Protein–RNA interactions for Protein: O00257

CBX4, E3 SUMO-protein ligase CBX4, humanhuman

Predictions only

Length 560 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4O00257 AC010525.2-201ENST00000590920 195 ntBASIC4.59□□□□□ -1.67
CBX4O00257 AC015911.9-201ENST00000591634 185 ntTSL 5 BASIC4.59□□□□□ -1.67
CBX4O00257 BPIFA4P-203ENST00000603168 689 ntBASIC4.59□□□□□ -1.67
CBX4O00257 KIAA1524-208ENST00000625495 147 ntTSL 5 BASIC4.59□□□□□ -1.67
CBX4O00257 AC073172.1-201ENST00000636967 851 ntTSL 5 BASIC4.59□□□□□ -1.67
CBX4O00257 ATM-228ENST00000639240 498 ntTSL 5 BASIC4.59□□□□□ -1.67
CBX4O00257 ATM-230ENST00000640388 578 ntTSL 5 BASIC4.59□□□□□ -1.67
CBX4O00257 AL645937.1-201ENST00000641739 1652 ntBASIC4.59□□□□□ -1.67
CBX4O00257 AC125257.1-201ENST00000560400 2930 ntBASIC4.59□□□□□ -1.68
CBX4O00257 C15orf41-212ENST00000567389 2618 ntTSL 1 (best) BASIC4.59□□□□□ -1.68
CBX4O00257 BDP1P-201ENST00000582658 1990 ntBASIC4.58□□□□□ -1.68
CBX4O00257 OR4G1P-203ENST00000641984 1631 ntBASIC4.58□□□□□ -1.68
CBX4O00257 RNF111-212ENST00000561186 4536 ntTSL 2 BASIC4.58□□□□□ -1.68
CBX4O00257 MAP3K19-203ENST00000375845 4369 ntAPPRIS P3 TSL 1 (best) BASIC4.58□□□□□ -1.68
CBX4O00257 MTND4P29-201ENST00000503122 1372 ntBASIC4.58□□□□□ -1.68
CBX4O00257 SPAG11A-202ENST00000326625 445 ntTSL 5 BASIC4.58□□□□□ -1.68
CBX4O00257 SNORA23-201ENST00000365128 182 ntBASIC4.58□□□□□ -1.68
CBX4O00257 U3.15-201ENST00000365398 212 ntBASIC4.58□□□□□ -1.68
CBX4O00257 CD3D-202ENST00000392884 476 ntTSL 2 BASIC4.58□□□□□ -1.68
CBX4O00257 AC011243.1-201ENST00000420184 415 ntTSL 3 BASIC4.58□□□□□ -1.68
CBX4O00257 RPL36AP53-201ENST00000432891 316 ntBASIC4.58□□□□□ -1.68
CBX4O00257 AL136084.2-202ENST00000433997 353 ntTSL 2 BASIC4.58□□□□□ -1.68
CBX4O00257 AC093019.1-201ENST00000443135 252 ntBASIC4.58□□□□□ -1.68
CBX4O00257 CBWD4P-201ENST00000445695 655 ntBASIC4.58□□□□□ -1.68
CBX4O00257 AL078587.1-201ENST00000448580 542 ntTSL 5 BASIC4.58□□□□□ -1.68
CBX4O00257 SNORD108-201ENST00000459332 71 ntBASIC4.58□□□□□ -1.68
CBX4O00257 RPL39P36-201ENST00000490784 156 ntBASIC4.58□□□□□ -1.68
CBX4O00257 AC100773.1-201ENST00000505409 520 ntTSL 5 BASIC4.58□□□□□ -1.68
CBX4O00257 LINC01333-201ENST00000508083 724 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
CBX4O00257 RNU4ATAC8P-201ENST00000516196 109 ntBASIC4.58□□□□□ -1.68
CBX4O00257 RNU6-390P-201ENST00000516259 103 ntBASIC4.58□□□□□ -1.68
CBX4O00257 HMGB1P19-201ENST00000517578 577 ntBASIC4.58□□□□□ -1.68
CBX4O00257 IGHVIII-2-1-201ENST00000518843 291 ntBASIC4.58□□□□□ -1.68
CBX4O00257 AC109466.1-211ENST00000519327 496 ntTSL 3 BASIC4.58□□□□□ -1.68
CBX4O00257 AC104232.2-201ENST00000519680 769 ntTSL 5 BASIC4.58□□□□□ -1.68
CBX4O00257 AC008415.1-201ENST00000522189 734 ntTSL 5 BASIC4.58□□□□□ -1.68
CBX4O00257 AP000827.1-201ENST00000527814 258 ntBASIC4.58□□□□□ -1.68
CBX4O00257 LINC00644-201ENST00000555156 295 ntTSL 2 BASIC4.58□□□□□ -1.68
CBX4O00257 AL445074.1-201ENST00000555362 318 ntTSL 2 BASIC4.58□□□□□ -1.68
CBX4O00257 AL359237.1-202ENST00000556168 487 ntTSL 5 BASIC4.58□□□□□ -1.68
CBX4O00257 AC023034.1-201ENST00000558141 518 ntTSL 3 BASIC4.58□□□□□ -1.68
CBX4O00257 MIR4775-201ENST00000581168 75 ntBASIC4.58□□□□□ -1.68
CBX4O00257 AC011825.2-201ENST00000583138 553 ntTSL 4 BASIC4.58□□□□□ -1.68
CBX4O00257 MIR3138-201ENST00000585238 82 ntBASIC4.58□□□□□ -1.68
CBX4O00257 AC006504.2-201ENST00000589471 458 ntTSL 3 BASIC4.58□□□□□ -1.68
CBX4O00257 XIAPP1-201ENST00000603162 600 ntBASIC4.58□□□□□ -1.68
CBX4O00257 AC010680.3-201ENST00000604215 520 ntBASIC4.58□□□□□ -1.68
CBX4O00257 uc_338.11-201ENST00000619132 160 ntBASIC4.58□□□□□ -1.68
CBX4O00257 CDKN3-212ENST00000620759 196 ntTSL 5 BASIC4.58□□□□□ -1.68
CBX4O00257 AC110801.1-201ENST00000623590 212 ntBASIC4.58□□□□□ -1.68
CBX4O00257 PTPN13-201ENST00000316707 7546 ntAPPRIS ALT2 TSL 1 (best) BASIC4.58□□□□□ -1.68
CBX4O00257 AL050331.3-201ENST00000448740 2081 ntTSL 2 BASIC4.58□□□□□ -1.68
CBX4O00257 CACNB4-233ENST00000636773 4143 ntTSL 5 BASIC4.58□□□□□ -1.68
CBX4O00257 LINC01847-201ENST00000522627 5607 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
CBX4O00257 FAR2-203ENST00000547116 1787 ntTSL 2 BASIC4.58□□□□□ -1.68
CBX4O00257 C12orf60-201ENST00000330828 1684 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
CBX4O00257 AP001273.1-201ENST00000624493 3152 ntBASIC4.57□□□□□ -1.68
CBX4O00257 FANCI-202ENST00000310775 4743 ntAPPRIS ALT2 TSL 1 (best) BASIC4.57□□□□□ -1.68
CBX4O00257 LINC01239-202ENST00000436786 2347 ntTSL 2 BASIC4.57□□□□□ -1.68
CBX4O00257 RASGEF1B-207ENST00000509081 3016 ntAPPRIS ALT1 TSL 5 BASIC4.57□□□□□ -1.68
CBX4O00257 MAPK10-286ENST00000641208 8747 ntBASIC4.57□□□□□ -1.68
CBX4O00257 NFIB-203ENST00000380934 2142 ntTSL 2 BASIC4.57□□□□□ -1.68
CBX4O00257 OR2L3-201ENST00000359959 2792 ntAPPRIS P1 BASIC4.57□□□□□ -1.68
CBX4O00257 RNU6-188P-201ENST00000364207 107 ntBASIC4.57□□□□□ -1.68
CBX4O00257 BTLA-202ENST00000383680 726 ntAPPRIS ALT2 TSL 1 (best) BASIC4.57□□□□□ -1.68
CBX4O00257 SNORA37-201ENST00000384504 129 ntBASIC4.57□□□□□ -1.68
CBX4O00257 MT-TD-201ENST00000387419 68 ntBASIC4.57□□□□□ -1.68
CBX4O00257 RNU6-882P-201ENST00000391025 103 ntBASIC4.57□□□□□ -1.68
CBX4O00257 AL359634.1-202ENST00000404721 284 ntBASIC4.57□□□□□ -1.68
CBX4O00257 RNU2-29P-201ENST00000410423 189 ntBASIC4.57□□□□□ -1.68
CBX4O00257 AL158834.2-201ENST00000415731 696 ntTSL 2 BASIC4.57□□□□□ -1.68
CBX4O00257 TMSB10P2-201ENST00000416049 131 ntBASIC4.57□□□□□ -1.68
CBX4O00257 AC009161.1-201ENST00000417306 376 ntBASIC4.57□□□□□ -1.68
CBX4O00257 AC005062.1-207ENST00000418442 587 ntTSL 3 BASIC4.57□□□□□ -1.68
CBX4O00257 AL356387.2-201ENST00000422272 243 ntBASIC4.57□□□□□ -1.68
CBX4O00257 RPL21P91-201ENST00000429231 479 ntBASIC4.57□□□□□ -1.68
CBX4O00257 RPL23AP25-201ENST00000430973 463 ntBASIC4.57□□□□□ -1.68
CBX4O00257 AC105940.1-201ENST00000434265 353 ntTSL 3 BASIC4.57□□□□□ -1.68
CBX4O00257 AC090774.1-201ENST00000435925 246 ntBASIC4.57□□□□□ -1.68
CBX4O00257 LINC01510-201ENST00000441991 468 ntTSL 3 BASIC4.57□□□□□ -1.68
CBX4O00257 ELOCP23-201ENST00000452014 332 ntBASIC4.57□□□□□ -1.68
CBX4O00257 RPL23AP24-201ENST00000458203 385 ntBASIC4.57□□□□□ -1.68
CBX4O00257 AC079804.1-201ENST00000461922 436 ntBASIC4.57□□□□□ -1.68
CBX4O00257 AC097467.1-201ENST00000513660 370 ntTSL 5 BASIC4.57□□□□□ -1.68
CBX4O00257 MTCO1P35-201ENST00000515270 228 ntBASIC4.57□□□□□ -1.68
CBX4O00257 RNU4-29P-201ENST00000515943 174 ntBASIC4.57□□□□□ -1.68
CBX4O00257 SUB1P1-201ENST00000524415 382 ntBASIC4.57□□□□□ -1.68
CBX4O00257 AC093012.1-202ENST00000549403 582 ntBASIC4.57□□□□□ -1.68
CBX4O00257 AC023824.4-201ENST00000562572 476 ntTSL 3 BASIC4.57□□□□□ -1.68
CBX4O00257 AC129492.2-201ENST00000577807 517 ntTSL 3 BASIC4.57□□□□□ -1.68
CBX4O00257 AC116003.1-202ENST00000579386 501 ntTSL 3 BASIC4.57□□□□□ -1.68
CBX4O00257 AC105094.1-201ENST00000588245 316 ntTSL 3 BASIC4.57□□□□□ -1.68
CBX4O00257 PSMD5-AS1-203ENST00000589026 525 ntTSL 5 BASIC4.57□□□□□ -1.68
CBX4O00257 AC022150.3-201ENST00000599143 880 ntTSL 5 BASIC4.57□□□□□ -1.68
CBX4O00257 AC091905.2-201ENST00000623143 306 ntBASIC4.57□□□□□ -1.68
CBX4O00257 AC006355.2-201ENST00000629240 317 ntTSL 3 BASIC4.57□□□□□ -1.68
CBX4O00257 AC100810.6-201ENST00000638068 285 ntBASIC4.57□□□□□ -1.68
CBX4O00257 SCN1A-210ENST00000635776 10107 ntTSL 5 BASIC4.57□□□□□ -1.68
CBX4O00257 VIRMA-201ENST00000297591 6528 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
CBX4O00257 GABPB1-AS1-202ENST00000499624 16182 ntTSL 1 (best) BASIC4.57□□□□□ -1.68
Retrieved 100 of 98,524 protein–RNA pairs in 83.1 ms