Protein–RNA interactions for Protein: Q8NEL0

CCDC54, Coiled-coil domain-containing protein 54, humanhuman

Predictions only

Length 328 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC54Q8NEL0 AC116618.1-201ENST00000634617 774 ntBASIC2.61□□□□□ -1.99
CCDC54Q8NEL0 MTRNR2L10-201ENST00000545075 1530 ntAPPRIS P1 BASIC2.61□□□□□ -1.99
CCDC54Q8NEL0 AC106754.1-201ENST00000562632 1513 ntBASIC2.61□□□□□ -1.99
CCDC54Q8NEL0 MCMDC2-201ENST00000313616 2043 ntTSL 2 BASIC2.61□□□□□ -1.99
CCDC54Q8NEL0 GMFB-208ENST00000554908 6721 ntTSL 1 (best) BASIC2.6□□□□□ -1.99
CCDC54Q8NEL0 AL022578.1-201ENST00000439330 1433 ntBASIC2.6□□□□□ -1.99
CCDC54Q8NEL0 GABRG2-229ENST00000641017 3628 ntBASIC2.6□□□□□ -1.99
CCDC54Q8NEL0 AC006378.2-201ENST00000623178 2476 ntBASIC2.6□□□□□ -1.99
CCDC54Q8NEL0 ISPD-AS1-202ENST00000438573 2252 ntTSL 1 (best) BASIC2.6□□□□□ -1.99
CCDC54Q8NEL0 MTCO1P12-201ENST00000414273 1543 ntBASIC2.6□□□□□ -1.99
CCDC54Q8NEL0 OR5I1-201ENST00000301532 945 ntAPPRIS P1 BASIC2.6□□□□□ -1.99
CCDC54Q8NEL0 AC073325.2-201ENST00000339545 159 ntBASIC2.6□□□□□ -1.99
CCDC54Q8NEL0 PKIB-202ENST00000354275 1043 ntAPPRIS P1 TSL 1 (best) BASIC2.6□□□□□ -1.99
CCDC54Q8NEL0 NACA3P-201ENST00000359690 648 ntBASIC2.6□□□□□ -1.99
CCDC54Q8NEL0 MIR22-201ENST00000362190 85 ntBASIC2.6□□□□□ -1.99
CCDC54Q8NEL0 SNORA63.1-201ENST00000362493 131 ntBASIC2.6□□□□□ -1.99
CCDC54Q8NEL0 RNU4-68P-201ENST00000364314 141 ntBASIC2.6□□□□□ -1.99
CCDC54Q8NEL0 RNU6-878P-201ENST00000384578 110 ntBASIC2.6□□□□□ -1.99
CCDC54Q8NEL0 RNU6-906P-201ENST00000384700 70 ntBASIC2.6□□□□□ -1.99
CCDC54Q8NEL0 HMGB1P17-201ENST00000403495 628 ntBASIC2.6□□□□□ -1.99
CCDC54Q8NEL0 SNORD88.1-201ENST00000408684 91 ntBASIC2.6□□□□□ -1.99
CCDC54Q8NEL0 ELOCP9-201ENST00000418624 239 ntBASIC2.6□□□□□ -1.99
CCDC54Q8NEL0 ATP5F1P1-201ENST00000433775 569 ntBASIC2.6□□□□□ -1.99
CCDC54Q8NEL0 FGF7P5-201ENST00000441829 291 ntBASIC2.6□□□□□ -1.99
CCDC54Q8NEL0 LAMTOR5P1-201ENST00000444290 270 ntBASIC2.6□□□□□ -1.99
CCDC54Q8NEL0 OFD1P3Y-201ENST00000453312 783 ntBASIC2.6□□□□□ -1.99
CCDC54Q8NEL0 RPL21P134-201ENST00000453468 483 ntBASIC2.6□□□□□ -1.99
CCDC54Q8NEL0 SUMO2P2-201ENST00000456482 255 ntBASIC2.6□□□□□ -1.99
CCDC54Q8NEL0 AC108751.4-201ENST00000462931 1001 ntTSL 2 BASIC2.6□□□□□ -1.99
CCDC54Q8NEL0 RPL31P50-201ENST00000471002 296 ntBASIC2.6□□□□□ -1.99
CCDC54Q8NEL0 RN7SL601P-201ENST00000471221 293 ntBASIC2.6□□□□□ -1.99
CCDC54Q8NEL0 AC091212.1-201ENST00000474798 395 ntTSL 5 BASIC2.6□□□□□ -1.99
CCDC54Q8NEL0 RPS29P2-201ENST00000479278 136 ntBASIC2.6□□□□□ -1.99
CCDC54Q8NEL0 AC132825.2-201ENST00000483901 504 ntTSL 5 BASIC2.6□□□□□ -1.99
CCDC54Q8NEL0 AC008629.1-202ENST00000504820 525 ntTSL 4 BASIC2.6□□□□□ -1.99
CCDC54Q8NEL0 COX7A2P2-201ENST00000505291 250 ntBASIC2.6□□□□□ -1.99
CCDC54Q8NEL0 LINC02379-201ENST00000505741 300 ntTSL 3 BASIC2.6□□□□□ -1.99
CCDC54Q8NEL0 AC026719.1-201ENST00000506059 456 ntTSL 3 BASIC2.6□□□□□ -1.99
CCDC54Q8NEL0 AC104090.1-201ENST00000506341 1171 ntBASIC2.6□□□□□ -1.99
CCDC54Q8NEL0 XKRY-201ENST00000510392 1100 ntBASIC2.6□□□□□ -1.99
CCDC54Q8NEL0 AC079395.1-201ENST00000510981 262 ntBASIC2.6□□□□□ -1.99
CCDC54Q8NEL0 SAP18P1-201ENST00000512058 390 ntBASIC2.6□□□□□ -1.99
CCDC54Q8NEL0 AC093879.2-201ENST00000513645 427 ntTSL 3 BASIC2.6□□□□□ -1.99
CCDC54Q8NEL0 AC017037.2-201ENST00000513850 890 ntBASIC2.6□□□□□ -1.99
CCDC54Q8NEL0 RN7SKP272-201ENST00000516988 232 ntBASIC2.6□□□□□ -1.99
CCDC54Q8NEL0 SCARNA1-201ENST00000517138 166 ntBASIC2.6□□□□□ -1.99
CCDC54Q8NEL0 UQCRB-202ENST00000517523 515 ntTSL 2 BASIC2.6□□□□□ -1.99
CCDC54Q8NEL0 AC027701.1-201ENST00000520155 823 ntTSL 3 BASIC2.6□□□□□ -1.99
CCDC54Q8NEL0 AC103726.1-201ENST00000520785 474 ntTSL 2 BASIC2.6□□□□□ -1.99
CCDC54Q8NEL0 OOSP2-203ENST00000532905 496 ntAPPRIS ALT2 TSL 3 BASIC2.6□□□□□ -1.99
CCDC54Q8NEL0 AC092747.1-201ENST00000538920 351 ntTSL 5 BASIC2.6□□□□□ -1.99
CCDC54Q8NEL0 AL132857.1-201ENST00000555180 708 ntBASIC2.6□□□□□ -1.99
CCDC54Q8NEL0 CYCSP2-201ENST00000558168 301 ntBASIC2.6□□□□□ -1.99
CCDC54Q8NEL0 C15orf65-201ENST00000569691 729 ntAPPRIS P1 TSL 1 (best) BASIC2.6□□□□□ -1.99
CCDC54Q8NEL0 MTND1P8-201ENST00000571424 950 ntBASIC2.6□□□□□ -1.99
CCDC54Q8NEL0 MIR5680-201ENST00000577577 84 ntBASIC2.6□□□□□ -1.99
CCDC54Q8NEL0 LIVAR-201ENST00000578633 384 ntTSL 3 BASIC2.6□□□□□ -1.99
CCDC54Q8NEL0 AC138761.3-201ENST00000579993 334 ntBASIC2.6□□□□□ -1.99
CCDC54Q8NEL0 AC008739.3-201ENST00000603262 127 ntBASIC2.6□□□□□ -1.99
CCDC54Q8NEL0 RPP40P2-201ENST00000603596 712 ntBASIC2.6□□□□□ -1.99
CCDC54Q8NEL0 MIR663AHG-231ENST00000609044 590 ntTSL 5 BASIC2.6□□□□□ -1.99
CCDC54Q8NEL0 AC009570.1-201ENST00000609599 745 ntBASIC2.6□□□□□ -1.99
CCDC54Q8NEL0 AC092106.3-201ENST00000611308 722 ntBASIC2.6□□□□□ -1.99
CCDC54Q8NEL0 AC016597.2-201ENST00000613256 341 ntBASIC2.6□□□□□ -1.99
CCDC54Q8NEL0 OR8H2-202ENST00000618136 1038 ntAPPRIS ALT1 BASIC2.6□□□□□ -1.99
CCDC54Q8NEL0 AL356585.4-201ENST00000623078 1229 ntBASIC2.6□□□□□ -1.99
CCDC54Q8NEL0 GMFB-210ENST00000628554 639 ntTSL 4 BASIC2.6□□□□□ -1.99
CCDC54Q8NEL0 TTN-AS1-267ENST00000628826 662 ntTSL 5 BASIC2.6□□□□□ -1.99
CCDC54Q8NEL0 PROX1-AS1-244ENST00000630355 599 ntTSL 5 BASIC2.6□□□□□ -1.99
CCDC54Q8NEL0 PKIB-201ENST00000258014 1595 ntTSL 2 BASIC2.6□□□□□ -1.99
CCDC54Q8NEL0 BAZ2B-202ENST00000343439 2364 ntTSL 5 BASIC2.6□□□□□ -1.99
CCDC54Q8NEL0 AL355596.1-201ENST00000565399 3996 ntBASIC2.6□□□□□ -1.99
CCDC54Q8NEL0 AC096644.4-201ENST00000563417 2912 ntBASIC2.6□□□□□ -1.99
CCDC54Q8NEL0 CPD-202ENST00000543464 4007 ntTSL 2 BASIC2.59□□□□□ -1.99
CCDC54Q8NEL0 UHMK1-204ENST00000545294 8117 ntTSL 2 BASIC2.59□□□□□ -1.99
CCDC54Q8NEL0 SGO1P2-201ENST00000429458 1589 ntBASIC2.59□□□□□ -1.99
CCDC54Q8NEL0 HSFY1-202ENST00000309834 1038 ntAPPRIS ALT2 TSL 1 (best) BASIC2.59□□□□□ -1.99
CCDC54Q8NEL0 HSFY2-202ENST00000344884 1038 ntAPPRIS ALT2 TSL 1 (best) BASIC2.59□□□□□ -1.99
CCDC54Q8NEL0 CASP1-201ENST00000353247 423 ntTSL 1 (best) BASIC2.59□□□□□ -1.99
CCDC54Q8NEL0 TMCO2-201ENST00000372766 739 ntAPPRIS P1 TSL 1 (best) BASIC2.59□□□□□ -1.99
CCDC54Q8NEL0 CXorf65-201ENST00000374251 601 ntAPPRIS P1 TSL 5 BASIC2.59□□□□□ -1.99
CCDC54Q8NEL0 RNU6-851P-201ENST00000384565 107 ntBASIC2.59□□□□□ -1.99
CCDC54Q8NEL0 AL451074.5-201ENST00000415894 435 ntBASIC2.59□□□□□ -1.99
CCDC54Q8NEL0 DIAPH3-AS1-201ENST00000422052 428 ntTSL 3 BASIC2.59□□□□□ -1.99
CCDC54Q8NEL0 COX7BP2-201ENST00000437976 242 ntBASIC2.59□□□□□ -1.99
CCDC54Q8NEL0 GSAP-208ENST00000441833 737 ntTSL 1 (best) BASIC2.59□□□□□ -1.99
CCDC54Q8NEL0 LINC01004-201ENST00000445184 686 ntTSL 5 BASIC2.59□□□□□ -1.99
CCDC54Q8NEL0 EEF1E1P1-201ENST00000446998 430 ntBASIC2.59□□□□□ -1.99
CCDC54Q8NEL0 AC007327.1-201ENST00000447461 264 ntBASIC2.59□□□□□ -1.99
CCDC54Q8NEL0 AL513422.1-201ENST00000449531 383 ntTSL 2 BASIC2.59□□□□□ -1.99
CCDC54Q8NEL0 BX322784.1-201ENST00000455793 1077 ntBASIC2.59□□□□□ -1.99
CCDC54Q8NEL0 RPS4XP10-201ENST00000465034 731 ntBASIC2.59□□□□□ -1.99
CCDC54Q8NEL0 AC091153.1-201ENST00000466297 402 ntBASIC2.59□□□□□ -1.99
CCDC54Q8NEL0 RN7SL807P-201ENST00000470923 297 ntBASIC2.59□□□□□ -1.99
CCDC54Q8NEL0 HMGB1P36-201ENST00000487709 576 ntBASIC2.59□□□□□ -1.99
CCDC54Q8NEL0 NAA50-206ENST00000493454 964 ntTSL 2 BASIC2.59□□□□□ -1.99
CCDC54Q8NEL0 GTF2IP9-201ENST00000502460 301 ntBASIC2.59□□□□□ -1.99
CCDC54Q8NEL0 DSTNP2-201ENST00000504533 515 ntBASIC2.59□□□□□ -1.99
CCDC54Q8NEL0 LINC01846-201ENST00000505908 651 ntTSL 5 BASIC2.59□□□□□ -1.99
CCDC54Q8NEL0 AC009901.1-201ENST00000506703 541 ntBASIC2.59□□□□□ -1.99
Retrieved 100 of 98,524 protein–RNA pairs in 112.3 ms