Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 MIR6863-201ENST00000636112 90 ntBASIC4.35□□□□□ -1.71
COL3A1P02461 USP33-201ENST00000357428 4155 ntTSL 5 BASIC4.35□□□□□ -1.71
COL3A1P02461 AC107029.2-201ENST00000462011 2305 ntTSL 2 BASIC4.35□□□□□ -1.71
COL3A1P02461 LINC01091-203ENST00000514823 5262 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
COL3A1P02461 AC109315.1-201ENST00000584143 1347 ntBASIC4.34□□□□□ -1.71
COL3A1P02461 CPNE8-202ENST00000360449 1757 ntAPPRIS ALT2 TSL 2 BASIC4.34□□□□□ -1.71
COL3A1P02461 STARD6-201ENST00000307844 663 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.71
COL3A1P02461 AC073325.2-201ENST00000339545 159 ntBASIC4.34□□□□□ -1.71
COL3A1P02461 Y_RNA.296-201ENST00000364930 108 ntBASIC4.34□□□□□ -1.71
COL3A1P02461 AL158212.2-201ENST00000369391 460 ntTSL 3 BASIC4.34□□□□□ -1.71
COL3A1P02461 Z98941.1-201ENST00000407764 100 ntBASIC4.34□□□□□ -1.71
COL3A1P02461 UBE2Q2P5Y-201ENST00000413867 207 ntBASIC4.34□□□□□ -1.71
COL3A1P02461 AIMP1P1-201ENST00000418670 937 ntBASIC4.34□□□□□ -1.71
COL3A1P02461 SDCBPP3-201ENST00000419629 891 ntBASIC4.34□□□□□ -1.71
COL3A1P02461 LINC00189-202ENST00000431661 308 ntTSL 5 BASIC4.34□□□□□ -1.71
COL3A1P02461 UBE2Q2P4Y-201ENST00000433767 207 ntBASIC4.34□□□□□ -1.71
COL3A1P02461 AC104850.1-201ENST00000435940 476 ntBASIC4.34□□□□□ -1.71
COL3A1P02461 AC007677.1-201ENST00000445757 515 ntBASIC4.34□□□□□ -1.71
COL3A1P02461 AC020893.1-201ENST00000502452 580 ntBASIC4.34□□□□□ -1.71
COL3A1P02461 AC079340.1-201ENST00000504799 552 ntTSL 4 BASIC4.34□□□□□ -1.71
COL3A1P02461 RNU1-143P-201ENST00000516296 146 ntBASIC4.34□□□□□ -1.71
COL3A1P02461 SMIM18-201ENST00000517349 905 ntAPPRIS P1 TSL 2 BASIC4.34□□□□□ -1.71
COL3A1P02461 AC103726.1-201ENST00000520785 474 ntTSL 2 BASIC4.34□□□□□ -1.71
COL3A1P02461 AC073912.2-201ENST00000542821 317 ntTSL 3 BASIC4.34□□□□□ -1.71
COL3A1P02461 AC009320.1-201ENST00000549070 349 ntTSL 3 BASIC4.34□□□□□ -1.71
COL3A1P02461 AL157955.1-201ENST00000554433 331 ntTSL 3 BASIC4.34□□□□□ -1.71
COL3A1P02461 LINC01894-201ENST00000580984 487 ntTSL 2 BASIC4.34□□□□□ -1.71
COL3A1P02461 AC105094.2-203ENST00000590357 555 ntTSL 4 BASIC4.34□□□□□ -1.71
COL3A1P02461 AC103710.1-201ENST00000610003 901 ntBASIC4.34□□□□□ -1.71
COL3A1P02461 U1.23-201ENST00000610293 146 ntBASIC4.34□□□□□ -1.71
COL3A1P02461 RNU1-68P-201ENST00000615382 146 ntBASIC4.34□□□□□ -1.71
COL3A1P02461 STMN1P1-201ENST00000617809 440 ntBASIC4.34□□□□□ -1.71
COL3A1P02461 U1.39-201ENST00000621562 146 ntBASIC4.34□□□□□ -1.71
COL3A1P02461 ALG13-230ENST00000623189 458 ntTSL 3 BASIC4.34□□□□□ -1.71
COL3A1P02461 AC110801.1-201ENST00000623590 212 ntBASIC4.34□□□□□ -1.71
COL3A1P02461 FIGNL1-212ENST00000613602 3187 ntAPPRIS P1 TSL 5 BASIC4.34□□□□□ -1.71
COL3A1P02461 RGPD4-201ENST00000408999 5464 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.71
COL3A1P02461 LINC00616-205ENST00000514600 2017 ntTSL 1 (best) BASIC4.34□□□□□ -1.72
COL3A1P02461 HSPA8P1-201ENST00000425843 1833 ntBASIC4.34□□□□□ -1.72
COL3A1P02461 ATP2C1-202ENST00000359644 3401 ntAPPRIS P3 TSL 1 (best) BASIC4.33□□□□□ -1.72
COL3A1P02461 NKTR-219ENST00000617821 7319 ntTSL 5 BASIC4.33□□□□□ -1.72
COL3A1P02461 HMGB1P5-201ENST00000255320 642 ntBASIC4.33□□□□□ -1.72
COL3A1P02461 OR13C4-201ENST00000277216 957 ntAPPRIS P1 BASIC4.33□□□□□ -1.72
COL3A1P02461 OR14A16-201ENST00000357627 930 ntAPPRIS P1 BASIC4.33□□□□□ -1.72
COL3A1P02461 Y_RNA.160-201ENST00000363677 92 ntBASIC4.33□□□□□ -1.72
COL3A1P02461 SNORA7.4-201ENST00000384249 137 ntBASIC4.33□□□□□ -1.72
COL3A1P02461 SNORA48.2-201ENST00000390926 124 ntBASIC4.33□□□□□ -1.72
COL3A1P02461 MTCO3P40-201ENST00000392516 676 ntBASIC4.33□□□□□ -1.72
COL3A1P02461 RHEBP3-201ENST00000411920 351 ntBASIC4.33□□□□□ -1.72
COL3A1P02461 USP9YP13-201ENST00000417797 480 ntBASIC4.33□□□□□ -1.72
COL3A1P02461 ZFY-AS1-202ENST00000431145 419 ntTSL 3 BASIC4.33□□□□□ -1.72
COL3A1P02461 LINC01935-201ENST00000431897 437 ntTSL 3 BASIC4.33□□□□□ -1.72
COL3A1P02461 NDUFA5P4-201ENST00000436704 385 ntBASIC4.33□□□□□ -1.72
COL3A1P02461 AC068580.2-201ENST00000449749 338 ntTSL 5 BASIC4.33□□□□□ -1.72
COL3A1P02461 snoU109.1-201ENST00000459339 135 ntBASIC4.33□□□□□ -1.72
COL3A1P02461 RN7SL807P-201ENST00000470923 297 ntBASIC4.33□□□□□ -1.72
COL3A1P02461 BCL2L15-204ENST00000471267 267 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
COL3A1P02461 RNF138P1-201ENST00000502765 546 ntBASIC4.33□□□□□ -1.72
COL3A1P02461 AC093523.1-201ENST00000503268 499 ntTSL 3 BASIC4.33□□□□□ -1.72
COL3A1P02461 MTCO3P9-201ENST00000506989 781 ntBASIC4.33□□□□□ -1.72
COL3A1P02461 AC011396.1-201ENST00000507391 312 ntTSL 3 BASIC4.33□□□□□ -1.72
COL3A1P02461 AC114786.4-201ENST00000508771 728 ntBASIC4.33□□□□□ -1.72
COL3A1P02461 HTN1-204ENST00000511674 623 ntAPPRIS P1 TSL 2 BASIC4.33□□□□□ -1.72
COL3A1P02461 OR4C2P-201ENST00000530855 1064 ntBASIC4.33□□□□□ -1.72
COL3A1P02461 LINC02384-205ENST00000539404 785 ntTSL 3 BASIC4.33□□□□□ -1.72
COL3A1P02461 OR6C73P-201ENST00000546432 358 ntBASIC4.33□□□□□ -1.72
COL3A1P02461 AC011602.1-201ENST00000546484 331 ntBASIC4.33□□□□□ -1.72
COL3A1P02461 AC125611.2-201ENST00000551907 647 ntBASIC4.33□□□□□ -1.72
COL3A1P02461 AC093484.5-201ENST00000585048 304 ntTSL 3 BASIC4.33□□□□□ -1.72
COL3A1P02461 AP001972.3-202ENST00000603012 375 ntTSL 3 BASIC4.33□□□□□ -1.72
COL3A1P02461 AL162730.1-201ENST00000605734 292 ntBASIC4.33□□□□□ -1.72
COL3A1P02461 AL590282.1-201ENST00000610379 1136 ntBASIC4.33□□□□□ -1.72
COL3A1P02461 Y_RNA.812-201ENST00000610788 101 ntBASIC4.33□□□□□ -1.72
COL3A1P02461 AL020991.1-201ENST00000612314 373 ntBASIC4.33□□□□□ -1.72
COL3A1P02461 AL356130.2-201ENST00000612554 404 ntTSL 3 BASIC4.33□□□□□ -1.72
COL3A1P02461 uc_338.25-201ENST00000613756 156 ntBASIC4.33□□□□□ -1.72
COL3A1P02461 Y_RNA.784-201ENST00000613803 101 ntBASIC4.33□□□□□ -1.72
COL3A1P02461 Y_RNA.787-201ENST00000616522 101 ntBASIC4.33□□□□□ -1.72
COL3A1P02461 Y_RNA.780-201ENST00000617336 101 ntBASIC4.33□□□□□ -1.72
COL3A1P02461 Y_RNA.801-201ENST00000619005 101 ntBASIC4.33□□□□□ -1.72
COL3A1P02461 AC006840.1-201ENST00000623069 542 ntBASIC4.33□□□□□ -1.72
COL3A1P02461 RPL23AP61-201ENST00000623642 466 ntBASIC4.33□□□□□ -1.72
COL3A1P02461 OR5T1-201ENST00000641368 1118 ntAPPRIS P1 BASIC4.33□□□□□ -1.72
COL3A1P02461 TBC1D31-214ENST00000522420 3167 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
COL3A1P02461 MTCO1P6-201ENST00000481192 1384 ntBASIC4.33□□□□□ -1.72
COL3A1P02461 C6orf10-209ENST00000612031 2179 ntAPPRIS ALT2 TSL 5 BASIC4.33□□□□□ -1.72
COL3A1P02461 HEATR5B-201ENST00000233099 6905 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
COL3A1P02461 C2orf16-202ENST00000447166 16401 ntAPPRIS ALT2 TSL 3 BASIC4.33□□□□□ -1.72
COL3A1P02461 PCLO-206ENST00000437081 3786 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
COL3A1P02461 ORC3-202ENST00000392844 2512 ntAPPRIS ALT1 TSL 1 (best) BASIC4.33□□□□□ -1.72
COL3A1P02461 RNF111-206ENST00000559209 5278 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
COL3A1P02461 AC118273.1-201ENST00000525324 3006 ntBASIC4.32□□□□□ -1.72
COL3A1P02461 OBSCN-214ENST00000636875 23907 ntTSL 5 BASIC4.32□□□□□ -1.72
COL3A1P02461 KCNE2-201ENST00000290310 1051 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
COL3A1P02461 RPL21P132-201ENST00000331267 462 ntBASIC4.32□□□□□ -1.72
COL3A1P02461 ZBTB8OSP1-201ENST00000342688 498 ntBASIC4.32□□□□□ -1.72
COL3A1P02461 RNU4-73P-201ENST00000363164 141 ntBASIC4.32□□□□□ -1.72
COL3A1P02461 Y_RNA.295-201ENST00000364918 102 ntBASIC4.32□□□□□ -1.72
COL3A1P02461 RNA5SP88-201ENST00000365560 109 ntBASIC4.32□□□□□ -1.72
COL3A1P02461 SPRR2E-201ENST00000368750 678 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 118.8 ms