Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 AL391684.1-201ENST00000416191 2998 ntTSL 5 BASIC3.39□□□□□ -1.87
LMX1BO60663 PUS7L-207ENST00000551923 3313 ntAPPRIS P1 TSL 1 (best) BASIC3.39□□□□□ -1.87
LMX1BO60663 PTPN12-206ENST00000435495 2526 ntTSL 2 BASIC3.39□□□□□ -1.87
LMX1BO60663 SEC31A-215ENST00000505472 4159 ntTSL 5 BASIC3.39□□□□□ -1.87
LMX1BO60663 NDST4-201ENST00000264363 3351 ntAPPRIS P1 TSL 1 (best) BASIC3.39□□□□□ -1.87
LMX1BO60663 FRYL-205ENST00000503238 11103 ntAPPRIS P1 TSL 5 BASIC3.39□□□□□ -1.87
LMX1BO60663 PKIB-201ENST00000258014 1595 ntTSL 2 BASIC3.39□□□□□ -1.87
LMX1BO60663 CENPI-202ENST00000372927 3262 ntAPPRIS P3 TSL 5 BASIC3.39□□□□□ -1.87
LMX1BO60663 P2RY13-201ENST00000325602 2764 ntAPPRIS P1 TSL 1 (best) BASIC3.39□□□□□ -1.87
LMX1BO60663 PRRG1-202ENST00000449135 4481 ntAPPRIS P1 TSL 1 (best) BASIC3.39□□□□□ -1.87
LMX1BO60663 KYNU-202ENST00000375773 1772 ntTSL 1 (best) BASIC3.39□□□□□ -1.87
LMX1BO60663 Y_RNA.296-201ENST00000364930 108 ntBASIC3.39□□□□□ -1.87
LMX1BO60663 AKAP14-203ENST00000371425 793 ntAPPRIS ALT2 TSL 5 BASIC3.39□□□□□ -1.87
LMX1BO60663 HMGN2P8-201ENST00000391458 268 ntBASIC3.39□□□□□ -1.87
LMX1BO60663 AL024474.1-201ENST00000404655 591 ntBASIC3.39□□□□□ -1.87
LMX1BO60663 FCF1P10-201ENST00000407590 479 ntBASIC3.39□□□□□ -1.87
LMX1BO60663 SNORA57.3-201ENST00000411095 141 ntBASIC3.39□□□□□ -1.87
LMX1BO60663 AC138393.2-201ENST00000414742 246 ntBASIC3.39□□□□□ -1.87
LMX1BO60663 MTND3P17-201ENST00000416968 344 ntBASIC3.39□□□□□ -1.87
LMX1BO60663 HMGB3P20-201ENST00000417997 600 ntBASIC3.39□□□□□ -1.87
LMX1BO60663 PIGFP2-201ENST00000421400 651 ntBASIC3.39□□□□□ -1.87
LMX1BO60663 AL033504.1-201ENST00000427015 773 ntTSL 2 BASIC3.39□□□□□ -1.87
LMX1BO60663 ISCA1P6-201ENST00000427740 390 ntBASIC3.39□□□□□ -1.87
LMX1BO60663 MTCO2P11-201ENST00000431069 680 ntBASIC3.39□□□□□ -1.87
LMX1BO60663 RPS6P12-201ENST00000432491 726 ntBASIC3.39□□□□□ -1.87
LMX1BO60663 ATP5HP2-201ENST00000433885 485 ntBASIC3.39□□□□□ -1.87
LMX1BO60663 MTCYBP45-201ENST00000435243 565 ntBASIC3.39□□□□□ -1.87
LMX1BO60663 SKP1P1-201ENST00000438081 489 ntBASIC3.39□□□□□ -1.87
LMX1BO60663 MTCO3P18-201ENST00000440206 761 ntBASIC3.39□□□□□ -1.87
LMX1BO60663 AL354936.1-201ENST00000441521 649 ntTSL 5 BASIC3.39□□□□□ -1.87
LMX1BO60663 NDUFS5P3-201ENST00000450668 321 ntBASIC3.39□□□□□ -1.87
LMX1BO60663 AL359385.1-201ENST00000456509 365 ntBASIC3.39□□□□□ -1.87
LMX1BO60663 LINC01546-201ENST00000457435 674 ntTSL 2 BASIC3.39□□□□□ -1.87
LMX1BO60663 snoU13.24-201ENST00000458998 104 ntBASIC3.39□□□□□ -1.87
LMX1BO60663 PABPC1P3-201ENST00000469174 459 ntBASIC3.39□□□□□ -1.87
LMX1BO60663 RBM43P1-201ENST00000476891 1081 ntBASIC3.39□□□□□ -1.87
LMX1BO60663 AL365356.5-201ENST00000478294 697 ntTSL 2 BASIC3.39□□□□□ -1.87
LMX1BO60663 RPS29P25-201ENST00000481709 171 ntBASIC3.39□□□□□ -1.87
LMX1BO60663 AC104057.1-201ENST00000515547 497 ntBASIC3.39□□□□□ -1.87
LMX1BO60663 RNU6-528P-201ENST00000516926 100 ntBASIC3.39□□□□□ -1.87
LMX1BO60663 RNU6-201P-201ENST00000517100 61 ntBASIC3.39□□□□□ -1.87
LMX1BO60663 AC104393.1-201ENST00000517495 255 ntTSL 3 BASIC3.39□□□□□ -1.87
LMX1BO60663 NARSP2-201ENST00000518524 679 ntBASIC3.39□□□□□ -1.87
LMX1BO60663 AC087369.1-201ENST00000520775 996 ntBASIC3.39□□□□□ -1.87
LMX1BO60663 AC022861.1-201ENST00000522981 663 ntBASIC3.39□□□□□ -1.87
LMX1BO60663 AC090539.1-201ENST00000523907 434 ntTSL 3 BASIC3.39□□□□□ -1.87
LMX1BO60663 AC090857.2-201ENST00000526362 723 ntTSL 2 BASIC3.39□□□□□ -1.87
LMX1BO60663 AL354920.1-202ENST00000531661 1017 ntTSL 1 (best) BASIC3.39□□□□□ -1.87
LMX1BO60663 UNC13C-202ENST00000539562 938 ntTSL 1 (best) BASIC3.39□□□□□ -1.87
LMX1BO60663 AC009511.1-201ENST00000543527 191 ntTSL 5 BASIC3.39□□□□□ -1.87
LMX1BO60663 LINC02490-201ENST00000559915 601 ntTSL 3 BASIC3.39□□□□□ -1.87
LMX1BO60663 AC107954.1-201ENST00000565906 727 ntBASIC3.39□□□□□ -1.87
LMX1BO60663 ALDH3A2-208ENST00000571163 590 ntTSL 5 BASIC3.39□□□□□ -1.87
LMX1BO60663 AL513324.1-201ENST00000575236 632 ntTSL 5 BASIC3.39□□□□□ -1.87
LMX1BO60663 MIR5186-201ENST00000577504 120 ntBASIC3.39□□□□□ -1.87
LMX1BO60663 AC015908.2-202ENST00000585243 756 ntTSL 3 BASIC3.39□□□□□ -1.87
LMX1BO60663 AL353997.4-201ENST00000586196 166 ntBASIC3.39□□□□□ -1.87
LMX1BO60663 TTN-AS1-228ENST00000589234 751 ntTSL 5 BASIC3.39□□□□□ -1.87
LMX1BO60663 RPS4XP16-203ENST00000596904 698 ntTSL 5 BASIC3.39□□□□□ -1.87
LMX1BO60663 BRDTP1-201ENST00000605735 677 ntBASIC3.39□□□□□ -1.87
LMX1BO60663 AC080013.4-201ENST00000607624 649 ntBASIC3.39□□□□□ -1.87
LMX1BO60663 AL391813.2-201ENST00000609113 322 ntBASIC3.39□□□□□ -1.87
LMX1BO60663 AC084757.4-201ENST00000616350 526 ntBASIC3.39□□□□□ -1.87
LMX1BO60663 AC009268.2-201ENST00000621925 457 ntBASIC3.39□□□□□ -1.87
LMX1BO60663 AC000123.2-201ENST00000623124 461 ntBASIC3.39□□□□□ -1.87
LMX1BO60663 AL732618.1-201ENST00000623251 301 ntBASIC3.39□□□□□ -1.87
LMX1BO60663 ABCA9-AS1-203ENST00000627596 426 ntTSL 5 BASIC3.39□□□□□ -1.87
LMX1BO60663 AC092017.3-201ENST00000638880 536 ntAPPRIS P1 TSL 5 BASIC3.39□□□□□ -1.87
LMX1BO60663 DMXL1-201ENST00000311085 11072 ntAPPRIS P1 TSL 1 (best) BASIC3.39□□□□□ -1.87
LMX1BO60663 TNFAIP8-203ENST00000415806 1990 ntTSL 1 (best) BASIC3.39□□□□□ -1.87
LMX1BO60663 PHTF2-201ENST00000248550 4778 ntTSL 1 (best) BASIC3.39□□□□□ -1.87
LMX1BO60663 NCAPGP1-201ENST00000505112 1814 ntBASIC3.39□□□□□ -1.87
LMX1BO60663 OR4S2-202ENST00000641692 2211 ntAPPRIS P1 BASIC3.39□□□□□ -1.87
LMX1BO60663 LGI1-210ENST00000629035 2251 ntTSL 5 BASIC3.39□□□□□ -1.87
LMX1BO60663 LTN1-207ENST00000614971 7756 ntTSL 1 (best) BASIC3.38□□□□□ -1.87
LMX1BO60663 MTND5P28-201ENST00000438005 1594 ntBASIC3.38□□□□□ -1.87
LMX1BO60663 XIRP2-204ENST00000409273 12269 ntTSL 1 (best) BASIC3.38□□□□□ -1.87
LMX1BO60663 SAGE4P-201ENST00000442271 3381 ntBASIC3.38□□□□□ -1.87
LMX1BO60663 SGO1-AS1-203ENST00000455626 2041 ntTSL 1 (best) BASIC3.38□□□□□ -1.87
LMX1BO60663 GNG5P1-201ENST00000255500 204 ntBASIC3.38□□□□□ -1.87
LMX1BO60663 HSFY1-202ENST00000309834 1038 ntAPPRIS ALT2 TSL 1 (best) BASIC3.38□□□□□ -1.87
LMX1BO60663 EDDM3A-201ENST00000326842 927 ntAPPRIS P1 TSL 1 (best) BASIC3.38□□□□□ -1.87
LMX1BO60663 OR6C70-201ENST00000327335 939 ntAPPRIS P1 BASIC3.38□□□□□ -1.87
LMX1BO60663 HSFY2-202ENST00000344884 1038 ntAPPRIS ALT2 TSL 1 (best) BASIC3.38□□□□□ -1.87
LMX1BO60663 ACEA_U3.1-201ENST00000363057 217 ntBASIC3.38□□□□□ -1.87
LMX1BO60663 RNU4-1-201ENST00000363925 141 ntBASIC3.38□□□□□ -1.87
LMX1BO60663 RNU6-282P-201ENST00000365357 103 ntBASIC3.38□□□□□ -1.87
LMX1BO60663 Y_RNA.409-201ENST00000383990 98 ntBASIC3.38□□□□□ -1.87
LMX1BO60663 RNU4-55P-201ENST00000410731 137 ntBASIC3.38□□□□□ -1.87
LMX1BO60663 SPA17P1-201ENST00000416656 452 ntBASIC3.38□□□□□ -1.87
LMX1BO60663 AC233728.2-201ENST00000425348 757 ntBASIC3.38□□□□□ -1.87
LMX1BO60663 TIMM9P3-201ENST00000428659 274 ntBASIC3.38□□□□□ -1.87
LMX1BO60663 LINC01797-202ENST00000433432 765 ntTSL 3 BASIC3.38□□□□□ -1.87
LMX1BO60663 AC112518.1-201ENST00000436089 575 ntTSL 4 BASIC3.38□□□□□ -1.87
LMX1BO60663 RPL23AP74-201ENST00000437246 471 ntBASIC3.38□□□□□ -1.87
LMX1BO60663 LINC00113-203ENST00000442550 572 ntTSL 3 BASIC3.38□□□□□ -1.87
LMX1BO60663 AC010975.1-201ENST00000443301 669 ntTSL 3 BASIC3.38□□□□□ -1.87
LMX1BO60663 AC114485.1-201ENST00000447916 657 ntTSL 3 BASIC3.38□□□□□ -1.87
LMX1BO60663 AC132479.1-201ENST00000449160 144 ntBASIC3.38□□□□□ -1.87
LMX1BO60663 AC005871.1-201ENST00000450247 475 ntTSL 3 BASIC3.38□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 79 ms