Protein–RNA interactions for Protein: Q02388

COL7A1, Collagen alpha-1(VII) chain, humanhuman

Predictions only

Length 2,944 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1Q02388 AL157834.3-201ENST00000615543 103 ntBASIC1.19□□□□□ -2.22
COL7A1Q02388 RFC1-217ENST00000639695 867 ntTSL 5 BASIC1.19□□□□□ -2.22
COL7A1Q02388 AC011124.2-201ENST00000518739 3222 ntTSL 1 (best) BASIC1.19□□□□□ -2.22
COL7A1Q02388 LUZP4-201ENST00000371920 1701 ntAPPRIS P2 TSL 1 (best) BASIC1.19□□□□□ -2.22
COL7A1Q02388 RNA5SP160-201ENST00000364866 120 ntBASIC1.19□□□□□ -2.22
COL7A1Q02388 DEFB109C-201ENST00000382575 264 ntBASIC1.19□□□□□ -2.22
COL7A1Q02388 DEFB109B-201ENST00000382656 264 ntBASIC1.19□□□□□ -2.22
COL7A1Q02388 CD3D-202ENST00000392884 476 ntTSL 2 BASIC1.19□□□□□ -2.22
COL7A1Q02388 RNA5SP181-201ENST00000410246 98 ntBASIC1.19□□□□□ -2.22
COL7A1Q02388 PAICSP7-201ENST00000419829 962 ntBASIC1.19□□□□□ -2.22
COL7A1Q02388 AL022400.1-201ENST00000423946 935 ntBASIC1.19□□□□□ -2.22
COL7A1Q02388 TRIAP1P1-201ENST00000427062 225 ntBASIC1.19□□□□□ -2.22
COL7A1Q02388 AC244505.5-201ENST00000443639 207 ntBASIC1.19□□□□□ -2.22
COL7A1Q02388 AC011979.1-201ENST00000472300 483 ntBASIC1.19□□□□□ -2.22
COL7A1Q02388 RPL31P41-201ENST00000477967 372 ntBASIC1.19□□□□□ -2.22
COL7A1Q02388 AC104435.1-201ENST00000483483 166 ntBASIC1.19□□□□□ -2.22
COL7A1Q02388 AC109464.2-201ENST00000510242 943 ntBASIC1.19□□□□□ -2.22
COL7A1Q02388 AP000553.5-201ENST00000641933 54 ntBASIC1.19□□□□□ -2.22
COL7A1Q02388 LUM-201ENST00000266718 3008 ntAPPRIS P1 TSL 1 (best) BASIC1.19□□□□□ -2.22
COL7A1Q02388 ART3-202ENST00000349321 1528 ntAPPRIS P3 TSL 1 (best) BASIC1.18□□□□□ -2.22
COL7A1Q02388 SEPT7-205ENST00000432293 1362 ntTSL 1 (best) BASIC1.18□□□□□ -2.22
COL7A1Q02388 SKIL-202ENST00000413427 2702 ntTSL 1 (best) BASIC1.18□□□□□ -2.22
COL7A1Q02388 AL138785.1-201ENST00000425821 331 ntBASIC1.18□□□□□ -2.22
COL7A1Q02388 AGBL4-IT1-201ENST00000457061 514 ntTSL 3 BASIC1.18□□□□□ -2.22
COL7A1Q02388 MTND5P4-201ENST00000514978 288 ntBASIC1.18□□□□□ -2.22
COL7A1Q02388 PARPBP-212ENST00000543784 992 ntTSL 2 BASIC1.18□□□□□ -2.22
COL7A1Q02388 AC093025.1-201ENST00000547795 569 ntTSL 2 BASIC1.18□□□□□ -2.22
COL7A1Q02388 SNORD53B-201ENST00000577887 78 ntBASIC1.18□□□□□ -2.22
COL7A1Q02388 LIVAR-201ENST00000578633 384 ntTSL 3 BASIC1.18□□□□□ -2.22
COL7A1Q02388 MAGOH2P-202ENST00000584384 429 ntBASIC1.18□□□□□ -2.22
COL7A1Q02388 AC008687.2-201ENST00000597865 520 ntBASIC1.18□□□□□ -2.22
COL7A1Q02388 AC012640.5-201ENST00000623897 319 ntBASIC1.18□□□□□ -2.22
COL7A1Q02388 AC068544.1-201ENST00000635064 248 ntTSL 5 BASIC1.18□□□□□ -2.22
COL7A1Q02388 CDC27P3-201ENST00000635418 1910 ntBASIC1.18□□□□□ -2.22
COL7A1Q02388 ZNF876P-202ENST00000398732 1485 ntBASIC1.18□□□□□ -2.22
COL7A1Q02388 PYGO1-201ENST00000302000 8488 ntTSL 1 (best) BASIC1.18□□□□□ -2.22
COL7A1Q02388 SLC44A3-AS1-205ENST00000424505 612 ntBASIC1.18□□□□□ -2.22
COL7A1Q02388 HIGD1AP11-201ENST00000438361 280 ntBASIC1.18□□□□□ -2.22
COL7A1Q02388 AC005703.2-201ENST00000453339 343 ntTSL 2 BASIC1.18□□□□□ -2.22
COL7A1Q02388 AC109471.1-201ENST00000511631 612 ntBASIC1.18□□□□□ -2.22
COL7A1Q02388 AC010280.3-201ENST00000515504 587 ntTSL 4 BASIC1.18□□□□□ -2.22
COL7A1Q02388 AC022039.1-201ENST00000527110 488 ntTSL 2 BASIC1.18□□□□□ -2.22
COL7A1Q02388 AC090092.1-201ENST00000530576 510 ntTSL 2 BASIC1.18□□□□□ -2.22
COL7A1Q02388 GLYCAM1-201ENST00000546596 285 ntBASIC1.18□□□□□ -2.22
COL7A1Q02388 AC015908.2-202ENST00000585243 756 ntTSL 3 BASIC1.18□□□□□ -2.22
COL7A1Q02388 AL591030.1-201ENST00000626131 627 ntTSL 3 BASIC1.18□□□□□ -2.22
COL7A1Q02388 BX649567.1-201ENST00000642071 1134 ntBASIC1.18□□□□□ -2.22
COL7A1Q02388 RNA5SP457-201ENST00000363657 124 ntBASIC1.17□□□□□ -2.22
COL7A1Q02388 RNU4-51P-201ENST00000364206 140 ntBASIC1.17□□□□□ -2.22
COL7A1Q02388 Y_RNA.303-201ENST00000364998 94 ntBASIC1.17□□□□□ -2.22
COL7A1Q02388 RNU6-174P-201ENST00000410406 106 ntBASIC1.17□□□□□ -2.22
COL7A1Q02388 RNA5SP338-201ENST00000410495 85 ntBASIC1.17□□□□□ -2.22
COL7A1Q02388 AC007179.2-204ENST00000444001 765 ntTSL 3 BASIC1.17□□□□□ -2.22
COL7A1Q02388 AL138787.2-202ENST00000479395 385 ntTSL 2 BASIC1.17□□□□□ -2.22
COL7A1Q02388 AC114801.2-201ENST00000503825 781 ntBASIC1.17□□□□□ -2.22
COL7A1Q02388 TBCAP3-201ENST00000512475 312 ntBASIC1.17□□□□□ -2.22
COL7A1Q02388 AC012413.1-201ENST00000521294 519 ntTSL 2 BASIC1.17□□□□□ -2.22
COL7A1Q02388 AC010511.1-202ENST00000590229 573 ntTSL 4 BASIC1.17□□□□□ -2.22
COL7A1Q02388 AC012531.5-201ENST00000611375 151 ntBASIC1.17□□□□□ -2.22
COL7A1Q02388 AL137847.3-201ENST00000611521 109 ntBASIC1.17□□□□□ -2.22
COL7A1Q02388 TRAPPC13-208ENST00000505553 1410 ntAPPRIS ALT1 TSL 1 (best) BASIC1.17□□□□□ -2.22
COL7A1Q02388 OGN-201ENST00000262551 2971 ntAPPRIS P1 TSL 5 BASIC1.17□□□□□ -2.22
COL7A1Q02388 RNU1-93P-201ENST00000364704 169 ntBASIC1.17□□□□□ -2.22
COL7A1Q02388 AL096701.2-201ENST00000416920 238 ntBASIC1.17□□□□□ -2.22
COL7A1Q02388 AC005517.2-201ENST00000424673 553 ntBASIC1.17□□□□□ -2.22
COL7A1Q02388 RSL24D1P2-201ENST00000445584 366 ntBASIC1.17□□□□□ -2.22
COL7A1Q02388 AC011196.1-201ENST00000451816 595 ntTSL 2 BASIC1.17□□□□□ -2.22
COL7A1Q02388 AC010976.1-211ENST00000454503 644 ntTSL 2 BASIC1.17□□□□□ -2.22
COL7A1Q02388 AC006148.2-201ENST00000467017 650 ntTSL 2 BASIC1.17□□□□□ -2.22
COL7A1Q02388 AP000926.1-201ENST00000479573 241 ntBASIC1.17□□□□□ -2.22
COL7A1Q02388 AC090071.1-201ENST00000507713 644 ntBASIC1.17□□□□□ -2.22
COL7A1Q02388 CTAGE1-202ENST00000525417 1267 ntAPPRIS ALT2 BASIC1.17□□□□□ -2.22
COL7A1Q02388 AC011824.2-201ENST00000579896 579 ntTSL 4 BASIC1.17□□□□□ -2.22
COL7A1Q02388 AC090398.1-202ENST00000580403 457 ntTSL 2 BASIC1.17□□□□□ -2.22
COL7A1Q02388 AC010320.2-202ENST00000599125 595 ntTSL 4 BASIC1.17□□□□□ -2.22
COL7A1Q02388 LRRD1-203ENST00000430130 2661 ntAPPRIS P1 TSL 5 BASIC1.17□□□□□ -2.22
COL7A1Q02388 AL512283.1-201ENST00000606756 1384 ntBASIC1.16□□□□□ -2.22
COL7A1Q02388 SNORA79B-201ENST00000410557 148 ntBASIC1.16□□□□□ -2.22
COL7A1Q02388 HMGN2P18-201ENST00000450680 270 ntBASIC1.16□□□□□ -2.22
COL7A1Q02388 AC089999.1-201ENST00000460336 374 ntBASIC1.16□□□□□ -2.22
COL7A1Q02388 AC015720.1-201ENST00000565251 277 ntBASIC1.16□□□□□ -2.22
COL7A1Q02388 MTATP6P3-201ENST00000581686 676 ntBASIC1.16□□□□□ -2.22
COL7A1Q02388 AC098679.5-201ENST00000624394 571 ntBASIC1.16□□□□□ -2.22
COL7A1Q02388 AC244517.7-201ENST00000625144 398 ntTSL 3 BASIC1.16□□□□□ -2.22
COL7A1Q02388 CCDC158-202ENST00000434846 1728 ntTSL 1 (best) BASIC1.16□□□□□ -2.22
COL7A1Q02388 RGS18-201ENST00000367460 2150 ntAPPRIS P1 TSL 1 (best) BASIC1.16□□□□□ -2.22
COL7A1Q02388 HMGB3P2-201ENST00000411913 584 ntBASIC1.16□□□□□ -2.22
COL7A1Q02388 AL590783.1-201ENST00000424138 456 ntTSL 2 BASIC1.16□□□□□ -2.22
COL7A1Q02388 MTCO3P30-201ENST00000426425 670 ntBASIC1.16□□□□□ -2.22
COL7A1Q02388 AC009474.2-201ENST00000451383 136 ntBASIC1.16□□□□□ -2.22
COL7A1Q02388 AIG1P1-201ENST00000503376 148 ntBASIC1.16□□□□□ -2.22
COL7A1Q02388 SUMO2P6-201ENST00000505273 288 ntBASIC1.16□□□□□ -2.22
COL7A1Q02388 RNU6ATAC39P-201ENST00000516309 149 ntBASIC1.16□□□□□ -2.22
COL7A1Q02388 RNU6-826P-201ENST00000516827 104 ntBASIC1.16□□□□□ -2.22
COL7A1Q02388 AC025043.1-201ENST00000558047 625 ntTSL 2 BASIC1.16□□□□□ -2.22
COL7A1Q02388 AC090751.1-201ENST00000566966 267 ntBASIC1.16□□□□□ -2.22
COL7A1Q02388 CR936218.1-201ENST00000570454 304 ntTSL 2 BASIC1.16□□□□□ -2.22
COL7A1Q02388 AC009314.1-201ENST00000603871 304 ntBASIC1.16□□□□□ -2.22
COL7A1Q02388 VIS1.1-201ENST00000610517 203 ntBASIC1.16□□□□□ -2.22
COL7A1Q02388 AC008121.3-201ENST00000618726 433 ntBASIC1.16□□□□□ -2.22
Retrieved 100 of 98,524 protein–RNA pairs in 86.1 ms