Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 TIMM9P2-201ENST00000419324 266 ntBASIC3.03□□□□□ -1.92
VPS35Q96QK1 C1orf195-201ENST00000424792 255 ntTSL 2 BASIC3.03□□□□□ -1.92
VPS35Q96QK1 OR2AS1P-201ENST00000427827 319 ntBASIC3.03□□□□□ -1.92
VPS35Q96QK1 RPL21P40-201ENST00000428586 483 ntBASIC3.03□□□□□ -1.92
VPS35Q96QK1 ARPC3P5-201ENST00000448802 534 ntBASIC3.03□□□□□ -1.92
VPS35Q96QK1 AL359385.1-201ENST00000456509 365 ntBASIC3.03□□□□□ -1.92
VPS35Q96QK1 RNU7-136P-201ENST00000458819 69 ntBASIC3.03□□□□□ -1.92
VPS35Q96QK1 NCOR1P1-201ENST00000478176 406 ntTSL 1 (best) BASIC3.03□□□□□ -1.92
VPS35Q96QK1 RN7SL499P-201ENST00000481141 276 ntBASIC3.03□□□□□ -1.92
VPS35Q96QK1 LRRC70-203ENST00000491184 703 ntTSL 3 BASIC3.03□□□□□ -1.92
VPS35Q96QK1 LINC01846-201ENST00000505908 651 ntTSL 5 BASIC3.03□□□□□ -1.92
VPS35Q96QK1 AC011396.1-201ENST00000507391 312 ntTSL 3 BASIC3.03□□□□□ -1.92
VPS35Q96QK1 LEF1-218ENST00000512172 598 ntTSL 2 BASIC3.03□□□□□ -1.92
VPS35Q96QK1 AC010374.2-201ENST00000512933 535 ntBASIC3.03□□□□□ -1.92
VPS35Q96QK1 AC017037.2-201ENST00000513850 890 ntBASIC3.03□□□□□ -1.92
VPS35Q96QK1 SNORD59.2-201ENST00000516873 68 ntBASIC3.03□□□□□ -1.92
VPS35Q96QK1 AP002404.1-201ENST00000532005 451 ntBASIC3.03□□□□□ -1.92
VPS35Q96QK1 AC022509.2-201ENST00000540392 699 ntTSL 3 BASIC3.03□□□□□ -1.92
VPS35Q96QK1 AC020978.4-201ENST00000569088 460 ntTSL 3 BASIC3.03□□□□□ -1.92
VPS35Q96QK1 AC090615.1-201ENST00000577519 154 ntBASIC3.03□□□□□ -1.92
VPS35Q96QK1 MIR3908-201ENST00000579798 126 ntBASIC3.03□□□□□ -1.92
VPS35Q96QK1 AC010320.2-202ENST00000599125 595 ntTSL 4 BASIC3.03□□□□□ -1.92
VPS35Q96QK1 MIR4458HG-202ENST00000605918 1057 ntTSL 1 (best) BASIC3.03□□□□□ -1.92
VPS35Q96QK1 DUXAP10-204ENST00000612052 616 ntBASIC3.03□□□□□ -1.92
VPS35Q96QK1 KLRF1-207ENST00000617793 1096 ntTSL 1 (best) BASIC3.03□□□□□ -1.92
VPS35Q96QK1 GMFB-210ENST00000628554 639 ntTSL 4 BASIC3.03□□□□□ -1.92
VPS35Q96QK1 ZNF883-201ENST00000619044 2051 ntAPPRIS P1 TSL 5 BASIC3.03□□□□□ -1.92
VPS35Q96QK1 AC092435.3-201ENST00000565538 3654 ntBASIC3.03□□□□□ -1.92
VPS35Q96QK1 RICTOR-201ENST00000296782 7505 ntTSL 1 (best) BASIC3.03□□□□□ -1.92
VPS35Q96QK1 KIAA1107-202ENST00000636278 4065 ntAPPRIS P1 TSL 5 BASIC3.03□□□□□ -1.93
VPS35Q96QK1 MTND5P19-201ENST00000424872 1794 ntBASIC3.02□□□□□ -1.93
VPS35Q96QK1 AL079343.1-201ENST00000572358 1771 ntBASIC3.02□□□□□ -1.93
VPS35Q96QK1 SCFD1-207ENST00000544052 2058 ntTSL 2 BASIC3.02□□□□□ -1.93
VPS35Q96QK1 YWHAZ-219ENST00000522542 1394 ntTSL 2 BASIC3.02□□□□□ -1.93
VPS35Q96QK1 AF165147.1-201ENST00000433310 6103 ntTSL 2 BASIC3.02□□□□□ -1.93
VPS35Q96QK1 LPP-221ENST00000618621 18277 ntTSL 1 (best) BASIC3.02□□□□□ -1.93
VPS35Q96QK1 LPP-222ENST00000640853 18277 ntAPPRIS P1 TSL 1 (best) BASIC3.02□□□□□ -1.93
VPS35Q96QK1 MIR22-201ENST00000362190 85 ntBASIC3.02□□□□□ -1.93
VPS35Q96QK1 MIR422A-201ENST00000362286 90 ntBASIC3.02□□□□□ -1.93
VPS35Q96QK1 ERHP2-201ENST00000402323 299 ntBASIC3.02□□□□□ -1.93
VPS35Q96QK1 AL354719.1-201ENST00000406535 843 ntBASIC3.02□□□□□ -1.93
VPS35Q96QK1 RNU4-22P-201ENST00000411058 166 ntBASIC3.02□□□□□ -1.93
VPS35Q96QK1 AC019064.1-201ENST00000414796 499 ntTSL 2 BASIC3.02□□□□□ -1.93
VPS35Q96QK1 MRPL50P2-201ENST00000416821 482 ntBASIC3.02□□□□□ -1.93
VPS35Q96QK1 GRK5-IT1-201ENST00000421206 400 ntTSL 3 BASIC3.02□□□□□ -1.93
VPS35Q96QK1 RBM6-203ENST00000421682 684 ntTSL 2 BASIC3.02□□□□□ -1.93
VPS35Q96QK1 AL451127.1-201ENST00000422909 624 ntTSL 3 BASIC3.02□□□□□ -1.93
VPS35Q96QK1 AL139421.1-201ENST00000423010 169 ntBASIC3.02□□□□□ -1.93
VPS35Q96QK1 AL390023.1-201ENST00000428836 262 ntBASIC3.02□□□□□ -1.93
VPS35Q96QK1 THAP5P1-201ENST00000439089 262 ntBASIC3.02□□□□□ -1.93
VPS35Q96QK1 OR10R1P-201ENST00000441524 1141 ntBASIC3.02□□□□□ -1.93
VPS35Q96QK1 AL031313.1-201ENST00000448435 256 ntBASIC3.02□□□□□ -1.93
VPS35Q96QK1 EXOSC3P1-201ENST00000448649 500 ntBASIC3.02□□□□□ -1.93
VPS35Q96QK1 AL583803.1-201ENST00000454262 334 ntTSL 3 BASIC3.02□□□□□ -1.93
VPS35Q96QK1 AL590639.1-201ENST00000456484 337 ntBASIC3.02□□□□□ -1.93
VPS35Q96QK1 AC097493.1-201ENST00000463958 372 ntBASIC3.02□□□□□ -1.93
VPS35Q96QK1 NDUFA6-201ENST00000470753 475 ntTSL 2 BASIC3.02□□□□□ -1.93
VPS35Q96QK1 AC068724.1-201ENST00000487100 792 ntBASIC3.02□□□□□ -1.93
VPS35Q96QK1 PTPRG-AS1-210ENST00000498655 547 ntTSL 4 BASIC3.02□□□□□ -1.93
VPS35Q96QK1 VN1R104P-201ENST00000505115 1009 ntBASIC3.02□□□□□ -1.93
VPS35Q96QK1 LINC01957-201ENST00000506392 751 ntTSL 1 (best) BASIC3.02□□□□□ -1.93
VPS35Q96QK1 CSN1S1-204ENST00000507772 895 ntAPPRIS ALT2 TSL 5 BASIC3.02□□□□□ -1.93
VPS35Q96QK1 LINC02229-201ENST00000508486 661 ntTSL 3 BASIC3.02□□□□□ -1.93
VPS35Q96QK1 AC103726.1-201ENST00000520785 474 ntTSL 2 BASIC3.02□□□□□ -1.93
VPS35Q96QK1 IL18-204ENST00000528832 795 ntAPPRIS P3 TSL 3 BASIC3.02□□□□□ -1.93
VPS35Q96QK1 GLIPR1L1-204ENST00000548623 484 ntTSL 3 BASIC3.02□□□□□ -1.93
VPS35Q96QK1 AC092718.6-202ENST00000563072 408 ntTSL 2 BASIC3.02□□□□□ -1.93
VPS35Q96QK1 AL512347.1-201ENST00000566420 503 ntBASIC3.02□□□□□ -1.93
VPS35Q96QK1 AC018371.1-201ENST00000584560 640 ntTSL 3 BASIC3.02□□□□□ -1.93
VPS35Q96QK1 MTND3P19-201ENST00000603825 345 ntBASIC3.02□□□□□ -1.93
VPS35Q96QK1 AL160237.3-201ENST00000604114 1013 ntBASIC3.02□□□□□ -1.93
VPS35Q96QK1 MIR6076-201ENST00000617521 113 ntBASIC3.02□□□□□ -1.93
VPS35Q96QK1 AC231657.1-201ENST00000624313 397 ntBASIC3.02□□□□□ -1.93
VPS35Q96QK1 AC068631.1-219ENST00000625826 668 ntTSL 5 BASIC3.02□□□□□ -1.93
VPS35Q96QK1 AC090897.3-201ENST00000636973 1157 ntBASIC3.02□□□□□ -1.93
VPS35Q96QK1 C6orf10-202ENST00000375015 2173 ntAPPRIS ALT2 TSL 5 BASIC3.02□□□□□ -1.93
VPS35Q96QK1 ZNF479-202ENST00000331162 2072 ntAPPRIS P1 TSL 1 (best) BASIC3.02□□□□□ -1.93
VPS35Q96QK1 AC011124.1-201ENST00000521221 1762 ntTSL 2 BASIC3.02□□□□□ -1.93
VPS35Q96QK1 AC093831.2-201ENST00000624393 3427 ntBASIC3.02□□□□□ -1.93
VPS35Q96QK1 AL022578.1-201ENST00000439330 1433 ntBASIC3.02□□□□□ -1.93
VPS35Q96QK1 SPEF2-203ENST00000440995 5964 ntAPPRIS ALT2 TSL 5 BASIC3.01□□□□□ -1.93
VPS35Q96QK1 TUSC7-203ENST00000477539 2415 ntTSL 1 (best) BASIC3.01□□□□□ -1.93
VPS35Q96QK1 STATH-201ENST00000246895 598 ntAPPRIS P1 TSL 1 (best) BASIC3.01□□□□□ -1.93
VPS35Q96QK1 U3.6-201ENST00000363622 211 ntBASIC3.01□□□□□ -1.93
VPS35Q96QK1 SNORA71.1-201ENST00000364523 117 ntBASIC3.01□□□□□ -1.93
VPS35Q96QK1 RPS3AP26-201ENST00000398259 784 ntBASIC3.01□□□□□ -1.93
VPS35Q96QK1 AL078645.1-201ENST00000414377 423 ntTSL 3 BASIC3.01□□□□□ -1.93
VPS35Q96QK1 AL356320.2-201ENST00000417263 507 ntBASIC3.01□□□□□ -1.93
VPS35Q96QK1 RPL27AP8-201ENST00000424277 446 ntBASIC3.01□□□□□ -1.93
VPS35Q96QK1 LINC01953-201ENST00000426870 717 ntTSL 5 BASIC3.01□□□□□ -1.93
VPS35Q96QK1 RPL23AP83-201ENST00000434984 473 ntBASIC3.01□□□□□ -1.93
VPS35Q96QK1 LINC01359-202ENST00000436350 710 ntTSL 3 BASIC3.01□□□□□ -1.93
VPS35Q96QK1 LINC01378-202ENST00000437514 783 ntTSL 3 BASIC3.01□□□□□ -1.93
VPS35Q96QK1 AC095032.1-201ENST00000444810 527 ntTSL 3 BASIC3.01□□□□□ -1.93
VPS35Q96QK1 AL671855.1-201ENST00000446875 1203 ntBASIC3.01□□□□□ -1.93
VPS35Q96QK1 MAST4-AS1-201ENST00000451496 777 ntTSL 2 BASIC3.01□□□□□ -1.93
VPS35Q96QK1 MTND1P16-201ENST00000465177 898 ntBASIC3.01□□□□□ -1.93
VPS35Q96QK1 RPL30P14-201ENST00000482744 348 ntBASIC3.01□□□□□ -1.93
VPS35Q96QK1 RN7SL20P-201ENST00000488827 297 ntBASIC3.01□□□□□ -1.93
VPS35Q96QK1 PGRMC2-204ENST00000503872 1028 ntTSL 3 BASIC3.01□□□□□ -1.93
Retrieved 100 of 98,524 protein–RNA pairs in 93.2 ms