1Q99801 AL353706.1-201ENST00000436728 494 ntBASIC3.13□□□□□ -1.91
NKX3-1Q99801 AC012070.1-201ENST00000442062 427 ntTSL 3 BASIC3.13□□□□□ -1.91
NKX3-1Q99801 AL022238.1-201ENST00000442557 355 ntBASIC3.13□□□□□ -1.91
NKX3-1Q99801 LINC02195-201ENST00000443373 294 ntTSL 3 BASIC3.13□□□□□ -1.91
NKX3-1Q99801 USP9YP12-201ENST00000450481 570 ntBASIC3.13□□□□□ -1.91
NKX3-1Q99801 RNA5SP269-201ENST00000459032 137 ntBASIC3.13□□□□□ -1.91
NKX3-1Q99801 AL049830.2-201ENST00000480072 201 ntBASIC3.13□□□□□ -1.91
NKX3-1Q99801 AC116616.1-201ENST00000508815 366 ntTSL 3 BASIC3.13□□□□□ -1.91
NKX3-1Q99801 AC005699.1-201ENST00000510095 555 ntTSL 3 BASIC3.13□□□□□ -1.91
NKX3-1Q99801 RNU6-1003P-201ENST00000517099 105 ntBASIC3.13□□□□□ -1.91
NKX3-1Q99801 AC007991.1-201ENST00000522680 631 ntBASIC3.13□□□□□ -1.91
NKX3-1Q99801 AP002768.1-201ENST00000526741 320 ntTSL 3 BASIC3.13□□□□□ -1.91
NKX3-1Q99801 AC108471.2-204ENST00000526807 784 ntTSL 5 BASIC3.13□□□□□ -1.91
NKX3-1Q99801 AL136146.2-201ENST00000534594 494 ntTSL 2 BASIC3.13□□□□□ -1.91
NKX3-1Q99801 LINC02384-205ENST00000539404 785 ntTSL 3 BASIC3.13□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 140.2 ms