Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 AC016903.2-201ENST00000456384 326 ntTSL 3 BASIC2.24□□□□□ -2.05
FOXA1P55317 TRBV26-201ENST00000456572 344 ntBASIC2.24□□□□□ -2.05
FOXA1P55317 RN7SL432P-201ENST00000484057 298 ntBASIC2.24□□□□□ -2.05
FOXA1P55317 AC093297.2-207ENST00000505401 692 ntTSL 3 BASIC2.24□□□□□ -2.05
FOXA1P55317 AC004062.1-201ENST00000509926 645 ntBASIC2.24□□□□□ -2.05
FOXA1P55317 XKRY-201ENST00000510392 1100 ntBASIC2.24□□□□□ -2.05
FOXA1P55317 LINC02100-201ENST00000512978 238 ntTSL 3 BASIC2.24□□□□□ -2.05
FOXA1P55317 AC106895.1-201ENST00000515825 548 ntTSL 4 BASIC2.24□□□□□ -2.05
FOXA1P55317 RNU1-61P-201ENST00000516107 151 ntBASIC2.24□□□□□ -2.05
FOXA1P55317 RNU6ATAC9P-201ENST00000516210 116 ntBASIC2.24□□□□□ -2.05
FOXA1P55317 SNORA31.15-201ENST00000516771 132 ntBASIC2.24□□□□□ -2.05
FOXA1P55317 SNORA31.20-201ENST00000517111 133 ntBASIC2.24□□□□□ -2.05
FOXA1P55317 LINC00824-201ENST00000517583 805 ntTSL 5 BASIC2.24□□□□□ -2.05
FOXA1P55317 IGHVIII-5-1-201ENST00000523059 99 ntBASIC2.24□□□□□ -2.05
FOXA1P55317 AC021269.2-201ENST00000532318 330 ntBASIC2.24□□□□□ -2.05
FOXA1P55317 AP000889.2-201ENST00000532684 490 ntBASIC2.24□□□□□ -2.05
FOXA1P55317 SMILR-201ENST00000533992 553 ntTSL 4 BASIC2.24□□□□□ -2.05
FOXA1P55317 PDZD9-203ENST00000537222 1068 ntTSL 3 BASIC2.24□□□□□ -2.05
FOXA1P55317 AC084819.1-201ENST00000537293 424 ntTSL 1 (best) BASIC2.24□□□□□ -2.05
FOXA1P55317 AC011773.3-201ENST00000546501 589 ntTSL 3 BASIC2.24□□□□□ -2.05
FOXA1P55317 LSM6P2-201ENST00000552208 177 ntBASIC2.24□□□□□ -2.05
FOXA1P55317 AL162311.1-201ENST00000553046 601 ntTSL 3 BASIC2.24□□□□□ -2.05
FOXA1P55317 CMC2-208ENST00000564249 890 ntAPPRIS P1 TSL 5 BASIC2.24□□□□□ -2.05
FOXA1P55317 AL161896.1-201ENST00000597248 508 ntTSL 4 BASIC2.24□□□□□ -2.05
FOXA1P55317 AL353811.1-201ENST00000602851 736 ntTSL 5 BASIC2.24□□□□□ -2.05
FOXA1P55317 AC103881.1-201ENST00000603476 538 ntBASIC2.24□□□□□ -2.05
FOXA1P55317 AC019159.1-201ENST00000605094 187 ntBASIC2.24□□□□□ -2.05
FOXA1P55317 CR381572.1-201ENST00000625098 102 ntBASIC2.24□□□□□ -2.05
FOXA1P55317 AC012594.1-272ENST00000625790 710 ntTSL 5 BASIC2.24□□□□□ -2.05
FOXA1P55317 SATB1-AS1-237ENST00000626982 735 ntTSL 5 BASIC2.24□□□□□ -2.05
FOXA1P55317 AC130650.2-201ENST00000618736 2403 ntBASIC2.24□□□□□ -2.05
FOXA1P55317 PCDH11Y-201ENST00000215473 4595 ntAPPRIS ALT2 TSL 1 (best) BASIC2.24□□□□□ -2.05
FOXA1P55317 SKIL-203ENST00000426052 2757 ntTSL 2 BASIC2.24□□□□□ -2.05
FOXA1P55317 RAD21-210ENST00000523986 2506 ntTSL 2 BASIC2.24□□□□□ -2.05
FOXA1P55317 TRAPPC13-208ENST00000505553 1410 ntAPPRIS ALT1 TSL 1 (best) BASIC2.24□□□□□ -2.05
FOXA1P55317 AC244517.1-201ENST00000606030 2086 ntBASIC2.24□□□□□ -2.05
FOXA1P55317 CFHR3-201ENST00000367425 1645 ntAPPRIS P1 TSL 1 (best) BASIC2.24□□□□□ -2.05
FOXA1P55317 AC073130.1-201ENST00000457033 1958 ntTSL 2 BASIC2.23□□□□□ -2.05
FOXA1P55317 RNA5SP258-201ENST00000362750 119 ntBASIC2.23□□□□□ -2.05
FOXA1P55317 SNORD56.5-201ENST00000364281 72 ntBASIC2.23□□□□□ -2.05
FOXA1P55317 RNU6-115P-201ENST00000364310 107 ntBASIC2.23□□□□□ -2.05
FOXA1P55317 SPHAR-201ENST00000366688 648 ntAPPRIS P1 BASIC2.23□□□□□ -2.05
FOXA1P55317 RNU6-730P-201ENST00000383954 104 ntBASIC2.23□□□□□ -2.05
FOXA1P55317 RNU6-468P-201ENST00000384003 109 ntBASIC2.23□□□□□ -2.05
FOXA1P55317 RNU6-549P-201ENST00000384433 107 ntBASIC2.23□□□□□ -2.05
FOXA1P55317 TRAV24-201ENST00000390453 343 ntAPPRIS P1 BASIC2.23□□□□□ -2.05
FOXA1P55317 TMSB4XP8-201ENST00000402089 135 ntBASIC2.23□□□□□ -2.05
FOXA1P55317 MTND4LP20-201ENST00000402379 270 ntBASIC2.23□□□□□ -2.05
FOXA1P55317 AL139098.1-201ENST00000407291 389 ntBASIC2.23□□□□□ -2.05
FOXA1P55317 RN7SKP140-201ENST00000411196 284 ntBASIC2.23□□□□□ -2.05
FOXA1P55317 RNU6-575P-201ENST00000411326 105 ntBASIC2.23□□□□□ -2.05
FOXA1P55317 TMSB4XP6-201ENST00000415187 135 ntBASIC2.23□□□□□ -2.05
FOXA1P55317 AC093865.1-201ENST00000415387 433 ntTSL 3 BASIC2.23□□□□□ -2.05
FOXA1P55317 AC009276.1-201ENST00000422042 253 ntTSL 5 BASIC2.23□□□□□ -2.05
FOXA1P55317 TMSB4XP1-201ENST00000424567 135 ntBASIC2.23□□□□□ -2.05
FOXA1P55317 RPL31P54-201ENST00000429803 370 ntBASIC2.23□□□□□ -2.05
FOXA1P55317 AC008067.1-203ENST00000430876 359 ntTSL 3 BASIC2.23□□□□□ -2.05
FOXA1P55317 TCF7L1-IT1-201ENST00000433581 458 ntTSL 3 BASIC2.23□□□□□ -2.05
FOXA1P55317 AC078845.1-202ENST00000435996 733 ntTSL 3 BASIC2.23□□□□□ -2.05
FOXA1P55317 AC018359.1-201ENST00000442567 574 ntTSL 4 BASIC2.23□□□□□ -2.05
FOXA1P55317 Z96811.1-201ENST00000445880 108 ntBASIC2.23□□□□□ -2.05
FOXA1P55317 SEPT14P24-201ENST00000447236 180 ntBASIC2.23□□□□□ -2.05
FOXA1P55317 AC004022.1-201ENST00000447766 1066 ntBASIC2.23□□□□□ -2.05
FOXA1P55317 AL589935.1-212ENST00000450998 525 ntTSL 2 BASIC2.23□□□□□ -2.05
FOXA1P55317 RPS24P6-201ENST00000452670 400 ntBASIC2.23□□□□□ -2.05
FOXA1P55317 AL109741.2-201ENST00000455561 343 ntBASIC2.23□□□□□ -2.05
FOXA1P55317 RN7SL429P-201ENST00000479090 223 ntBASIC2.23□□□□□ -2.05
FOXA1P55317 RN7SL489P-201ENST00000486185 223 ntBASIC2.23□□□□□ -2.05
FOXA1P55317 RN7SL327P-201ENST00000488659 223 ntBASIC2.23□□□□□ -2.05
FOXA1P55317 AC092666.1-201ENST00000492054 573 ntTSL 4 BASIC2.23□□□□□ -2.05
FOXA1P55317 AC113347.4-201ENST00000506032 685 ntTSL 3 BASIC2.23□□□□□ -2.05
FOXA1P55317 AC234781.5-201ENST00000508429 271 ntBASIC2.23□□□□□ -2.05
FOXA1P55317 RNU6-885P-201ENST00000516607 104 ntBASIC2.23□□□□□ -2.05
FOXA1P55317 RNU4ATAC10P-201ENST00000516967 122 ntBASIC2.23□□□□□ -2.05
FOXA1P55317 RPL7P20-201ENST00000520308 745 ntBASIC2.23□□□□□ -2.05
FOXA1P55317 AC125611.2-201ENST00000551907 647 ntBASIC2.23□□□□□ -2.05
FOXA1P55317 AC023824.4-201ENST00000562572 476 ntTSL 3 BASIC2.23□□□□□ -2.05
FOXA1P55317 AC234778.2-201ENST00000566241 354 ntBASIC2.23□□□□□ -2.05
FOXA1P55317 AC025281.1-201ENST00000567026 265 ntBASIC2.23□□□□□ -2.05
FOXA1P55317 MIR3162-201ENST00000581818 82 ntBASIC2.23□□□□□ -2.05
FOXA1P55317 SNORD84-203ENST00000584275 78 ntBASIC2.23□□□□□ -2.05
FOXA1P55317 XIAPP1-201ENST00000603162 600 ntBASIC2.23□□□□□ -2.05
FOXA1P55317 RPL23AP92-201ENST00000603609 255 ntBASIC2.23□□□□□ -2.05
FOXA1P55317 THRA1/BTR-203ENST00000604191 571 ntTSL 4 BASIC2.23□□□□□ -2.05
FOXA1P55317 AC026523.1-201ENST00000617221 490 ntTSL 5 BASIC2.23□□□□□ -2.05
FOXA1P55317 RN7SL853P-201ENST00000617250 223 ntBASIC2.23□□□□□ -2.05
FOXA1P55317 AC073968.1-201ENST00000618594 637 ntBASIC2.23□□□□□ -2.05
FOXA1P55317 AC093875.1-201ENST00000623688 504 ntBASIC2.23□□□□□ -2.05
FOXA1P55317 AP003122.6-201ENST00000623831 495 ntBASIC2.23□□□□□ -2.05
FOXA1P55317 ARHGAP28-204ENST00000419673 5492 ntAPPRIS P2 TSL 1 (best) BASIC2.23□□□□□ -2.05
FOXA1P55317 SOBP-204ENST00000618129 1550 ntTSL 1 (best) BASIC2.23□□□□□ -2.05
FOXA1P55317 GYPA-202ENST00000360771 2659 ntAPPRIS P3 TSL 1 (best) BASIC2.23□□□□□ -2.05
FOXA1P55317 SLC4A7-201ENST00000295736 7757 ntAPPRIS P3 TSL 1 (best) BASIC2.23□□□□□ -2.05
FOXA1P55317 RNU6-582P-201ENST00000362989 107 ntBASIC2.22□□□□□ -2.05
FOXA1P55317 HTN3-201ENST00000381057 493 ntAPPRIS ALT2 TSL 2 BASIC2.22□□□□□ -2.05
FOXA1P55317 SNORD116-23-201ENST00000384645 92 ntBASIC2.22□□□□□ -2.05
FOXA1P55317 AL591416.1-201ENST00000404015 867 ntBASIC2.22□□□□□ -2.05
FOXA1P55317 AL023807.1-201ENST00000407932 359 ntBASIC2.22□□□□□ -2.05
FOXA1P55317 RNU4-65P-201ENST00000410473 140 ntBASIC2.22□□□□□ -2.05
FOXA1P55317 BX682237.1-201ENST00000415016 335 ntBASIC2.22□□□□□ -2.05
Retrieved 100 of 98,524 protein–RNA pairs in 102 ms