Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 MRPL51-203ENST00000538814 501 ntTSL 2 BASIC4.52□□□□□ -1.69
CLIP3Q96DZ5 AC055720.1-201ENST00000539552 475 ntTSL 5 BASIC4.52□□□□□ -1.69
CLIP3Q96DZ5 AP000786.1-201ENST00000541092 581 ntTSL 4 BASIC4.52□□□□□ -1.69
CLIP3Q96DZ5 MRPL51-207ENST00000543959 472 ntTSL 3 BASIC4.52□□□□□ -1.69
CLIP3Q96DZ5 LINC01405-202ENST00000547607 674 ntTSL 3 BASIC4.52□□□□□ -1.69
CLIP3Q96DZ5 AL133166.1-202ENST00000550975 565 ntTSL 4 BASIC4.52□□□□□ -1.69
CLIP3Q96DZ5 AC011773.2-201ENST00000551479 285 ntTSL 5 BASIC4.52□□□□□ -1.69
CLIP3Q96DZ5 AL110118.1-201ENST00000553543 400 ntBASIC4.52□□□□□ -1.69
CLIP3Q96DZ5 OR4T1P-201ENST00000554933 911 ntBASIC4.52□□□□□ -1.69
CLIP3Q96DZ5 AL139317.3-202ENST00000555689 528 ntTSL 5 BASIC4.52□□□□□ -1.69
CLIP3Q96DZ5 RN7SL652P-201ENST00000577769 300 ntBASIC4.52□□□□□ -1.69
CLIP3Q96DZ5 AC006270.2-201ENST00000578523 652 ntBASIC4.52□□□□□ -1.69
CLIP3Q96DZ5 AC068790.4-201ENST00000602474 263 ntBASIC4.52□□□□□ -1.69
CLIP3Q96DZ5 AC106900.2-201ENST00000604994 317 ntBASIC4.52□□□□□ -1.69
CLIP3Q96DZ5 AC008121.3-201ENST00000618726 433 ntBASIC4.52□□□□□ -1.69
CLIP3Q96DZ5 LDHA-225ENST00000625635 141 ntTSL 5 BASIC4.52□□□□□ -1.69
CLIP3Q96DZ5 MIR1302-1-201ENST00000637932 143 ntBASIC4.52□□□□□ -1.69
CLIP3Q96DZ5 CTSS-201ENST00000368985 4107 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
CLIP3Q96DZ5 CASP1-210ENST00000528974 1402 ntTSL 2 BASIC4.52□□□□□ -1.69
CLIP3Q96DZ5 GABRA1-220ENST00000638159 4088 ntTSL 5 BASIC4.52□□□□□ -1.69
CLIP3Q96DZ5 ATP8A2P2-201ENST00000437678 1568 ntBASIC4.52□□□□□ -1.69
CLIP3Q96DZ5 RDH10-AS1-201ENST00000514599 3261 ntTSL 2 BASIC4.52□□□□□ -1.69
CLIP3Q96DZ5 ARHGAP42-203ENST00000524892 5685 ntTSL 5 BASIC4.52□□□□□ -1.69
CLIP3Q96DZ5 NCOA1-201ENST00000288599 6952 ntAPPRIS ALT2 TSL 1 (best) BASIC4.52□□□□□ -1.69
CLIP3Q96DZ5 CHD9-221ENST00000615216 10603 ntTSL 5 BASIC4.51□□□□□ -1.69
CLIP3Q96DZ5 SNORA71.2-201ENST00000364941 134 ntBASIC4.51□□□□□ -1.69
CLIP3Q96DZ5 RNA5SP167-201ENST00000365461 116 ntBASIC4.51□□□□□ -1.69
CLIP3Q96DZ5 LY6G5C-210ENST00000383237 674 ntAPPRIS P2 TSL 1 (best) BASIC4.51□□□□□ -1.69
CLIP3Q96DZ5 Y_RNA.431-201ENST00000384086 102 ntBASIC4.51□□□□□ -1.69
CLIP3Q96DZ5 MIR606-201ENST00000384851 96 ntBASIC4.51□□□□□ -1.69
CLIP3Q96DZ5 SNORA75.4-201ENST00000391278 119 ntBASIC4.51□□□□□ -1.69
CLIP3Q96DZ5 AC068050.1-201ENST00000394891 380 ntBASIC4.51□□□□□ -1.69
CLIP3Q96DZ5 RPS4XP8-201ENST00000402039 771 ntBASIC4.51□□□□□ -1.69
CLIP3Q96DZ5 RN7SKP267-201ENST00000410381 285 ntBASIC4.51□□□□□ -1.69
CLIP3Q96DZ5 SSXP9-201ENST00000417503 292 ntBASIC4.51□□□□□ -1.69
CLIP3Q96DZ5 AL353678.1-201ENST00000422735 741 ntBASIC4.51□□□□□ -1.69
CLIP3Q96DZ5 AL033539.1-201ENST00000427775 743 ntTSL 3 BASIC4.51□□□□□ -1.69
CLIP3Q96DZ5 AC024082.2-201ENST00000434771 238 ntBASIC4.51□□□□□ -1.69
CLIP3Q96DZ5 SEPT14P3-201ENST00000439401 183 ntBASIC4.51□□□□□ -1.69
CLIP3Q96DZ5 AL732372.2-207ENST00000445840 183 ntBASIC4.51□□□□□ -1.69
CLIP3Q96DZ5 AC025918.1-201ENST00000452467 383 ntTSL 3 BASIC4.51□□□□□ -1.69
CLIP3Q96DZ5 SEPT14P2-201ENST00000453405 183 ntBASIC4.51□□□□□ -1.69
CLIP3Q96DZ5 PTPN20-213ENST00000502705 854 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
CLIP3Q96DZ5 AC099520.1-202ENST00000503650 777 ntTSL 3 BASIC4.51□□□□□ -1.69
CLIP3Q96DZ5 AC023141.12-201ENST00000512399 199 ntBASIC4.51□□□□□ -1.69
CLIP3Q96DZ5 SEPT14P4-201ENST00000513445 186 ntBASIC4.51□□□□□ -1.69
CLIP3Q96DZ5 RN7SKP13-201ENST00000515933 244 ntBASIC4.51□□□□□ -1.69
CLIP3Q96DZ5 FO082796.1-201ENST00000523795 183 ntBASIC4.51□□□□□ -1.69
CLIP3Q96DZ5 PHBP17-201ENST00000528576 541 ntBASIC4.51□□□□□ -1.69
CLIP3Q96DZ5 AC109635.4-202ENST00000531666 412 ntBASIC4.51□□□□□ -1.69
CLIP3Q96DZ5 AC025575.1-201ENST00000548497 544 ntTSL 4 BASIC4.51□□□□□ -1.69
CLIP3Q96DZ5 FKBP1BP1-201ENST00000553366 325 ntBASIC4.51□□□□□ -1.69
CLIP3Q96DZ5 AL109766.1-201ENST00000555080 552 ntBASIC4.51□□□□□ -1.69
CLIP3Q96DZ5 AC034105.3-201ENST00000565294 442 ntBASIC4.51□□□□□ -1.69
CLIP3Q96DZ5 AC093515.1-201ENST00000567103 445 ntTSL 5 BASIC4.51□□□□□ -1.69
CLIP3Q96DZ5 MIR3146-201ENST00000580367 79 ntBASIC4.51□□□□□ -1.69
CLIP3Q96DZ5 AP001011.1-202ENST00000581172 667 ntTSL 3 BASIC4.51□□□□□ -1.69
CLIP3Q96DZ5 RN7SL690P-201ENST00000582087 240 ntBASIC4.51□□□□□ -1.69
CLIP3Q96DZ5 AL157938.2-203ENST00000589540 931 ntTSL 5 BASIC4.51□□□□□ -1.69
CLIP3Q96DZ5 MIR378J-201ENST00000611988 109 ntBASIC4.51□□□□□ -1.69
CLIP3Q96DZ5 AC040896.1-201ENST00000613819 479 ntBASIC4.51□□□□□ -1.69
CLIP3Q96DZ5 AC004825.2-201ENST00000616634 455 ntBASIC4.51□□□□□ -1.69
CLIP3Q96DZ5 AC092683.2-201ENST00000619740 621 ntTSL 3 BASIC4.51□□□□□ -1.69
CLIP3Q96DZ5 AC024940.5-201ENST00000622889 474 ntBASIC4.51□□□□□ -1.69
CLIP3Q96DZ5 USP8-202ENST00000396444 19026 ntAPPRIS P1 TSL 1 (best) BASIC4.51□□□□□ -1.69
CLIP3Q96DZ5 CKAP2P1-201ENST00000555477 2049 ntBASIC4.51□□□□□ -1.69
CLIP3Q96DZ5 WDFY3-201ENST00000295888 14247 ntAPPRIS P1 TSL 1 (best) BASIC4.51□□□□□ -1.69
CLIP3Q96DZ5 TFPI-203ENST00000392365 3649 ntAPPRIS P1 TSL 5 BASIC4.51□□□□□ -1.69
CLIP3Q96DZ5 PIGN-242ENST00000640145 4505 ntAPPRIS P1 TSL 5 BASIC4.51□□□□□ -1.69
CLIP3Q96DZ5 STARD4-201ENST00000296632 4606 ntAPPRIS P1 TSL 2 BASIC4.5□□□□□ -1.69
CLIP3Q96DZ5 MGAT4A-204ENST00000414521 3709 ntTSL 2 BASIC4.5□□□□□ -1.69
CLIP3Q96DZ5 CARF-203ENST00000414439 2099 ntTSL 2 BASIC4.5□□□□□ -1.69
CLIP3Q96DZ5 ACADM-203ENST00000420607 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC4.5□□□□□ -1.69
CLIP3Q96DZ5 PARP15-206ENST00000493645 1311 ntTSL 1 (best) BASIC4.5□□□□□ -1.69
CLIP3Q96DZ5 WEE2-201ENST00000397541 3061 ntAPPRIS P1 TSL 1 (best) BASIC4.5□□□□□ -1.69
CLIP3Q96DZ5 MACF1-203ENST00000361689 17538 ntTSL 5 BASIC4.5□□□□□ -1.69
CLIP3Q96DZ5 SAMD12-202ENST00000409003 8866 ntAPPRIS P1 TSL 5 BASIC4.5□□□□□ -1.69
CLIP3Q96DZ5 LINC00622-201ENST00000562811 1570 ntBASIC4.5□□□□□ -1.69
CLIP3Q96DZ5 OR13G1-201ENST00000359688 1046 ntAPPRIS P1 BASIC4.5□□□□□ -1.69
CLIP3Q96DZ5 RNA5-8SP7-201ENST00000363443 155 ntBASIC4.5□□□□□ -1.69
CLIP3Q96DZ5 RNU5A-8P-201ENST00000364102 114 ntBASIC4.5□□□□□ -1.69
CLIP3Q96DZ5 AL390198.1-201ENST00000376445 320 ntTSL 2 BASIC4.5□□□□□ -1.69
CLIP3Q96DZ5 RNU6-432P-201ENST00000384196 109 ntBASIC4.5□□□□□ -1.69
CLIP3Q96DZ5 RNU6-882P-201ENST00000391025 103 ntBASIC4.5□□□□□ -1.69
CLIP3Q96DZ5 RNU6-754P-201ENST00000391166 107 ntBASIC4.5□□□□□ -1.69
CLIP3Q96DZ5 AC007738.1-201ENST00000413892 348 ntBASIC4.5□□□□□ -1.69
CLIP3Q96DZ5 MTCO3P46-201ENST00000425787 232 ntBASIC4.5□□□□□ -1.69
CLIP3Q96DZ5 AL365400.1-201ENST00000431854 640 ntBASIC4.5□□□□□ -1.69
CLIP3Q96DZ5 RPL36AP53-201ENST00000432891 316 ntBASIC4.5□□□□□ -1.69
CLIP3Q96DZ5 LINC00280-201ENST00000439525 448 ntTSL 2 BASIC4.5□□□□□ -1.69
CLIP3Q96DZ5 CBX1P1-201ENST00000440184 427 ntBASIC4.5□□□□□ -1.69
CLIP3Q96DZ5 AL157882.1-201ENST00000447148 429 ntTSL 3 BASIC4.5□□□□□ -1.69
CLIP3Q96DZ5 KIAA0895-209ENST00000453212 956 ntTSL 3 BASIC4.5□□□□□ -1.69
CLIP3Q96DZ5 AC005008.1-201ENST00000456151 612 ntBASIC4.5□□□□□ -1.69
CLIP3Q96DZ5 RNU7-59P-201ENST00000459101 61 ntBASIC4.5□□□□□ -1.69
CLIP3Q96DZ5 RPS27AP17-201ENST00000463344 455 ntBASIC4.5□□□□□ -1.69
CLIP3Q96DZ5 RPS3AP50-201ENST00000487064 803 ntBASIC4.5□□□□□ -1.69
CLIP3Q96DZ5 AC023194.1-201ENST00000493084 308 ntBASIC4.5□□□□□ -1.69
CLIP3Q96DZ5 AC073073.1-201ENST00000493920 463 ntBASIC4.5□□□□□ -1.69
CLIP3Q96DZ5 ARHGEF3-AS1-202ENST00000495939 336 ntTSL 3 BASIC4.5□□□□□ -1.69
Retrieved 100 of 98,524 protein–RNA pairs in 100.3 ms