Protein–RNA interactions for Protein: Q99567

NUP88, Nuclear pore complex protein Nup88, humanhuman

Predicted RBP Predictions only

Length 741 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88Q99567 AL358232.1-201ENST00000448030 501 ntBASIC4.53□□□□□ -1.68
NUP88Q99567 HMGB3P22-202ENST00000451823 572 ntBASIC4.53□□□□□ -1.68
NUP88Q99567 AC108751.4-201ENST00000462931 1001 ntTSL 2 BASIC4.53□□□□□ -1.68
NUP88Q99567 AC010285.1-201ENST00000470580 392 ntBASIC4.53□□□□□ -1.68
NUP88Q99567 AC079943.2-201ENST00000488999 716 ntTSL 3 BASIC4.53□□□□□ -1.68
NUP88Q99567 AC105343.1-201ENST00000505586 358 ntTSL 3 BASIC4.53□□□□□ -1.68
NUP88Q99567 MDM4-213ENST00000507825 481 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
NUP88Q99567 LINC02112-202ENST00000512976 464 ntTSL 3 BASIC4.53□□□□□ -1.68
NUP88Q99567 AC112196.1-201ENST00000515092 832 ntTSL 3 BASIC4.53□□□□□ -1.68
NUP88Q99567 SNORA31.20-201ENST00000517111 133 ntBASIC4.53□□□□□ -1.68
NUP88Q99567 MTCO2P4-201ENST00000517968 247 ntBASIC4.53□□□□□ -1.68
NUP88Q99567 AP002768.1-201ENST00000526741 320 ntTSL 3 BASIC4.53□□□□□ -1.68
NUP88Q99567 AP000857.1-201ENST00000532151 543 ntBASIC4.53□□□□□ -1.68
NUP88Q99567 ZNF84-205ENST00000535439 647 ntTSL 5 BASIC4.53□□□□□ -1.68
NUP88Q99567 AP000777.1-201ENST00000541495 355 ntTSL 3 BASIC4.53□□□□□ -1.68
NUP88Q99567 SLC12A1-210ENST00000561031 735 ntTSL 2 BASIC4.53□□□□□ -1.68
NUP88Q99567 EIF1P4-201ENST00000572664 335 ntBASIC4.53□□□□□ -1.68
NUP88Q99567 AC022706.1-202ENST00000585387 540 ntTSL 3 BASIC4.53□□□□□ -1.68
NUP88Q99567 KC877982.1-201ENST00000602313 470 ntBASIC4.53□□□□□ -1.68
NUP88Q99567 AC245014.2-201ENST00000603689 287 ntBASIC4.53□□□□□ -1.68
NUP88Q99567 AC246785.4-201ENST00000605374 287 ntBASIC4.53□□□□□ -1.68
NUP88Q99567 MIR98-201ENST00000606724 119 ntBASIC4.53□□□□□ -1.68
NUP88Q99567 Hammerhead_HH10.1-201ENST00000620658 125 ntBASIC4.53□□□□□ -1.68
NUP88Q99567 AC068880.5-201ENST00000624331 290 ntBASIC4.53□□□□□ -1.68
NUP88Q99567 LRRC77P-213ENST00000637727 880 ntBASIC4.53□□□□□ -1.68
NUP88Q99567 AC099654.12-201ENST00000639868 649 ntBASIC4.53□□□□□ -1.68
NUP88Q99567 AL157396.1-201ENST00000630034 8444 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
NUP88Q99567 AC004925.1-201ENST00000624256 2706 ntBASIC4.53□□□□□ -1.68
NUP88Q99567 MGA-201ENST00000219905 12042 ntAPPRIS P4 TSL 5 BASIC4.53□□□□□ -1.68
NUP88Q99567 LINC02471-203ENST00000641941 4752 ntBASIC4.53□□□□□ -1.68
NUP88Q99567 MTND5P26-201ENST00000426018 1752 ntBASIC4.53□□□□□ -1.69
NUP88Q99567 KCNU1-201ENST00000399881 3695 ntAPPRIS P1 TSL 2 BASIC4.52□□□□□ -1.69
NUP88Q99567 GTPBP8-205ENST00000473129 1518 ntTSL 2 BASIC4.52□□□□□ -1.69
NUP88Q99567 SUCNR1-201ENST00000362032 4181 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
NUP88Q99567 EMSY-215ENST00000533248 3798 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
NUP88Q99567 C1orf141-202ENST00000371006 2053 ntAPPRIS P3 TSL 2 BASIC4.52□□□□□ -1.69
NUP88Q99567 OR10D3-202ENST00000641351 3561 ntAPPRIS P1 BASIC4.52□□□□□ -1.69
NUP88Q99567 DNAJC10-201ENST00000264065 20129 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
NUP88Q99567 RNU5E-1-201ENST00000362477 120 ntBASIC4.52□□□□□ -1.69
NUP88Q99567 RNY1P12-201ENST00000364251 105 ntBASIC4.52□□□□□ -1.69
NUP88Q99567 RNU6-629P-201ENST00000384061 103 ntBASIC4.52□□□□□ -1.69
NUP88Q99567 RNU6-1181P-201ENST00000384191 106 ntBASIC4.52□□□□□ -1.69
NUP88Q99567 RPL23AP32-201ENST00000395315 459 ntBASIC4.52□□□□□ -1.69
NUP88Q99567 RNU2-43P-201ENST00000410306 190 ntBASIC4.52□□□□□ -1.69
NUP88Q99567 TTTY3-201ENST00000417334 344 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
NUP88Q99567 ELOCP4-201ENST00000420090 333 ntBASIC4.52□□□□□ -1.69
NUP88Q99567 AC069157.1-201ENST00000421749 137 ntBASIC4.52□□□□□ -1.69
NUP88Q99567 AL357375.1-201ENST00000424274 525 ntTSL 3 BASIC4.52□□□□□ -1.69
NUP88Q99567 AL157786.1-206ENST00000424422 551 ntTSL 3 BASIC4.52□□□□□ -1.69
NUP88Q99567 TRIM60P10Y-201ENST00000425589 751 ntBASIC4.52□□□□□ -1.69
NUP88Q99567 AL451062.2-201ENST00000427515 271 ntBASIC4.52□□□□□ -1.69
NUP88Q99567 UTS2B-203ENST00000427544 676 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
NUP88Q99567 FCF1P1-201ENST00000432690 571 ntBASIC4.52□□□□□ -1.69
NUP88Q99567 AL512658.1-202ENST00000433486 400 ntTSL 3 BASIC4.52□□□□□ -1.69
NUP88Q99567 AC104850.1-201ENST00000435940 476 ntBASIC4.52□□□□□ -1.69
NUP88Q99567 TIMM9P1-201ENST00000436122 256 ntBASIC4.52□□□□□ -1.69
NUP88Q99567 TRIM60P8Y-201ENST00000436338 762 ntBASIC4.52□□□□□ -1.69
NUP88Q99567 USP9YP7-201ENST00000436723 430 ntBASIC4.52□□□□□ -1.69
NUP88Q99567 AC083863.1-201ENST00000438811 231 ntBASIC4.52□□□□□ -1.69
NUP88Q99567 MIR217HG-201ENST00000446139 900 ntTSL 5 BASIC4.52□□□□□ -1.69
NUP88Q99567 USP9YP32-201ENST00000452432 430 ntBASIC4.52□□□□□ -1.69
NUP88Q99567 RNU7-59P-201ENST00000459101 61 ntBASIC4.52□□□□□ -1.69
NUP88Q99567 RBM43P1-201ENST00000476891 1081 ntBASIC4.52□□□□□ -1.69
NUP88Q99567 AC020893.1-201ENST00000502452 580 ntBASIC4.52□□□□□ -1.69
NUP88Q99567 RPL37P25-201ENST00000507308 276 ntBASIC4.52□□□□□ -1.69
NUP88Q99567 Vault.3-201ENST00000516676 95 ntBASIC4.52□□□□□ -1.69
NUP88Q99567 AC104211.3-201ENST00000518861 270 ntTSL 3 BASIC4.52□□□□□ -1.69
NUP88Q99567 AC104233.2-201ENST00000518922 414 ntTSL 3 BASIC4.52□□□□□ -1.69
NUP88Q99567 AC022695.1-201ENST00000522089 237 ntBASIC4.52□□□□□ -1.69
NUP88Q99567 MTCYBP41-201ENST00000528913 1123 ntBASIC4.52□□□□□ -1.69
NUP88Q99567 C11orf1-204ENST00000530214 599 ntTSL 5 BASIC4.52□□□□□ -1.69
NUP88Q99567 AKAP7-208ENST00000537868 1006 ntTSL 5 BASIC4.52□□□□□ -1.69
NUP88Q99567 AC010546.1-201ENST00000569391 485 ntBASIC4.52□□□□□ -1.69
NUP88Q99567 AP005530.1-201ENST00000572608 567 ntTSL 3 BASIC4.52□□□□□ -1.69
NUP88Q99567 AC004147.3-201ENST00000577709 375 ntTSL 3 BASIC4.52□□□□□ -1.69
NUP88Q99567 ACYP2-208ENST00000606865 674 ntTSL 5 BASIC4.52□□□□□ -1.69
NUP88Q99567 AC128687.2-201ENST00000609657 566 ntBASIC4.52□□□□□ -1.69
NUP88Q99567 AC013476.2-201ENST00000614456 459 ntBASIC4.52□□□□□ -1.69
NUP88Q99567 AC006338.1-201ENST00000618453 749 ntBASIC4.52□□□□□ -1.69
NUP88Q99567 TTTY3B-201ENST00000631331 344 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
NUP88Q99567 CYP3A7-CYP3A51P-201ENST00000611620 1608 ntTSL 5 BASIC4.52□□□□□ -1.69
NUP88Q99567 USH2A-201ENST00000307340 18883 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
NUP88Q99567 SLC6A15-203ENST00000450363 4229 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
NUP88Q99567 FAM208A-202ENST00000431842 7119 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
NUP88Q99567 SLC25A17-202ENST00000402844 2405 ntTSL 2 BASIC4.52□□□□□ -1.69
NUP88Q99567 FKTN-204ENST00000448551 1700 ntTSL 2 BASIC4.52□□□□□ -1.69
NUP88Q99567 XIRP2-204ENST00000409273 12269 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
NUP88Q99567 C6orf10-203ENST00000442822 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC4.51□□□□□ -1.69
NUP88Q99567 TAB3-204ENST00000378932 3698 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
NUP88Q99567 RNY3P13-201ENST00000365542 102 ntBASIC4.51□□□□□ -1.69
NUP88Q99567 Y_RNA.516-201ENST00000384541 124 ntBASIC4.51□□□□□ -1.69
NUP88Q99567 MIR200C-201ENST00000384980 68 ntBASIC4.51□□□□□ -1.69
NUP88Q99567 MIR1251-201ENST00000408552 70 ntBASIC4.51□□□□□ -1.69
NUP88Q99567 FAM230B-202ENST00000415704 396 ntTSL 3 BASIC4.51□□□□□ -1.69
NUP88Q99567 AC009158.1-206ENST00000417476 454 ntTSL 3 BASIC4.51□□□□□ -1.69
NUP88Q99567 RPS3AP44-201ENST00000425466 790 ntBASIC4.51□□□□□ -1.69
NUP88Q99567 NPM1P49-201ENST00000448027 714 ntBASIC4.51□□□□□ -1.69
NUP88Q99567 LINC01201-202ENST00000451431 401 ntTSL 3 BASIC4.51□□□□□ -1.69
NUP88Q99567 RGS5-217ENST00000451759 835 ntTSL 3 BASIC4.51□□□□□ -1.69
NUP88Q99567 AL645939.1-201ENST00000453429 797 ntBASIC4.51□□□□□ -1.69
Retrieved 100 of 98,524 protein–RNA pairs in 186.8 ms