Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 AC006020.1-201ENST00000420179 1854 ntBASIC2.77□□□□□ -1.97
COL4A4P53420 MS4A14-202ENST00000395001 3401 ntTSL 5 BASIC2.77□□□□□ -1.97
COL4A4P53420 AC111188.2-201ENST00000529697 1387 ntBASIC2.77□□□□□ -1.97
COL4A4P53420 CEP290-202ENST00000397838 2421 ntTSL 5 BASIC2.77□□□□□ -1.97
COL4A4P53420 TTK-202ENST00000369798 3010 ntAPPRIS P3 TSL 1 (best) BASIC2.77□□□□□ -1.97
COL4A4P53420 RNU4-75P-201ENST00000364621 146 ntBASIC2.77□□□□□ -1.97
COL4A4P53420 C20orf187-201ENST00000378252 446 ntTSL 2 BASIC2.77□□□□□ -1.97
COL4A4P53420 OR51F1-201ENST00000380383 960 ntAPPRIS P5 BASIC2.77□□□□□ -1.97
COL4A4P53420 RNU6-517P-201ENST00000384362 110 ntBASIC2.77□□□□□ -1.97
COL4A4P53420 SLC9B1P2-201ENST00000398120 1184 ntBASIC2.77□□□□□ -1.97
COL4A4P53420 CoTC_ribozyme.1-201ENST00000408104 192 ntBASIC2.77□□□□□ -1.97
COL4A4P53420 RNA5SP129-201ENST00000410276 118 ntBASIC2.77□□□□□ -1.97
COL4A4P53420 RNU2-22P-201ENST00000411266 212 ntBASIC2.77□□□□□ -1.97
COL4A4P53420 FCF1P9-201ENST00000412546 282 ntBASIC2.77□□□□□ -1.97
COL4A4P53420 AL445183.3-201ENST00000414168 502 ntBASIC2.77□□□□□ -1.97
COL4A4P53420 LINC01661-201ENST00000415910 708 ntTSL 3 BASIC2.77□□□□□ -1.97
COL4A4P53420 XIST-201ENST00000416330 750 ntTSL 2 BASIC2.77□□□□□ -1.97
COL4A4P53420 RPS3AP37-201ENST00000419176 745 ntBASIC2.77□□□□□ -1.97
COL4A4P53420 MTCYBP29-201ENST00000436327 1006 ntBASIC2.77□□□□□ -1.97
COL4A4P53420 AL353705.4-201ENST00000449661 238 ntBASIC2.77□□□□□ -1.97
COL4A4P53420 NAALADL2-AS3-202ENST00000453180 413 ntTSL 3 BASIC2.77□□□□□ -1.97
COL4A4P53420 AL355997.1-202ENST00000454361 610 ntTSL 3 BASIC2.77□□□□□ -1.97
COL4A4P53420 AC093899.1-201ENST00000457984 376 ntBASIC2.77□□□□□ -1.97
COL4A4P53420 LINC02027-201ENST00000482617 596 ntTSL 5 BASIC2.77□□□□□ -1.97
COL4A4P53420 AC108748.1-201ENST00000487772 515 ntTSL 3 BASIC2.77□□□□□ -1.97
COL4A4P53420 MRPL36-203ENST00000505818 595 ntAPPRIS P1 TSL 3 BASIC2.77□□□□□ -1.97
COL4A4P53420 MTCO1P31-201ENST00000506355 492 ntBASIC2.77□□□□□ -1.97
COL4A4P53420 PAIP2-205ENST00000510080 858 ntAPPRIS P1 TSL 1 (best) BASIC2.77□□□□□ -1.97
COL4A4P53420 LTV1P1-201ENST00000510683 1237 ntBASIC2.77□□□□□ -1.97
COL4A4P53420 AC116353.3-201ENST00000511215 249 ntBASIC2.77□□□□□ -1.97
COL4A4P53420 AC025437.2-201ENST00000518103 548 ntTSL 4 BASIC2.77□□□□□ -1.97
COL4A4P53420 AC022509.2-201ENST00000540392 699 ntTSL 3 BASIC2.77□□□□□ -1.97
COL4A4P53420 AC087260.1-201ENST00000546118 401 ntTSL 5 BASIC2.77□□□□□ -1.97
COL4A4P53420 AC008126.1-201ENST00000549019 480 ntBASIC2.77□□□□□ -1.97
COL4A4P53420 AC105339.2-201ENST00000558342 1091 ntTSL 3 BASIC2.77□□□□□ -1.97
COL4A4P53420 AC016382.1-201ENST00000583580 387 ntTSL 3 BASIC2.77□□□□□ -1.97
COL4A4P53420 AP003973.1-201ENST00000604639 691 ntBASIC2.77□□□□□ -1.97
COL4A4P53420 AL353621.2-201ENST00000605340 133 ntBASIC2.77□□□□□ -1.97
COL4A4P53420 AC007349.4-201ENST00000608114 532 ntBASIC2.77□□□□□ -1.97
COL4A4P53420 PRKCQ-AS1-208ENST00000608453 587 ntTSL 5 BASIC2.77□□□□□ -1.97
COL4A4P53420 AL671511.2-201ENST00000611838 659 ntTSL 2 BASIC2.77□□□□□ -1.97
COL4A4P53420 CLECL1-204ENST00000621400 611 ntAPPRIS ALT2 TSL 5 BASIC2.77□□□□□ -1.97
COL4A4P53420 OR51F1-202ENST00000624103 939 ntAPPRIS ALT1 BASIC2.77□□□□□ -1.97
COL4A4P53420 AC007494.3-201ENST00000624660 743 ntBASIC2.77□□□□□ -1.97
COL4A4P53420 AC013470.2-206ENST00000636804 771 ntAPPRIS P5 TSL 5 BASIC2.77□□□□□ -1.97
COL4A4P53420 AC068137.3-201ENST00000639191 341 ntBASIC2.77□□□□□ -1.97
COL4A4P53420 AC073869.6-201ENST00000640656 341 ntBASIC2.77□□□□□ -1.97
COL4A4P53420 ADGRV1-201ENST00000405460 19557 ntAPPRIS P1 TSL 1 (best) BASIC2.77□□□□□ -1.97
COL4A4P53420 AC008432.1-201ENST00000615912 1320 ntBASIC2.77□□□□□ -1.97
COL4A4P53420 AC004925.1-201ENST00000624256 2706 ntBASIC2.77□□□□□ -1.97
COL4A4P53420 PKHD1L1-201ENST00000378402 13076 ntAPPRIS P1 TSL 1 (best) BASIC2.77□□□□□ -1.97
COL4A4P53420 OXR1-209ENST00000517566 4501 ntTSL 1 (best) BASIC2.77□□□□□ -1.97
COL4A4P53420 OR4G2P-202ENST00000641004 1759 ntBASIC2.77□□□□□ -1.97
COL4A4P53420 PPIP5K2-201ENST00000321521 15407 ntAPPRIS P3 TSL 5 BASIC2.77□□□□□ -1.97
COL4A4P53420 ROCK2-203ENST00000401753 4017 ntTSL 1 (best) BASIC2.76□□□□□ -1.97
COL4A4P53420 IL1RAPL2-201ENST00000344799 1290 ntTSL 5 BASIC2.76□□□□□ -1.97
COL4A4P53420 OR5AC2-201ENST00000358642 930 ntAPPRIS P1 BASIC2.76□□□□□ -1.97
COL4A4P53420 SNORD113-6-201ENST00000363345 75 ntBASIC2.76□□□□□ -1.97
COL4A4P53420 RNU1-100P-201ENST00000365255 165 ntBASIC2.76□□□□□ -1.97
COL4A4P53420 RNU6-468P-201ENST00000384003 109 ntBASIC2.76□□□□□ -1.97
COL4A4P53420 AF130351.1-202ENST00000400562 808 ntAPPRIS P5 TSL 3 BASIC2.76□□□□□ -1.97
COL4A4P53420 AC004022.2-201ENST00000413824 193 ntBASIC2.76□□□□□ -1.97
COL4A4P53420 AC007179.1-201ENST00000415159 438 ntTSL 3 BASIC2.76□□□□□ -1.97
COL4A4P53420 NDUFB4P5-201ENST00000415445 361 ntBASIC2.76□□□□□ -1.97
COL4A4P53420 AL008987.1-201ENST00000415528 237 ntBASIC2.76□□□□□ -1.97
COL4A4P53420 AC016831.2-201ENST00000417179 352 ntBASIC2.76□□□□□ -1.97
COL4A4P53420 AL593851.1-201ENST00000426171 157 ntBASIC2.76□□□□□ -1.97
COL4A4P53420 ZNF863P-201ENST00000426746 417 ntBASIC2.76□□□□□ -1.97
COL4A4P53420 NEK4P1-201ENST00000433383 879 ntBASIC2.76□□□□□ -1.97
COL4A4P53420 AC005019.2-201ENST00000434321 359 ntTSL 5 BASIC2.76□□□□□ -1.97
COL4A4P53420 AL392003.1-201ENST00000434394 243 ntBASIC2.76□□□□□ -1.97
COL4A4P53420 AL590103.1-201ENST00000434488 307 ntBASIC2.76□□□□□ -1.97
COL4A4P53420 MTCO2P16-201ENST00000436962 677 ntBASIC2.76□□□□□ -1.97
COL4A4P53420 RPS24P1-201ENST00000438550 371 ntBASIC2.76□□□□□ -1.97
COL4A4P53420 AC092013.1-201ENST00000438795 332 ntBASIC2.76□□□□□ -1.97
COL4A4P53420 AL359636.3-201ENST00000439471 301 ntTSL 2 BASIC2.76□□□□□ -1.97
COL4A4P53420 SPANXN4-202ENST00000446864 431 ntAPPRIS P2 TSL 1 (best) BASIC2.76□□□□□ -1.97
COL4A4P53420 HMGB1P15-201ENST00000453854 435 ntBASIC2.76□□□□□ -1.97
COL4A4P53420 LINC01038-201ENST00000457858 428 ntTSL 3 BASIC2.76□□□□□ -1.97
COL4A4P53420 RPL23AP11-201ENST00000475260 469 ntBASIC2.76□□□□□ -1.97
COL4A4P53420 AC016687.1-201ENST00000482574 353 ntBASIC2.76□□□□□ -1.97
COL4A4P53420 NPY1R-204ENST00000509586 1017 ntTSL 2 BASIC2.76□□□□□ -1.97
COL4A4P53420 AC109464.2-201ENST00000510242 943 ntBASIC2.76□□□□□ -1.97
COL4A4P53420 HMGB1P47-201ENST00000511281 589 ntBASIC2.76□□□□□ -1.97
COL4A4P53420 MTRNR2L5-201ENST00000512524 739 ntAPPRIS P1 BASIC2.76□□□□□ -1.97
COL4A4P53420 AC133963.2-201ENST00000513686 578 ntBASIC2.76□□□□□ -1.97
COL4A4P53420 MTND2P26-201ENST00000528255 1029 ntBASIC2.76□□□□□ -1.97
COL4A4P53420 AC109635.3-201ENST00000529536 185 ntBASIC2.76□□□□□ -1.97
COL4A4P53420 ERP27-202ENST00000540097 993 ntTSL 2 BASIC2.76□□□□□ -1.97
COL4A4P53420 AC087897.2-201ENST00000552639 678 ntTSL 1 (best) BASIC2.76□□□□□ -1.97
COL4A4P53420 AL135746.1-201ENST00000554205 547 ntTSL 3 BASIC2.76□□□□□ -1.97
COL4A4P53420 AC104229.1-201ENST00000561364 255 ntBASIC2.76□□□□□ -1.97
COL4A4P53420 AC006362.1-201ENST00000567392 174 ntBASIC2.76□□□□□ -1.97
COL4A4P53420 AC091135.1-201ENST00000585943 307 ntBASIC2.76□□□□□ -1.97
COL4A4P53420 LINC01533-205ENST00000593056 607 ntTSL 3 BASIC2.76□□□□□ -1.97
COL4A4P53420 AC099566.1-211ENST00000595188 737 ntTSL 5 BASIC2.76□□□□□ -1.97
COL4A4P53420 AC073648.5-201ENST00000603502 305 ntBASIC2.76□□□□□ -1.97
COL4A4P53420 AC107294.3-201ENST00000609211 526 ntBASIC2.76□□□□□ -1.97
COL4A4P53420 AC099566.1-205ENST00000609411 657 ntTSL 5 BASIC2.76□□□□□ -1.97
COL4A4P53420 AC096586.2-201ENST00000610260 441 ntBASIC2.76□□□□□ -1.97
Retrieved 100 of 98,524 protein–RNA pairs in 86.7 ms