Protein–RNA interactions for Protein: Q96RU2

USP28, Ubiquitin carboxyl-terminal hydrolase 28, humanhuman

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP28Q96RU2 MIR622-201ENST00000638396 96 ntBASIC3.46□□□□□ -1.86
USP28Q96RU2 AL445259.1-201ENST00000587106 2984 ntTSL 5 BASIC3.46□□□□□ -1.86
USP28Q96RU2 DMD-201ENST00000288447 3856 ntTSL 1 (best) BASIC3.46□□□□□ -1.86
USP28Q96RU2 HPGDS-201ENST00000295256 1636 ntAPPRIS P1 TSL 1 (best) BASIC3.45□□□□□ -1.86
USP28Q96RU2 KNTC1-205ENST00000450485 3655 ntTSL 2 BASIC3.45□□□□□ -1.86
USP28Q96RU2 DNAH12-208ENST00000495027 12146 ntAPPRIS P1 TSL 5 BASIC3.45□□□□□ -1.86
USP28Q96RU2 NEB-201ENST00000172853 20634 ntAPPRIS ALT2 TSL 1 (best) BASIC3.45□□□□□ -1.86
USP28Q96RU2 AC008264.2-201ENST00000610193 3731 ntBASIC3.45□□□□□ -1.86
USP28Q96RU2 CCDC169-201ENST00000239859 708 ntAPPRIS P1 TSL 5 BASIC3.45□□□□□ -1.86
USP28Q96RU2 SNORA71.3-201ENST00000362582 128 ntBASIC3.45□□□□□ -1.86
USP28Q96RU2 RNA5SP267-201ENST00000364893 126 ntBASIC3.45□□□□□ -1.86
USP28Q96RU2 RNU6-629P-201ENST00000384061 103 ntBASIC3.45□□□□□ -1.86
USP28Q96RU2 MIR1284-201ENST00000408337 120 ntBASIC3.45□□□□□ -1.86
USP28Q96RU2 Z93403.1-201ENST00000411879 895 ntTSL 5 BASIC3.45□□□□□ -1.86
USP28Q96RU2 TIMM9P2-201ENST00000419324 266 ntBASIC3.45□□□□□ -1.86
USP28Q96RU2 AC009969.1-201ENST00000438726 172 ntBASIC3.45□□□□□ -1.86
USP28Q96RU2 AC118469.1-201ENST00000442943 488 ntBASIC3.45□□□□□ -1.86
USP28Q96RU2 PLCB1-IT1-202ENST00000451443 251 ntTSL 3 BASIC3.45□□□□□ -1.86
USP28Q96RU2 snoU13.24-201ENST00000458998 104 ntBASIC3.45□□□□□ -1.86
USP28Q96RU2 AL672167.3-201ENST00000465951 960 ntBASIC3.45□□□□□ -1.86
USP28Q96RU2 AC004930.1-201ENST00000470677 254 ntTSL 2 BASIC3.45□□□□□ -1.86
USP28Q96RU2 AL136126.1-201ENST00000473603 402 ntBASIC3.45□□□□□ -1.86
USP28Q96RU2 AC073359.1-201ENST00000486545 521 ntTSL 2 BASIC3.45□□□□□ -1.86
USP28Q96RU2 KLHL6-AS1-201ENST00000491676 503 ntTSL 2 BASIC3.45□□□□□ -1.86
USP28Q96RU2 AC138057.1-201ENST00000497258 696 ntTSL 3 BASIC3.45□□□□□ -1.86
USP28Q96RU2 ENSA-210ENST00000503241 574 ntTSL 3 BASIC3.45□□□□□ -1.86
USP28Q96RU2 AC016933.1-201ENST00000504735 539 ntTSL 2 BASIC3.45□□□□□ -1.86
USP28Q96RU2 AC110751.1-201ENST00000511916 462 ntTSL 3 BASIC3.45□□□□□ -1.86
USP28Q96RU2 AC093879.2-201ENST00000513645 427 ntTSL 3 BASIC3.45□□□□□ -1.86
USP28Q96RU2 AC117532.1-201ENST00000514638 323 ntBASIC3.45□□□□□ -1.86
USP28Q96RU2 AC022390.1-201ENST00000517854 434 ntTSL 3 BASIC3.45□□□□□ -1.86
USP28Q96RU2 IGKV2D-36-201ENST00000518643 226 ntBASIC3.45□□□□□ -1.86
USP28Q96RU2 DUXAP2-201ENST00000519198 589 ntBASIC3.45□□□□□ -1.86
USP28Q96RU2 SMILR-201ENST00000533992 553 ntTSL 4 BASIC3.45□□□□□ -1.86
USP28Q96RU2 AC091053.2-201ENST00000534169 537 ntTSL 4 BASIC3.45□□□□□ -1.86
USP28Q96RU2 AC092470.1-201ENST00000546187 132 ntBASIC3.45□□□□□ -1.86
USP28Q96RU2 AL160237.1-201ENST00000554526 572 ntTSL 4 BASIC3.45□□□□□ -1.86
USP28Q96RU2 LINC02345-201ENST00000557883 766 ntTSL 3 BASIC3.45□□□□□ -1.86
USP28Q96RU2 AC084756.1-201ENST00000558237 606 ntTSL 5 BASIC3.45□□□□□ -1.86
USP28Q96RU2 AC026474.1-201ENST00000562422 428 ntTSL 2 BASIC3.45□□□□□ -1.86
USP28Q96RU2 AC025271.3-201ENST00000563031 255 ntTSL 5 BASIC3.45□□□□□ -1.86
USP28Q96RU2 AC012435.1-202ENST00000568772 240 ntBASIC3.45□□□□□ -1.86
USP28Q96RU2 AC118755.2-201ENST00000584676 212 ntTSL 3 BASIC3.45□□□□□ -1.86
USP28Q96RU2 AP001029.2-202ENST00000588197 739 ntTSL 3 BASIC3.45□□□□□ -1.86
USP28Q96RU2 LINC01928-201ENST00000591029 504 ntTSL 3 BASIC3.45□□□□□ -1.86
USP28Q96RU2 AL390240.1-201ENST00000612950 384 ntBASIC3.45□□□□□ -1.86
USP28Q96RU2 AC122133.1-201ENST00000613964 233 ntBASIC3.45□□□□□ -1.86
USP28Q96RU2 AC091931.1-201ENST00000623488 728 ntBASIC3.45□□□□□ -1.86
USP28Q96RU2 ABBA01000935.2-201ENST00000637477 838 ntBASIC3.45□□□□□ -1.86
USP28Q96RU2 RNF17-204ENST00000339524 2203 ntTSL 2 BASIC3.45□□□□□ -1.86
USP28Q96RU2 ASPN-201ENST00000375543 2237 ntTSL 2 BASIC3.45□□□□□ -1.86
USP28Q96RU2 AC002546.1-201ENST00000588041 2504 ntBASIC3.45□□□□□ -1.86
USP28Q96RU2 C5orf51-201ENST00000381647 5241 ntAPPRIS P1 TSL 1 (best) BASIC3.45□□□□□ -1.86
USP28Q96RU2 FPGT-TNNI3K-202ENST00000370895 7566 ntTSL 2 BASIC3.45□□□□□ -1.86
USP28Q96RU2 OFD1P5Y-201ENST00000447585 2590 ntBASIC3.45□□□□□ -1.86
USP28Q96RU2 CADM2-AS1-201ENST00000476021 2656 ntTSL 1 (best) BASIC3.45□□□□□ -1.86
USP28Q96RU2 TIGD2-201ENST00000317005 2083 ntAPPRIS P1 BASIC3.44□□□□□ -1.86
USP28Q96RU2 THUMPD3P1-201ENST00000506556 1480 ntBASIC3.44□□□□□ -1.86
USP28Q96RU2 RNU6-263P-201ENST00000363811 107 ntBASIC3.44□□□□□ -1.86
USP28Q96RU2 SNRPEP2-201ENST00000397592 279 ntBASIC3.44□□□□□ -1.86
USP28Q96RU2 CYCSP45-201ENST00000402289 315 ntBASIC3.44□□□□□ -1.86
USP28Q96RU2 AC096632.1-201ENST00000427395 310 ntBASIC3.44□□□□□ -1.86
USP28Q96RU2 AL390023.1-201ENST00000428836 262 ntBASIC3.44□□□□□ -1.86
USP28Q96RU2 MTND1P20-201ENST00000430341 950 ntBASIC3.44□□□□□ -1.86
USP28Q96RU2 AC022537.1-201ENST00000435271 446 ntTSL 3 BASIC3.44□□□□□ -1.86
USP28Q96RU2 AL357140.2-201ENST00000445884 440 ntTSL 3 BASIC3.44□□□□□ -1.86
USP28Q96RU2 HMGB1P15-201ENST00000453854 435 ntBASIC3.44□□□□□ -1.86
USP28Q96RU2 AC117465.1-201ENST00000457125 522 ntTSL 3 BASIC3.44□□□□□ -1.86
USP28Q96RU2 ARPC3P2-201ENST00000457786 533 ntBASIC3.44□□□□□ -1.86
USP28Q96RU2 AC092757.1-201ENST00000467293 467 ntBASIC3.44□□□□□ -1.86
USP28Q96RU2 AHI1-208ENST00000488690 712 ntTSL 5 BASIC3.44□□□□□ -1.86
USP28Q96RU2 RPL7P23-201ENST00000493874 747 ntBASIC3.44□□□□□ -1.86
USP28Q96RU2 AC104685.1-201ENST00000502445 371 ntBASIC3.44□□□□□ -1.86
USP28Q96RU2 AC005178.1-201ENST00000508392 440 ntBASIC3.44□□□□□ -1.86
USP28Q96RU2 AC005699.1-201ENST00000510095 555 ntTSL 3 BASIC3.44□□□□□ -1.86
USP28Q96RU2 AC104057.1-201ENST00000515547 497 ntBASIC3.44□□□□□ -1.86
USP28Q96RU2 RNU1-61P-201ENST00000516107 151 ntBASIC3.44□□□□□ -1.86
USP28Q96RU2 SNORA31.20-201ENST00000517111 133 ntBASIC3.44□□□□□ -1.86
USP28Q96RU2 ARL2BPP5-201ENST00000523141 481 ntBASIC3.44□□□□□ -1.86
USP28Q96RU2 LINC01493-203ENST00000534756 509 ntTSL 3 BASIC3.44□□□□□ -1.86
USP28Q96RU2 MRPL42-203ENST00000547098 701 ntTSL 3 BASIC3.44□□□□□ -1.86
USP28Q96RU2 AL358333.2-201ENST00000556834 529 ntTSL 5 BASIC3.44□□□□□ -1.86
USP28Q96RU2 AC090771.2-201ENST00000588794 571 ntTSL 3 BASIC3.44□□□□□ -1.86
USP28Q96RU2 AL669831.4-202ENST00000590817 238 ntBASIC3.44□□□□□ -1.86
USP28Q96RU2 AL031985.2-201ENST00000600955 480 ntBASIC3.44□□□□□ -1.86
USP28Q96RU2 AP000811.1-201ENST00000603803 651 ntBASIC3.44□□□□□ -1.86
USP28Q96RU2 AC112250.2-201ENST00000609450 491 ntTSL 3 BASIC3.44□□□□□ -1.86
USP28Q96RU2 OR8K3-202ENST00000623845 939 ntAPPRIS P1 BASIC3.44□□□□□ -1.86
USP28Q96RU2 AC092192.1-201ENST00000633154 1018 ntBASIC3.44□□□□□ -1.86
USP28Q96RU2 AC004925.1-201ENST00000624256 2706 ntBASIC3.44□□□□□ -1.86
USP28Q96RU2 ANKRD20A17P-201ENST00000511745 1330 ntBASIC3.44□□□□□ -1.86
USP28Q96RU2 AK9-201ENST00000285397 2566 ntTSL 1 (best) BASIC3.43□□□□□ -1.86
USP28Q96RU2 IL2-201ENST00000226730 1029 ntAPPRIS P1 TSL 1 (best) BASIC3.43□□□□□ -1.86
USP28Q96RU2 OR13C4-201ENST00000277216 957 ntAPPRIS P1 BASIC3.43□□□□□ -1.86
USP28Q96RU2 OR5T2-201ENST00000313264 1248 ntAPPRIS P2 BASIC3.43□□□□□ -1.86
USP28Q96RU2 CUBN-201ENST00000377823 705 ntTSL 3 BASIC3.43□□□□□ -1.86
USP28Q96RU2 MS4A4E-202ENST00000398986 522 ntAPPRIS P1 TSL 5 BASIC3.43□□□□□ -1.86
USP28Q96RU2 NT5C3A-205ENST00000409467 1032 ntAPPRIS ALT1 TSL 5 BASIC3.43□□□□□ -1.86
USP28Q96RU2 RNA5SP120-201ENST00000410900 112 ntBASIC3.43□□□□□ -1.86
USP28Q96RU2 USP9YP33-201ENST00000412220 421 ntBASIC3.43□□□□□ -1.86
Retrieved 100 of 98,524 protein–RNA pairs in 102.4 ms