Protein–RNA interactions for Protein: Q8N3C7

CLIP4, CAP-Gly domain-containing linker protein 4, humanhuman

Predictions only

Length 705 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP4Q8N3C7 AC009159.1-201ENST00000618386 642 ntBASIC3.61□□□□□ -1.83
CLIP4Q8N3C7 CCL14-203ENST00000620991 426 ntTSL 1 (best) BASIC3.61□□□□□ -1.83
CLIP4Q8N3C7 AC109471.3-201ENST00000625219 233 ntTSL 5 BASIC3.61□□□□□ -1.83
CLIP4Q8N3C7 LRRN3-203ENST00000422987 3513 ntAPPRIS P1 TSL 1 (best) BASIC3.61□□□□□ -1.83
CLIP4Q8N3C7 AC018462.1-201ENST00000425966 1684 ntTSL 1 (best) BASIC3.61□□□□□ -1.83
CLIP4Q8N3C7 AC092447.10-201ENST00000620607 1652 ntBASIC3.61□□□□□ -1.83
CLIP4Q8N3C7 LYST-201ENST00000389793 13480 ntAPPRIS P1 TSL 5 BASIC3.61□□□□□ -1.83
CLIP4Q8N3C7 RAD17-208ENST00000380774 2117 ntAPPRIS P1 TSL 1 (best) BASIC3.61□□□□□ -1.83
CLIP4Q8N3C7 FOXP2-224ENST00000635534 4290 ntTSL 5 BASIC3.61□□□□□ -1.83
CLIP4Q8N3C7 MYOT-202ENST00000421631 1474 ntTSL 2 BASIC3.6□□□□□ -1.83
CLIP4Q8N3C7 AC024560.2-201ENST00000507981 1497 ntBASIC3.6□□□□□ -1.83
CLIP4Q8N3C7 FAM126B-202ENST00000418596 9333 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
CLIP4Q8N3C7 CAPS2-206ENST00000409799 1859 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
CLIP4Q8N3C7 DPY19L2P2-203ENST00000435536 1858 ntBASIC3.6□□□□□ -1.83
CLIP4Q8N3C7 PABPC1P7-201ENST00000413177 1513 ntBASIC3.6□□□□□ -1.83
CLIP4Q8N3C7 WHAMMP2-201ENST00000512149 5482 ntTSL 5 BASIC3.6□□□□□ -1.83
CLIP4Q8N3C7 DMXL1-201ENST00000311085 11072 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
CLIP4Q8N3C7 ZBTB37-201ENST00000367701 19128 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
CLIP4Q8N3C7 CAB39L-206ENST00000410043 1627 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
CLIP4Q8N3C7 MS4A14-208ENST00000531783 2910 ntAPPRIS ALT2 TSL 5 BASIC3.6□□□□□ -1.83
CLIP4Q8N3C7 XKR3-201ENST00000331428 1690 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
CLIP4Q8N3C7 RLIMP1-201ENST00000339626 1680 ntBASIC3.6□□□□□ -1.83
CLIP4Q8N3C7 OR5B3-201ENST00000309403 945 ntAPPRIS P1 BASIC3.6□□□□□ -1.83
CLIP4Q8N3C7 HSFY1-202ENST00000309834 1038 ntAPPRIS ALT2 TSL 1 (best) BASIC3.6□□□□□ -1.83
CLIP4Q8N3C7 HSFY2-202ENST00000344884 1038 ntAPPRIS ALT2 TSL 1 (best) BASIC3.6□□□□□ -1.83
CLIP4Q8N3C7 MIR184-201ENST00000384962 84 ntBASIC3.6□□□□□ -1.83
CLIP4Q8N3C7 RPA3-203ENST00000401447 414 ntTSL 3 BASIC3.6□□□□□ -1.83
CLIP4Q8N3C7 AL359704.1-201ENST00000411586 781 ntBASIC3.6□□□□□ -1.83
CLIP4Q8N3C7 AC127391.1-201ENST00000411737 98 ntBASIC3.6□□□□□ -1.83
CLIP4Q8N3C7 AL078590.1-201ENST00000412602 479 ntTSL 3 BASIC3.6□□□□□ -1.83
CLIP4Q8N3C7 SLC8A1-AS1-201ENST00000413479 800 ntTSL 5 BASIC3.6□□□□□ -1.83
CLIP4Q8N3C7 AL391704.1-203ENST00000414903 462 ntTSL 3 BASIC3.6□□□□□ -1.83
CLIP4Q8N3C7 AL138826.1-202ENST00000415106 692 ntAPPRIS P1 TSL 2 BASIC3.6□□□□□ -1.83
CLIP4Q8N3C7 AL356095.1-201ENST00000417217 199 ntBASIC3.6□□□□□ -1.83
CLIP4Q8N3C7 AL807761.1-201ENST00000417622 171 ntBASIC3.6□□□□□ -1.83
CLIP4Q8N3C7 AL589765.2-201ENST00000420382 424 ntTSL 3 BASIC3.6□□□□□ -1.83
CLIP4Q8N3C7 MTCYBP24-201ENST00000420387 1106 ntBASIC3.6□□□□□ -1.83
CLIP4Q8N3C7 NBDY-202ENST00000423617 543 ntAPPRIS P1 TSL 2 BASIC3.6□□□□□ -1.83
CLIP4Q8N3C7 AL353777.1-201ENST00000425552 326 ntBASIC3.6□□□□□ -1.83
CLIP4Q8N3C7 GAS5-208ENST00000425771 242 ntTSL 3 BASIC3.6□□□□□ -1.83
CLIP4Q8N3C7 AC114808.2-201ENST00000428335 536 ntTSL 4 BASIC3.6□□□□□ -1.83
CLIP4Q8N3C7 PCDH9-AS1-201ENST00000430861 532 ntTSL 2 BASIC3.6□□□□□ -1.83
CLIP4Q8N3C7 RPL31P35-201ENST00000431058 377 ntBASIC3.6□□□□□ -1.83
CLIP4Q8N3C7 LINC01626-201ENST00000431997 452 ntTSL 3 BASIC3.6□□□□□ -1.83
CLIP4Q8N3C7 AC000111.3-201ENST00000433478 193 ntBASIC3.6□□□□□ -1.83
CLIP4Q8N3C7 AC127537.2-201ENST00000439258 465 ntBASIC3.6□□□□□ -1.83
CLIP4Q8N3C7 RPL7P52-201ENST00000449200 742 ntBASIC3.6□□□□□ -1.83
CLIP4Q8N3C7 AL391427.1-201ENST00000451575 425 ntTSL 3 BASIC3.6□□□□□ -1.83
CLIP4Q8N3C7 IQCG-204ENST00000453254 1230 ntTSL 2 BASIC3.6□□□□□ -1.83
CLIP4Q8N3C7 AC073486.1-201ENST00000453278 531 ntTSL 5 BASIC3.6□□□□□ -1.83
CLIP4Q8N3C7 ANP32BP2-201ENST00000454525 545 ntBASIC3.6□□□□□ -1.83
CLIP4Q8N3C7 C1DP4-201ENST00000455429 424 ntBASIC3.6□□□□□ -1.83
CLIP4Q8N3C7 AC096554.1-201ENST00000458182 529 ntTSL 5 BASIC3.6□□□□□ -1.83
CLIP4Q8N3C7 RPL23AP14-201ENST00000468281 468 ntBASIC3.6□□□□□ -1.83
CLIP4Q8N3C7 IGKV2-30-201ENST00000468494 390 ntAPPRIS P1 BASIC3.6□□□□□ -1.83
CLIP4Q8N3C7 OR5H5P-201ENST00000503164 928 ntBASIC3.6□□□□□ -1.83
CLIP4Q8N3C7 AC019235.1-201ENST00000503847 207 ntBASIC3.6□□□□□ -1.83
CLIP4Q8N3C7 LINC02379-201ENST00000505741 300 ntTSL 3 BASIC3.6□□□□□ -1.83
CLIP4Q8N3C7 AC107398.2-201ENST00000508081 601 ntTSL 5 BASIC3.6□□□□□ -1.83
CLIP4Q8N3C7 IGKV2D-36-201ENST00000518643 226 ntBASIC3.6□□□□□ -1.83
CLIP4Q8N3C7 AC087369.1-201ENST00000520775 996 ntBASIC3.6□□□□□ -1.83
CLIP4Q8N3C7 AC064807.2-201ENST00000521188 672 ntTSL 3 BASIC3.6□□□□□ -1.83
CLIP4Q8N3C7 AC087341.1-201ENST00000521490 491 ntTSL 2 BASIC3.6□□□□□ -1.83
CLIP4Q8N3C7 AP001893.2-201ENST00000526949 202 ntBASIC3.6□□□□□ -1.83
CLIP4Q8N3C7 OR5AQ1P-201ENST00000527596 927 ntBASIC3.6□□□□□ -1.83
CLIP4Q8N3C7 STX3-204ENST00000530221 534 ntTSL 5 BASIC3.6□□□□□ -1.83
CLIP4Q8N3C7 OR8L1P-201ENST00000534005 955 ntBASIC3.6□□□□□ -1.83
CLIP4Q8N3C7 AC123904.2-201ENST00000548059 300 ntBASIC3.6□□□□□ -1.83
CLIP4Q8N3C7 MEG8-218ENST00000556720 456 ntTSL 3 BASIC3.6□□□□□ -1.83
CLIP4Q8N3C7 AC079070.1-201ENST00000578740 555 ntTSL 2 BASIC3.6□□□□□ -1.83
CLIP4Q8N3C7 LINC00649-204ENST00000593977 640 ntTSL 5 BASIC3.6□□□□□ -1.83
CLIP4Q8N3C7 AC115621.1-201ENST00000604653 858 ntBASIC3.6□□□□□ -1.83
CLIP4Q8N3C7 BRDTP1-201ENST00000605735 677 ntBASIC3.6□□□□□ -1.83
CLIP4Q8N3C7 AL133173.2-201ENST00000614270 90 ntBASIC3.6□□□□□ -1.83
CLIP4Q8N3C7 CYLC1-202ENST00000621735 379 ntAPPRIS ALT2 TSL 3 BASIC3.6□□□□□ -1.83
CLIP4Q8N3C7 LRRC77P-213ENST00000637727 880 ntBASIC3.6□□□□□ -1.83
CLIP4Q8N3C7 AC092017.3-201ENST00000638880 536 ntAPPRIS P1 TSL 5 BASIC3.6□□□□□ -1.83
CLIP4Q8N3C7 OR5B3-202ENST00000641865 1046 ntAPPRIS P1 BASIC3.6□□□□□ -1.83
CLIP4Q8N3C7 CNGB3-201ENST00000320005 4347 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
CLIP4Q8N3C7 PLAG1-201ENST00000316981 7322 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
CLIP4Q8N3C7 GPRC6A-203ENST00000530250 2310 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
CLIP4Q8N3C7 NPSR1-AS1-205ENST00000436945 1406 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
CLIP4Q8N3C7 NMD3P1-201ENST00000439704 1488 ntBASIC3.6□□□□□ -1.83
CLIP4Q8N3C7 MGA-211ENST00000570161 11859 ntAPPRIS P4 TSL 5 BASIC3.59□□□□□ -1.83
CLIP4Q8N3C7 C8orf34-202ENST00000337103 3652 ntAPPRIS ALT2 TSL 1 (best) BASIC3.59□□□□□ -1.83
CLIP4Q8N3C7 C5orf42-205ENST00000508244 11062 ntAPPRIS P2 TSL 5 BASIC3.59□□□□□ -1.83
CLIP4Q8N3C7 CR848007.1-201ENST00000442354 1699 ntBASIC3.59□□□□□ -1.83
CLIP4Q8N3C7 TUG1-201ENST00000519077 5673 ntTSL 1 (best) BASIC3.59□□□□□ -1.83
CLIP4Q8N3C7 KIF15-203ENST00000425755 3460 ntTSL 5 BASIC3.59□□□□□ -1.83
CLIP4Q8N3C7 CENPJ-205ENST00000545981 4299 ntTSL 2 BASIC3.59□□□□□ -1.83
CLIP4Q8N3C7 SCEL-202ENST00000377246 3081 ntAPPRIS ALT2 TSL 1 (best) BASIC3.59□□□□□ -1.83
CLIP4Q8N3C7 MBD5-212ENST00000627651 5610 ntTSL 5 BASIC3.59□□□□□ -1.83
CLIP4Q8N3C7 FRG1BP-201ENST00000278882 761 ntBASIC3.59□□□□□ -1.83
CLIP4Q8N3C7 OR6C70-201ENST00000327335 939 ntAPPRIS P1 BASIC3.59□□□□□ -1.83
CLIP4Q8N3C7 Y_RNA.409-201ENST00000383990 98 ntBASIC3.59□□□□□ -1.83
CLIP4Q8N3C7 RNU6-1207P-201ENST00000384343 107 ntBASIC3.59□□□□□ -1.83
CLIP4Q8N3C7 AL590704.1-201ENST00000402856 794 ntBASIC3.59□□□□□ -1.83
CLIP4Q8N3C7 RNU2-8P-201ENST00000410727 190 ntBASIC3.59□□□□□ -1.83
CLIP4Q8N3C7 AC079150.1-201ENST00000413043 383 ntTSL 3 BASIC3.59□□□□□ -1.83
CLIP4Q8N3C7 USP9YP6-201ENST00000413550 854 ntBASIC3.59□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 96.5 ms