Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 SCN2A-207ENST00000631182 8430 ntAPPRIS ALT1 TSL 5 BASIC5.03□□□□□ -1.6
COL8A1P27658 OR2T7-202ENST00000641557 3409 ntAPPRIS P1 BASIC5.03□□□□□ -1.6
COL8A1P27658 THAP6-201ENST00000311638 3549 ntAPPRIS P3 TSL 1 (best) BASIC5.03□□□□□ -1.6
COL8A1P27658 BANK1-206ENST00000504592 3544 ntTSL 2 BASIC5.03□□□□□ -1.6
COL8A1P27658 AC005225.5-201ENST00000623547 2225 ntBASIC5.03□□□□□ -1.6
COL8A1P27658 LINC02225-201ENST00000510444 4069 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
COL8A1P27658 FLRT3-202ENST00000378053 4776 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
COL8A1P27658 RNU6-834P-201ENST00000362367 110 ntBASIC5.03□□□□□ -1.6
COL8A1P27658 RNA5SP131-201ENST00000365452 119 ntBASIC5.03□□□□□ -1.6
COL8A1P27658 RNU6-937P-201ENST00000384325 106 ntBASIC5.03□□□□□ -1.6
COL8A1P27658 RNU6-225P-201ENST00000384613 103 ntBASIC5.03□□□□□ -1.6
COL8A1P27658 AC013442.1-201ENST00000397347 228 ntBASIC5.03□□□□□ -1.6
COL8A1P27658 RNU6-651P-201ENST00000411040 105 ntBASIC5.03□□□□□ -1.6
COL8A1P27658 AL358176.3-201ENST00000420757 454 ntBASIC5.03□□□□□ -1.6
COL8A1P27658 AC234779.1-201ENST00000425910 285 ntBASIC5.03□□□□□ -1.6
COL8A1P27658 H3F3BP1-201ENST00000440551 403 ntBASIC5.03□□□□□ -1.6
COL8A1P27658 AL160271.1-201ENST00000444708 829 ntTSL 3 BASIC5.03□□□□□ -1.6
COL8A1P27658 C10orf128-207ENST00000474718 614 ntAPPRIS P3 TSL 1 (best) BASIC5.03□□□□□ -1.6
COL8A1P27658 BX284632.1-201ENST00000478218 541 ntBASIC5.03□□□□□ -1.6
COL8A1P27658 AC093840.1-201ENST00000511599 336 ntBASIC5.03□□□□□ -1.6
COL8A1P27658 RNU4-57P-201ENST00000515980 135 ntBASIC5.03□□□□□ -1.6
COL8A1P27658 RNA5SP400-201ENST00000517155 111 ntBASIC5.03□□□□□ -1.6
COL8A1P27658 AC021678.3-201ENST00000517893 476 ntBASIC5.03□□□□□ -1.6
COL8A1P27658 MDM2-232ENST00000544561 213 ntTSL 5 BASIC5.03□□□□□ -1.6
COL8A1P27658 AC120057.2-201ENST00000571520 271 ntBASIC5.03□□□□□ -1.6
COL8A1P27658 MIR3934-201ENST00000579806 107 ntBASIC5.03□□□□□ -1.6
COL8A1P27658 AC006116.3-201ENST00000592968 361 ntBASIC5.03□□□□□ -1.6
COL8A1P27658 Z98949.1-204ENST00000595102 731 ntTSL 5 BASIC5.03□□□□□ -1.6
COL8A1P27658 AL670379.2-201ENST00000604983 252 ntBASIC5.03□□□□□ -1.6
COL8A1P27658 AC037487.3-201ENST00000606668 112 ntBASIC5.03□□□□□ -1.6
COL8A1P27658 Metazoa_SRP.134-201ENST00000610965 327 ntBASIC5.03□□□□□ -1.6
COL8A1P27658 AL139099.4-201ENST00000614802 114 ntBASIC5.03□□□□□ -1.6
COL8A1P27658 SNHG22-203ENST00000617833 660 ntBASIC5.03□□□□□ -1.6
COL8A1P27658 KCNQ1OT1_5.1-201ENST00000621902 226 ntBASIC5.03□□□□□ -1.6
COL8A1P27658 AP002799.1-201ENST00000623552 423 ntBASIC5.03□□□□□ -1.6
COL8A1P27658 Z99571.1-201ENST00000636677 394 ntBASIC5.03□□□□□ -1.6
COL8A1P27658 SDAD1-203ENST00000395711 2513 ntTSL 2 BASIC5.03□□□□□ -1.6
COL8A1P27658 MAP3K19-204ENST00000392915 5030 ntAPPRIS P3 TSL 5 BASIC5.03□□□□□ -1.6
COL8A1P27658 PRG4-204ENST00000445192 5044 ntAPPRIS P3 TSL 5 BASIC5.03□□□□□ -1.6
COL8A1P27658 RBM48-202ENST00000481551 4093 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
COL8A1P27658 HMGN5-201ENST00000358130 2126 ntAPPRIS P2 TSL 2 BASIC5.03□□□□□ -1.6
COL8A1P27658 STAU2-220ENST00000522695 2646 ntAPPRIS ALT1 TSL 1 (best) BASIC5.03□□□□□ -1.6
COL8A1P27658 INO80D-201ENST00000403263 14136 ntAPPRIS P1 TSL 5 BASIC5.03□□□□□ -1.6
COL8A1P27658 HTR1F-201ENST00000319595 3140 ntAPPRIS P1 BASIC5.03□□□□□ -1.6
COL8A1P27658 BIN2P1-201ENST00000504996 1530 ntBASIC5.02□□□□□ -1.61
COL8A1P27658 KCNH5-201ENST00000322893 11290 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
COL8A1P27658 DST-220ENST00000518935 3547 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
COL8A1P27658 AC005480.1-202ENST00000555916 3548 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
COL8A1P27658 ELAVL2-202ENST00000380110 3691 ntTSL 5 BASIC5.02□□□□□ -1.61
COL8A1P27658 TCF7L2-219ENST00000542695 4136 ntTSL 5 BASIC5.02□□□□□ -1.61
COL8A1P27658 AC011504.1-201ENST00000623331 4103 ntBASIC5.02□□□□□ -1.61
COL8A1P27658 STYX-202ENST00000442123 4554 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
COL8A1P27658 CUZD1-205ENST00000368904 2903 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
COL8A1P27658 G3BP1-202ENST00000394123 10240 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
COL8A1P27658 KLHL4-201ENST00000373114 2445 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
COL8A1P27658 WDPCP-202ENST00000398544 2063 ntAPPRIS ALT2 TSL 1 (best) BASIC5.02□□□□□ -1.61
COL8A1P27658 AL353751.1-201ENST00000354541 495 ntTSL 3 BASIC5.02□□□□□ -1.61
COL8A1P27658 Y_RNA.275-201ENST00000364726 110 ntBASIC5.02□□□□□ -1.61
COL8A1P27658 RNU6ATAC21P-201ENST00000408656 126 ntBASIC5.02□□□□□ -1.61
COL8A1P27658 RNA5SP494-201ENST00000410653 129 ntBASIC5.02□□□□□ -1.61
COL8A1P27658 RPS15AP6-201ENST00000420703 385 ntBASIC5.02□□□□□ -1.61
COL8A1P27658 AC093151.3-203ENST00000422305 514 ntTSL 3 BASIC5.02□□□□□ -1.61
COL8A1P27658 INTS6-AS1-201ENST00000434512 466 ntTSL 3 BASIC5.02□□□□□ -1.61
COL8A1P27658 LINC00280-201ENST00000439525 448 ntTSL 2 BASIC5.02□□□□□ -1.61
COL8A1P27658 Y_RNA.689-201ENST00000516589 107 ntBASIC5.02□□□□□ -1.61
COL8A1P27658 SNHG1-211ENST00000539921 1071 ntTSL 2 BASIC5.02□□□□□ -1.61
COL8A1P27658 BNIP3P1-201ENST00000547295 580 ntBASIC5.02□□□□□ -1.61
COL8A1P27658 TRAV32-201ENST00000553993 340 ntBASIC5.02□□□□□ -1.61
COL8A1P27658 MEG8-215ENST00000555354 469 ntTSL 3 BASIC5.02□□□□□ -1.61
COL8A1P27658 MIR4308-201ENST00000580634 81 ntBASIC5.02□□□□□ -1.61
COL8A1P27658 ARL2BPP3-202ENST00000580773 420 ntTSL 5 BASIC5.02□□□□□ -1.61
COL8A1P27658 MIR4260-201ENST00000583107 67 ntBASIC5.02□□□□□ -1.61
COL8A1P27658 AC006077.1-201ENST00000604746 343 ntBASIC5.02□□□□□ -1.61
COL8A1P27658 AC087783.2-201ENST00000605070 562 ntBASIC5.02□□□□□ -1.61
COL8A1P27658 CBX5-201ENST00000209875 11528 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
COL8A1P27658 USP45-204ENST00000369233 2514 ntTSL 5 BASIC5.02□□□□□ -1.61
COL8A1P27658 AC083837.1-201ENST00000565297 2994 ntBASIC5.02□□□□□ -1.61
COL8A1P27658 DOCK10-202ENST00000409592 7288 ntAPPRIS ALT2 TSL 1 (best) BASIC5.02□□□□□ -1.61
COL8A1P27658 SLC15A5-201ENST00000344941 2923 ntAPPRIS P1 TSL 5 BASIC5.02□□□□□ -1.61
COL8A1P27658 AC005674.2-201ENST00000561486 3510 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
COL8A1P27658 HEPHL1-201ENST00000315765 5345 ntAPPRIS P1 TSL 5 BASIC5.02□□□□□ -1.61
COL8A1P27658 AC020656.2-201ENST00000613291 5309 ntBASIC5.02□□□□□ -1.61
COL8A1P27658 ISPD-AS1-202ENST00000438573 2252 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
COL8A1P27658 SMIM21-203ENST00000584508 2554 ntAPPRIS ALT2 TSL 1 (best) BASIC5.02□□□□□ -1.61
COL8A1P27658 OR6C4-202ENST00000641569 5141 ntAPPRIS P1 BASIC5.02□□□□□ -1.61
COL8A1P27658 ZNF638-201ENST00000264447 6505 ntAPPRIS P1 TSL 1 (best) BASIC5.01□□□□□ -1.61
COL8A1P27658 UGT2B15-201ENST00000338206 2077 ntAPPRIS P1 TSL 1 (best) BASIC5.01□□□□□ -1.61
COL8A1P27658 IPO8-209ENST00000544829 3212 ntTSL 2 BASIC5.01□□□□□ -1.61
COL8A1P27658 ZC3H12C-201ENST00000278590 8807 ntTSL 2 BASIC5.01□□□□□ -1.61
COL8A1P27658 FASTKD2-201ENST00000236980 3188 ntAPPRIS P1 TSL 1 (best) BASIC5.01□□□□□ -1.61
COL8A1P27658 PDZRN4-201ENST00000298919 3411 ntTSL 2 BASIC5.01□□□□□ -1.61
COL8A1P27658 HDAC9-203ENST00000406072 4102 ntTSL 5 BASIC5.01□□□□□ -1.61
COL8A1P27658 ZNF208-201ENST00000397126 3992 ntAPPRIS P1 TSL 3 BASIC5.01□□□□□ -1.61
COL8A1P27658 AL159987.1-201ENST00000347911 293 ntBASIC5.01□□□□□ -1.61
COL8A1P27658 U3.2-201ENST00000362981 210 ntBASIC5.01□□□□□ -1.61
COL8A1P27658 SNORD116-14-201ENST00000383894 92 ntBASIC5.01□□□□□ -1.61
COL8A1P27658 SNORD116-17-201ENST00000383929 92 ntBASIC5.01□□□□□ -1.61
COL8A1P27658 SNORD116-15-201ENST00000384445 92 ntBASIC5.01□□□□□ -1.61
COL8A1P27658 SNORD116-20-201ENST00000384529 92 ntBASIC5.01□□□□□ -1.61
COL8A1P27658 SNORD116-19-201ENST00000384729 92 ntBASIC5.01□□□□□ -1.61
Retrieved 100 of 98,524 protein–RNA pairs in 138 ms