Protein–RNA interactions for Protein: O95639

CPSF4, Cleavage and polyadenylation specificity factor subunit 4, humanhuman

Known RBP Predictions only

Length 269 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4O95639 MIR4666A-201ENST00000580160 79 ntBASIC2.16□□□□□ -2.06
CPSF4O95639 AC016493.1-201ENST00000586106 688 ntTSL 1 (best) BASIC2.16□□□□□ -2.06
CPSF4O95639 AP001542.2-201ENST00000593141 364 ntBASIC2.16□□□□□ -2.06
CPSF4O95639 XIAPP1-201ENST00000603162 600 ntBASIC2.16□□□□□ -2.06
CPSF4O95639 AC006023.1-201ENST00000603944 259 ntBASIC2.16□□□□□ -2.06
CPSF4O95639 DPRXP5-201ENST00000604662 539 ntBASIC2.16□□□□□ -2.06
CPSF4O95639 BNIP3P19-201ENST00000605397 577 ntBASIC2.16□□□□□ -2.06
CPSF4O95639 AL160408.5-201ENST00000607759 526 ntTSL 4 BASIC2.16□□□□□ -2.06
CPSF4O95639 AC023490.3-201ENST00000621762 358 ntTSL 3 BASIC2.16□□□□□ -2.06
CPSF4O95639 MIR6766-201ENST00000622641 72 ntBASIC2.16□□□□□ -2.06
CPSF4O95639 MTND2P41-201ENST00000637599 773 ntBASIC2.16□□□□□ -2.06
CPSF4O95639 AC006927.2-201ENST00000639256 389 ntBASIC2.16□□□□□ -2.06
CPSF4O95639 AP000550.4-201ENST00000639507 358 ntTSL 3 BASIC2.16□□□□□ -2.06
CPSF4O95639 SKIL-203ENST00000426052 2757 ntTSL 2 BASIC2.16□□□□□ -2.06
CPSF4O95639 HIF1A-201ENST00000323441 3555 ntTSL 1 (best) BASIC2.16□□□□□ -2.06
CPSF4O95639 AGTPBP1-205ENST00000376083 4208 ntAPPRIS P1 TSL 1 (best) BASIC2.16□□□□□ -2.06
CPSF4O95639 SLC25A46-208ENST00000513807 1546 ntTSL 2 BASIC2.16□□□□□ -2.06
CPSF4O95639 ENAM-201ENST00000396073 5679 ntAPPRIS P1 TSL 1 (best) BASIC2.16□□□□□ -2.06
CPSF4O95639 SYT14-204ENST00000472886 2966 ntAPPRIS P3 TSL 1 (best) BASIC2.16□□□□□ -2.06
CPSF4O95639 NOX4-202ENST00000343727 3347 ntTSL 2 BASIC2.16□□□□□ -2.06
CPSF4O95639 ZNF720P1-201ENST00000562403 1939 ntBASIC2.15□□□□□ -2.06
CPSF4O95639 ARHGAP15-202ENST00000409869 2968 ntTSL 5 BASIC2.15□□□□□ -2.07
CPSF4O95639 AC103988.1-201ENST00000566382 2177 ntBASIC2.15□□□□□ -2.07
CPSF4O95639 AC244517.1-201ENST00000606030 2086 ntBASIC2.15□□□□□ -2.07
CPSF4O95639 RNU6-50P-201ENST00000362356 103 ntBASIC2.15□□□□□ -2.07
CPSF4O95639 RNU6-1249P-201ENST00000363237 111 ntBASIC2.15□□□□□ -2.07
CPSF4O95639 MIR217-201ENST00000384817 110 ntBASIC2.15□□□□□ -2.07
CPSF4O95639 TRAV24-201ENST00000390453 343 ntAPPRIS P1 BASIC2.15□□□□□ -2.07
CPSF4O95639 AL031679.1-201ENST00000400616 525 ntBASIC2.15□□□□□ -2.07
CPSF4O95639 TMSB4XP8-201ENST00000402089 135 ntBASIC2.15□□□□□ -2.07
CPSF4O95639 AL133264.1-201ENST00000407157 562 ntBASIC2.15□□□□□ -2.07
CPSF4O95639 U3.37-201ENST00000408528 213 ntBASIC2.15□□□□□ -2.07
CPSF4O95639 AL391863.2-201ENST00000411838 681 ntTSL 2 BASIC2.15□□□□□ -2.07
CPSF4O95639 AC013286.1-201ENST00000412137 381 ntTSL 5 BASIC2.15□□□□□ -2.07
CPSF4O95639 TMSB4XP6-201ENST00000415187 135 ntBASIC2.15□□□□□ -2.07
CPSF4O95639 AC093865.1-201ENST00000415387 433 ntTSL 3 BASIC2.15□□□□□ -2.07
CPSF4O95639 AL121904.1-202ENST00000416638 656 ntTSL 5 BASIC2.15□□□□□ -2.07
CPSF4O95639 SSXP9-201ENST00000417503 292 ntBASIC2.15□□□□□ -2.07
CPSF4O95639 ATG3P1-201ENST00000419507 911 ntBASIC2.15□□□□□ -2.07
CPSF4O95639 TMSB4XP1-201ENST00000424567 135 ntBASIC2.15□□□□□ -2.07
CPSF4O95639 AC013262.1-201ENST00000426710 252 ntBASIC2.15□□□□□ -2.07
CPSF4O95639 AP000949.1-201ENST00000438328 629 ntBASIC2.15□□□□□ -2.07
CPSF4O95639 RPL23AP16-201ENST00000441715 421 ntBASIC2.15□□□□□ -2.07
CPSF4O95639 HMGN1P5-201ENST00000448591 263 ntBASIC2.15□□□□□ -2.07
CPSF4O95639 COX6CP18-201ENST00000448769 222 ntBASIC2.15□□□□□ -2.07
CPSF4O95639 MDM2-217ENST00000478070 692 ntTSL 1 (best) BASIC2.15□□□□□ -2.07
CPSF4O95639 MND1-203ENST00000504860 638 ntTSL 1 (best) BASIC2.15□□□□□ -2.07
CPSF4O95639 AC096734.1-201ENST00000511279 1128 ntTSL 1 (best) BASIC2.15□□□□□ -2.07
CPSF4O95639 LINC02100-201ENST00000512978 238 ntTSL 3 BASIC2.15□□□□□ -2.07
CPSF4O95639 TET2-AS1-201ENST00000515414 537 ntTSL 5 BASIC2.15□□□□□ -2.07
CPSF4O95639 RNU6ATAC9P-201ENST00000516210 116 ntBASIC2.15□□□□□ -2.07
CPSF4O95639 snoZ278.1-201ENST00000517059 112 ntBASIC2.15□□□□□ -2.07
CPSF4O95639 AC015468.3-201ENST00000518967 417 ntTSL 2 BASIC2.15□□□□□ -2.07
CPSF4O95639 AP005357.1-201ENST00000520749 476 ntTSL 3 BASIC2.15□□□□□ -2.07
CPSF4O95639 ARL2BPP5-201ENST00000523141 481 ntBASIC2.15□□□□□ -2.07
CPSF4O95639 MTCYBP20-201ENST00000524239 1129 ntBASIC2.15□□□□□ -2.07
CPSF4O95639 AC019227.1-201ENST00000526902 510 ntBASIC2.15□□□□□ -2.07
CPSF4O95639 AC104237.1-201ENST00000527443 539 ntTSL 4 BASIC2.15□□□□□ -2.07
CPSF4O95639 AC118942.1-202ENST00000529081 578 ntTSL 5 BASIC2.15□□□□□ -2.07
CPSF4O95639 PRELID2P1-201ENST00000552837 301 ntBASIC2.15□□□□□ -2.07
CPSF4O95639 AC044913.1-201ENST00000557200 430 ntBASIC2.15□□□□□ -2.07
CPSF4O95639 AL136298.1-201ENST00000557371 566 ntTSL 3 BASIC2.15□□□□□ -2.07
CPSF4O95639 CERS3-AS1-201ENST00000560643 372 ntTSL 3 BASIC2.15□□□□□ -2.07
CPSF4O95639 AC005774.1-201ENST00000565247 567 ntTSL 4 BASIC2.15□□□□□ -2.07
CPSF4O95639 AC007610.2-201ENST00000566770 666 ntTSL 3 BASIC2.15□□□□□ -2.07
CPSF4O95639 AC097717.1-211ENST00000600604 687 ntTSL 5 BASIC2.15□□□□□ -2.07
CPSF4O95639 AL355812.1-201ENST00000603215 216 ntBASIC2.15□□□□□ -2.07
CPSF4O95639 RPL23AP88-201ENST00000605759 454 ntBASIC2.15□□□□□ -2.07
CPSF4O95639 LINC00310-205ENST00000609062 863 ntTSL 5 BASIC2.15□□□□□ -2.07
CPSF4O95639 AC018926.1-201ENST00000616335 435 ntBASIC2.15□□□□□ -2.07
CPSF4O95639 AC068831.7-201ENST00000616954 363 ntBASIC2.15□□□□□ -2.07
CPSF4O95639 AC009318.4-201ENST00000620496 486 ntBASIC2.15□□□□□ -2.07
CPSF4O95639 AP000943.4-201ENST00000622912 357 ntBASIC2.15□□□□□ -2.07
CPSF4O95639 AP003485.2-201ENST00000623636 610 ntBASIC2.15□□□□□ -2.07
CPSF4O95639 AC006963.1-201ENST00000624003 1052 ntBASIC2.15□□□□□ -2.07
CPSF4O95639 ZBBX-202ENST00000392764 2849 ntAPPRIS ALT2 TSL 1 (best) BASIC2.15□□□□□ -2.07
CPSF4O95639 CEP83-202ENST00000397807 2737 ntTSL 5 BASIC2.15□□□□□ -2.07
CPSF4O95639 SUCLA2P2-201ENST00000417269 1309 ntBASIC2.15□□□□□ -2.07
CPSF4O95639 C1D-201ENST00000355848 2233 ntAPPRIS P1 TSL 1 (best) BASIC2.14□□□□□ -2.07
CPSF4O95639 OR51A4-202ENST00000641898 4393 ntAPPRIS P1 BASIC2.14□□□□□ -2.07
CPSF4O95639 MCMDC2-201ENST00000313616 2043 ntTSL 2 BASIC2.14□□□□□ -2.07
CPSF4O95639 AC092435.3-201ENST00000565538 3654 ntBASIC2.14□□□□□ -2.07
CPSF4O95639 GYPA-202ENST00000360771 2659 ntAPPRIS P3 TSL 1 (best) BASIC2.14□□□□□ -2.07
CPSF4O95639 CFHR4-201ENST00000251424 1292 ntTSL 1 (best) BASIC2.14□□□□□ -2.07
CPSF4O95639 SNORD82-201ENST00000365530 70 ntBASIC2.14□□□□□ -2.07
CPSF4O95639 MIR483-201ENST00000385070 76 ntBASIC2.14□□□□□ -2.07
CPSF4O95639 RNU6-821P-201ENST00000390995 107 ntBASIC2.14□□□□□ -2.07
CPSF4O95639 AL591034.1-201ENST00000407447 340 ntBASIC2.14□□□□□ -2.07
CPSF4O95639 AL133384.1-201ENST00000412744 351 ntBASIC2.14□□□□□ -2.07
CPSF4O95639 AC004014.1-201ENST00000413406 538 ntTSL 4 BASIC2.14□□□□□ -2.07
CPSF4O95639 BOLA3P4-201ENST00000418151 400 ntBASIC2.14□□□□□ -2.07
CPSF4O95639 LINC00368-201ENST00000422994 650 ntTSL 1 (best) BASIC2.14□□□□□ -2.07
CPSF4O95639 LINC01040-201ENST00000425048 666 ntTSL 2 BASIC2.14□□□□□ -2.07
CPSF4O95639 AC069257.1-202ENST00000425275 422 ntTSL 3 BASIC2.14□□□□□ -2.07
CPSF4O95639 Z93242.1-201ENST00000427102 353 ntBASIC2.14□□□□□ -2.07
CPSF4O95639 OFD1P12Y-201ENST00000427963 1207 ntBASIC2.14□□□□□ -2.07
CPSF4O95639 AC092634.2-201ENST00000428146 1010 ntBASIC2.14□□□□□ -2.07
CPSF4O95639 OFD1P13Y-201ENST00000431179 1232 ntBASIC2.14□□□□□ -2.07
CPSF4O95639 LIX1L-AS1-204ENST00000437207 222 ntTSL 5 BASIC2.14□□□□□ -2.07
CPSF4O95639 AC069540.2-201ENST00000441776 351 ntTSL 3 BASIC2.14□□□□□ -2.07
Retrieved 100 of 98,524 protein–RNA pairs in 106.4 ms