Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 AL160272.1-201ENST00000421509 521 ntTSL 3 BASIC3.92□□□□□ -1.78
HOXC9P31274 AL035407.1-201ENST00000429211 571 ntBASIC3.92□□□□□ -1.78
HOXC9P31274 ZYG11AP1-201ENST00000430329 837 ntBASIC3.92□□□□□ -1.78
HOXC9P31274 CKS1BP5-201ENST00000434172 273 ntBASIC3.92□□□□□ -1.78
HOXC9P31274 AC004485.1-201ENST00000439839 527 ntTSL 5 BASIC3.92□□□□□ -1.78
HOXC9P31274 AC007099.2-201ENST00000444852 336 ntTSL 5 BASIC3.92□□□□□ -1.78
HOXC9P31274 Z83846.1-201ENST00000446798 265 ntBASIC3.92□□□□□ -1.78
HOXC9P31274 SNORD108-201ENST00000459332 71 ntBASIC3.92□□□□□ -1.78
HOXC9P31274 MTND3P7-201ENST00000474435 343 ntBASIC3.92□□□□□ -1.78
HOXC9P31274 FAM172BP-201ENST00000487497 1089 ntBASIC3.92□□□□□ -1.78
HOXC9P31274 CSN1S1-204ENST00000507772 895 ntAPPRIS ALT2 TSL 5 BASIC3.92□□□□□ -1.78
HOXC9P31274 MTCO3P44-201ENST00000510977 541 ntBASIC3.92□□□□□ -1.78
HOXC9P31274 RNU4ATAC10P-201ENST00000516967 122 ntBASIC3.92□□□□□ -1.78
HOXC9P31274 TRIQK-209ENST00000519969 555 ntAPPRIS P1 TSL 4 BASIC3.92□□□□□ -1.78
HOXC9P31274 OR8L1P-201ENST00000534005 955 ntBASIC3.92□□□□□ -1.78
HOXC9P31274 KLRF1-203ENST00000537723 598 ntTSL 1 (best) BASIC3.92□□□□□ -1.78
HOXC9P31274 MAPK1-204ENST00000544786 951 ntTSL 1 (best) BASIC3.92□□□□□ -1.78
HOXC9P31274 OR7K1P-201ENST00000546439 926 ntBASIC3.92□□□□□ -1.78
HOXC9P31274 HMGB1P6-201ENST00000569046 646 ntBASIC3.92□□□□□ -1.78
HOXC9P31274 AC012146.1-204ENST00000570712 426 ntTSL 3 BASIC3.92□□□□□ -1.78
HOXC9P31274 FOPNL-205ENST00000573429 646 ntTSL 3 BASIC3.92□□□□□ -1.78
HOXC9P31274 AC138761.3-201ENST00000579993 334 ntBASIC3.92□□□□□ -1.78
HOXC9P31274 AC091691.2-201ENST00000581940 567 ntTSL 4 BASIC3.92□□□□□ -1.78
HOXC9P31274 LLPHP1-201ENST00000603571 367 ntBASIC3.92□□□□□ -1.78
HOXC9P31274 DUXAP11-201ENST00000603858 526 ntBASIC3.92□□□□□ -1.78
HOXC9P31274 AL365503.1-201ENST00000605247 905 ntBASIC3.92□□□□□ -1.78
HOXC9P31274 ACYP2-208ENST00000606865 674 ntTSL 5 BASIC3.92□□□□□ -1.78
HOXC9P31274 AL713922.2-201ENST00000619384 716 ntBASIC3.92□□□□□ -1.78
HOXC9P31274 TRAPPC13-208ENST00000505553 1410 ntAPPRIS ALT1 TSL 1 (best) BASIC3.92□□□□□ -1.78
HOXC9P31274 AC011477.1-204ENST00000623416 1325 ntBASIC3.92□□□□□ -1.78
HOXC9P31274 FAM69A-202ENST00000613047 2646 ntTSL 4 BASIC3.91□□□□□ -1.78
HOXC9P31274 C1D-201ENST00000355848 2233 ntAPPRIS P1 TSL 1 (best) BASIC3.91□□□□□ -1.78
HOXC9P31274 C5orf42-205ENST00000508244 11062 ntAPPRIS P2 TSL 5 BASIC3.91□□□□□ -1.78
HOXC9P31274 ZNF734P-201ENST00000419494 1534 ntBASIC3.91□□□□□ -1.78
HOXC9P31274 CPB2-202ENST00000439329 1655 ntTSL 5 BASIC3.91□□□□□ -1.78
HOXC9P31274 PRKD3-202ENST00000379066 6111 ntAPPRIS P1 TSL 5 BASIC3.91□□□□□ -1.78
HOXC9P31274 HMGB1-204ENST00000399489 1727 ntTSL 1 (best) BASIC3.91□□□□□ -1.78
HOXC9P31274 RNA5SP184-201ENST00000411071 108 ntBASIC3.91□□□□□ -1.78
HOXC9P31274 RPS15AP38-201ENST00000413110 372 ntBASIC3.91□□□□□ -1.78
HOXC9P31274 AL592148.1-201ENST00000413568 445 ntBASIC3.91□□□□□ -1.78
HOXC9P31274 AL049610.1-201ENST00000423374 372 ntBASIC3.91□□□□□ -1.78
HOXC9P31274 BBS9-205ENST00000425508 1252 ntTSL 1 (best) BASIC3.91□□□□□ -1.78
HOXC9P31274 DUTP6-201ENST00000425573 462 ntBASIC3.91□□□□□ -1.78
HOXC9P31274 AL117351.1-201ENST00000438864 766 ntBASIC3.91□□□□□ -1.78
HOXC9P31274 AC069540.2-201ENST00000441776 351 ntTSL 3 BASIC3.91□□□□□ -1.78
HOXC9P31274 AL359893.1-201ENST00000447628 1580 ntBASIC3.91□□□□□ -1.78
HOXC9P31274 AL109933.2-201ENST00000452651 260 ntBASIC3.91□□□□□ -1.78
HOXC9P31274 USP9YP10-201ENST00000454868 628 ntBASIC3.91□□□□□ -1.78
HOXC9P31274 AC133473.1-201ENST00000455173 299 ntBASIC3.91□□□□□ -1.78
HOXC9P31274 ANKRD62P1-PARP4P3-201ENST00000456726 1181 ntTSL 5 BASIC3.91□□□□□ -1.78
HOXC9P31274 RNU7-136P-201ENST00000458819 69 ntBASIC3.91□□□□□ -1.78
HOXC9P31274 LINC02077-201ENST00000465795 409 ntTSL 3 BASIC3.91□□□□□ -1.78
HOXC9P31274 NCOR1P1-201ENST00000478176 406 ntTSL 1 (best) BASIC3.91□□□□□ -1.78
HOXC9P31274 RPL5P23-201ENST00000496040 868 ntBASIC3.91□□□□□ -1.78
HOXC9P31274 MTND1P22-201ENST00000510572 951 ntBASIC3.91□□□□□ -1.78
HOXC9P31274 USP9YP5-201ENST00000511770 630 ntBASIC3.91□□□□□ -1.78
HOXC9P31274 RNA5SP217-201ENST00000515959 91 ntBASIC3.91□□□□□ -1.78
HOXC9P31274 AC104316.1-201ENST00000521258 625 ntTSL 3 BASIC3.91□□□□□ -1.78
HOXC9P31274 AC007954.1-201ENST00000554198 494 ntBASIC3.91□□□□□ -1.78
HOXC9P31274 CENPUP2-201ENST00000555897 1186 ntBASIC3.91□□□□□ -1.78
HOXC9P31274 AL157938.2-201ENST00000587264 894 ntTSL 5 BASIC3.91□□□□□ -1.78
HOXC9P31274 AC024153.1-201ENST00000603103 365 ntBASIC3.91□□□□□ -1.78
HOXC9P31274 AC024560.3-201ENST00000608482 349 ntBASIC3.91□□□□□ -1.78
HOXC9P31274 AC243585.2-201ENST00000619099 508 ntTSL 3 BASIC3.91□□□□□ -1.78
HOXC9P31274 CLECL1-204ENST00000621400 611 ntAPPRIS ALT2 TSL 5 BASIC3.91□□□□□ -1.78
HOXC9P31274 AL356596.1-201ENST00000624230 379 ntBASIC3.91□□□□□ -1.78
HOXC9P31274 AC092192.1-201ENST00000633154 1018 ntBASIC3.91□□□□□ -1.78
HOXC9P31274 OR6C2-202ENST00000641202 2105 ntAPPRIS P1 BASIC3.91□□□□□ -1.78
HOXC9P31274 ZNF107-203ENST00000395391 6094 ntTSL 1 (best) BASIC3.91□□□□□ -1.78
HOXC9P31274 C6orf10-209ENST00000612031 2179 ntAPPRIS ALT2 TSL 5 BASIC3.9□□□□□ -1.78
HOXC9P31274 OR4G11P-202ENST00000642116 1414 ntBASIC3.9□□□□□ -1.78
HOXC9P31274 NTS-201ENST00000256010 1237 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.79
HOXC9P31274 RNU1-75P-201ENST00000347264 129 ntBASIC3.9□□□□□ -1.79
HOXC9P31274 MT-ATP6-201ENST00000361899 681 ntAPPRIS P1 BASIC3.9□□□□□ -1.79
HOXC9P31274 RNU6-660P-201ENST00000364566 109 ntBASIC3.9□□□□□ -1.79
HOXC9P31274 Y_RNA.302-201ENST00000364997 102 ntBASIC3.9□□□□□ -1.79
HOXC9P31274 RNA5SP88-201ENST00000365560 109 ntBASIC3.9□□□□□ -1.79
HOXC9P31274 Y_RNA.493-201ENST00000384422 102 ntBASIC3.9□□□□□ -1.79
HOXC9P31274 MT-TC-201ENST00000387405 66 ntBASIC3.9□□□□□ -1.79
HOXC9P31274 HIGD1C-201ENST00000398455 371 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.79
HOXC9P31274 RPL23AP48-201ENST00000406913 488 ntBASIC3.9□□□□□ -1.79
HOXC9P31274 MIR1302-8-201ENST00000408342 128 ntBASIC3.9□□□□□ -1.79
HOXC9P31274 AL078590.1-201ENST00000412602 479 ntTSL 3 BASIC3.9□□□□□ -1.79
HOXC9P31274 AC092832.1-201ENST00000422934 400 ntBASIC3.9□□□□□ -1.79
HOXC9P31274 UTS2B-203ENST00000427544 676 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.79
HOXC9P31274 AL590103.1-201ENST00000434488 307 ntBASIC3.9□□□□□ -1.79
HOXC9P31274 RPL23AP74-201ENST00000437246 471 ntBASIC3.9□□□□□ -1.79
HOXC9P31274 MTCYBP39-201ENST00000437562 491 ntBASIC3.9□□□□□ -1.79
HOXC9P31274 FAR2P1-203ENST00000440931 187 ntTSL 2 BASIC3.9□□□□□ -1.79
HOXC9P31274 AL451164.2-201ENST00000445932 597 ntTSL 2 BASIC3.9□□□□□ -1.79
HOXC9P31274 AL357793.2-201ENST00000447056 850 ntTSL 3 BASIC3.9□□□□□ -1.79
HOXC9P31274 AC005297.2-201ENST00000450430 606 ntBASIC3.9□□□□□ -1.79
HOXC9P31274 AC073486.1-201ENST00000453278 531 ntTSL 5 BASIC3.9□□□□□ -1.79
HOXC9P31274 RN7SL432P-201ENST00000484057 298 ntBASIC3.9□□□□□ -1.79
HOXC9P31274 AC114967.1-201ENST00000504890 259 ntBASIC3.9□□□□□ -1.79
HOXC9P31274 MFAP3L-206ENST00000506110 548 ntTSL 3 BASIC3.9□□□□□ -1.79
HOXC9P31274 AC105389.2-201ENST00000506475 435 ntTSL 3 BASIC3.9□□□□□ -1.79
HOXC9P31274 AC107398.2-201ENST00000508081 601 ntTSL 5 BASIC3.9□□□□□ -1.79
HOXC9P31274 ZNF131-215ENST00000509931 970 ntTSL 2 BASIC3.9□□□□□ -1.79
HOXC9P31274 IGHVII-62-1-201ENST00000519283 235 ntBASIC3.9□□□□□ -1.79
Retrieved 100 of 98,524 protein–RNA pairs in 118.3 ms