Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 AP000811.1-201ENST00000603803 651 ntBASIC2.98□□□□□ -1.93
FOXA2Q9Y261 AC004908.2-201ENST00000609090 574 ntBASIC2.98□□□□□ -1.93
FOXA2Q9Y261 ANKRD36C-207ENST00000612359 650 ntTSL 1 (best) BASIC2.98□□□□□ -1.93
FOXA2Q9Y261 SDR42E1P2-201ENST00000614861 481 ntBASIC2.98□□□□□ -1.93
FOXA2Q9Y261 AC010133.1-201ENST00000615809 842 ntBASIC2.98□□□□□ -1.93
FOXA2Q9Y261 AC021755.4-201ENST00000616620 456 ntBASIC2.98□□□□□ -1.93
FOXA2Q9Y261 TTN-AS1-263ENST00000627527 784 ntTSL 5 BASIC2.98□□□□□ -1.93
FOXA2Q9Y261 AL391597.2-201ENST00000635698 479 ntTSL 5 BASIC2.98□□□□□ -1.93
FOXA2Q9Y261 AL732372.2-225ENST00000642124 456 ntBASIC2.98□□□□□ -1.93
FOXA2Q9Y261 HDX-202ENST00000373177 2924 ntAPPRIS P1 TSL 1 (best) BASIC2.98□□□□□ -1.93
FOXA2Q9Y261 GALNT1-201ENST00000269195 3847 ntAPPRIS P1 TSL 1 (best) BASIC2.98□□□□□ -1.93
FOXA2Q9Y261 IQCG-205ENST00000455191 1981 ntAPPRIS P1 TSL 2 BASIC2.98□□□□□ -1.93
FOXA2Q9Y261 RTTN-201ENST00000255674 6960 ntTSL 5 BASIC2.98□□□□□ -1.93
FOXA2Q9Y261 NDST3-201ENST00000296499 5961 ntAPPRIS P1 TSL 1 (best) BASIC2.97□□□□□ -1.93
FOXA2Q9Y261 TIGD2-201ENST00000317005 2083 ntAPPRIS P1 BASIC2.97□□□□□ -1.93
FOXA2Q9Y261 AL049641.1-201ENST00000441055 1948 ntBASIC2.97□□□□□ -1.93
FOXA2Q9Y261 IL23R-202ENST00000395227 1459 ntTSL 3 BASIC2.97□□□□□ -1.93
FOXA2Q9Y261 MTND5P33-201ENST00000571250 1450 ntBASIC2.97□□□□□ -1.93
FOXA2Q9Y261 RTN4-208ENST00000404909 4102 ntTSL 1 (best) BASIC2.97□□□□□ -1.93
FOXA2Q9Y261 KCNJ16-203ENST00000392671 3981 ntAPPRIS P1 TSL 2 BASIC2.97□□□□□ -1.93
FOXA2Q9Y261 CNOT6L-201ENST00000504123 8843 ntAPPRIS P1 TSL 2 BASIC2.97□□□□□ -1.93
FOXA2Q9Y261 SAMD3-214ENST00000532763 3690 ntTSL 5 BASIC2.97□□□□□ -1.93
FOXA2Q9Y261 RAD17-206ENST00000358030 2648 ntTSL 1 (best) BASIC2.97□□□□□ -1.93
FOXA2Q9Y261 FAM35A-202ENST00000298786 3614 ntTSL 5 BASIC2.97□□□□□ -1.93
FOXA2Q9Y261 ZGRF1-212ENST00000612287 2176 ntTSL 1 (best) BASIC2.97□□□□□ -1.93
FOXA2Q9Y261 MS4A1-212ENST00000534668 3475 ntAPPRIS P1 TSL 2 BASIC2.97□□□□□ -1.93
FOXA2Q9Y261 AC104454.1-201ENST00000421341 1401 ntBASIC2.97□□□□□ -1.93
FOXA2Q9Y261 NFIB-202ENST00000380924 840 ntTSL 5 BASIC2.97□□□□□ -1.93
FOXA2Q9Y261 RNU6-769P-201ENST00000384407 104 ntBASIC2.97□□□□□ -1.93
FOXA2Q9Y261 AL109755.1-201ENST00000401791 649 ntBASIC2.97□□□□□ -1.93
FOXA2Q9Y261 CCDC126-203ENST00000410069 890 ntAPPRIS P1 TSL 1 (best) BASIC2.97□□□□□ -1.93
FOXA2Q9Y261 RN7SKP156-201ENST00000410308 342 ntBASIC2.97□□□□□ -1.93
FOXA2Q9Y261 RN7SKP159-201ENST00000410657 292 ntBASIC2.97□□□□□ -1.93
FOXA2Q9Y261 RN7SKP140-201ENST00000411196 284 ntBASIC2.97□□□□□ -1.93
FOXA2Q9Y261 LINC02526-201ENST00000424162 419 ntTSL 2 BASIC2.97□□□□□ -1.93
FOXA2Q9Y261 RPL23AP69-201ENST00000431134 458 ntBASIC2.97□□□□□ -1.93
FOXA2Q9Y261 AL137789.1-201ENST00000439443 682 ntTSL 3 BASIC2.97□□□□□ -1.93
FOXA2Q9Y261 CBWD4P-201ENST00000445695 655 ntBASIC2.97□□□□□ -1.93
FOXA2Q9Y261 AL136097.2-201ENST00000457003 333 ntTSL 2 BASIC2.97□□□□□ -1.93
FOXA2Q9Y261 AC072039.1-201ENST00000477611 581 ntBASIC2.97□□□□□ -1.93
FOXA2Q9Y261 LINC02377-201ENST00000500169 450 ntTSL 3 BASIC2.97□□□□□ -1.93
FOXA2Q9Y261 AC118282.1-201ENST00000506408 765 ntBASIC2.97□□□□□ -1.93
FOXA2Q9Y261 RNU6-390P-201ENST00000516259 103 ntBASIC2.97□□□□□ -1.93
FOXA2Q9Y261 RNU6-352P-201ENST00000516908 107 ntBASIC2.97□□□□□ -1.93
FOXA2Q9Y261 AC018541.1-202ENST00000518687 584 ntTSL 4 BASIC2.97□□□□□ -1.93
FOXA2Q9Y261 EEF1A1P37-201ENST00000522748 715 ntBASIC2.97□□□□□ -1.93
FOXA2Q9Y261 AP000926.4-201ENST00000527351 454 ntBASIC2.97□□□□□ -1.93
FOXA2Q9Y261 AP002748.2-201ENST00000528671 348 ntBASIC2.97□□□□□ -1.93
FOXA2Q9Y261 AC103796.1-201ENST00000530663 358 ntTSL 1 (best) BASIC2.97□□□□□ -1.93
FOXA2Q9Y261 AC010185.1-201ENST00000542489 456 ntTSL 3 BASIC2.97□□□□□ -1.93
FOXA2Q9Y261 HIGD1AP1-201ENST00000550979 275 ntBASIC2.97□□□□□ -1.93
FOXA2Q9Y261 DNAJC8P1-201ENST00000554535 372 ntBASIC2.97□□□□□ -1.93
FOXA2Q9Y261 AC091544.5-202ENST00000568297 374 ntTSL 3 BASIC2.97□□□□□ -1.93
FOXA2Q9Y261 HMGB1P6-201ENST00000569046 646 ntBASIC2.97□□□□□ -1.93
FOXA2Q9Y261 AC135050.5-201ENST00000576336 543 ntTSL 4 BASIC2.97□□□□□ -1.93
FOXA2Q9Y261 ISCA1P3-201ENST00000577104 373 ntBASIC2.97□□□□□ -1.93
FOXA2Q9Y261 AC002545.1-201ENST00000592511 181 ntBASIC2.97□□□□□ -1.93
FOXA2Q9Y261 AC007038.2-201ENST00000608095 740 ntBASIC2.97□□□□□ -1.93
FOXA2Q9Y261 AL591441.2-201ENST00000620059 535 ntTSL 5 BASIC2.97□□□□□ -1.93
FOXA2Q9Y261 C3orf85-208ENST00000622536 925 ntAPPRIS P5 TSL 5 BASIC2.97□□□□□ -1.93
FOXA2Q9Y261 AC073308.1-201ENST00000623696 305 ntBASIC2.97□□□□□ -1.93
FOXA2Q9Y261 INPP4B-223ENST00000630044 354 ntTSL 5 BASIC2.97□□□□□ -1.93
FOXA2Q9Y261 MYCBP2-AS1-209ENST00000631152 412 ntTSL 5 BASIC2.97□□□□□ -1.93
FOXA2Q9Y261 SPTY2D1-AS1-205ENST00000635674 450 ntAPPRIS ALT2 TSL 2 BASIC2.97□□□□□ -1.93
FOXA2Q9Y261 TRIQK-212ENST00000520686 1808 ntAPPRIS P1 TSL 1 (best) BASIC2.97□□□□□ -1.93
FOXA2Q9Y261 LRRC70-201ENST00000334994 2249 ntAPPRIS P1 TSL 1 (best) BASIC2.97□□□□□ -1.93
FOXA2Q9Y261 IL33-201ENST00000381434 2641 ntAPPRIS P1 TSL 1 (best) BASIC2.97□□□□□ -1.93
FOXA2Q9Y261 FNDC3A-202ENST00000398316 5714 ntTSL 1 (best) BASIC2.96□□□□□ -1.93
FOXA2Q9Y261 PROS1-203ENST00000407433 3335 ntTSL 1 (best) BASIC2.96□□□□□ -1.93
FOXA2Q9Y261 ZNF804B-202ENST00000611114 3968 ntTSL 5 BASIC2.96□□□□□ -1.93
FOXA2Q9Y261 KIAA0586-209ENST00000556134 5912 ntAPPRIS ALT2 TSL 5 BASIC2.96□□□□□ -1.94
FOXA2Q9Y261 AL391994.1-201ENST00000254724 282 ntBASIC2.96□□□□□ -1.94
FOXA2Q9Y261 UTS2-202ENST00000361696 559 ntAPPRIS ALT2 TSL 1 (best) BASIC2.96□□□□□ -1.94
FOXA2Q9Y261 RNU6-741P-201ENST00000383889 107 ntBASIC2.96□□□□□ -1.94
FOXA2Q9Y261 RNU6-1027P-201ENST00000383998 107 ntBASIC2.96□□□□□ -1.94
FOXA2Q9Y261 RPL21P17-201ENST00000397467 475 ntBASIC2.96□□□□□ -1.94
FOXA2Q9Y261 AC110754.1-201ENST00000399740 601 ntBASIC2.96□□□□□ -1.94
FOXA2Q9Y261 AL158834.1-201ENST00000419441 466 ntTSL 5 BASIC2.96□□□□□ -1.94
FOXA2Q9Y261 AL591475.1-201ENST00000429060 489 ntTSL 2 BASIC2.96□□□□□ -1.94
FOXA2Q9Y261 AC007919.1-201ENST00000429380 217 ntBASIC2.96□□□□□ -1.94
FOXA2Q9Y261 AL596220.1-202ENST00000429768 314 ntTSL 3 BASIC2.96□□□□□ -1.94
FOXA2Q9Y261 AL008629.1-201ENST00000438615 184 ntBASIC2.96□□□□□ -1.94
FOXA2Q9Y261 TRIM60P18-201ENST00000441518 828 ntBASIC2.96□□□□□ -1.94
FOXA2Q9Y261 RPL7P36-201ENST00000444633 681 ntBASIC2.96□□□□□ -1.94
FOXA2Q9Y261 AL646090.1-201ENST00000449928 492 ntTSL 5 BASIC2.96□□□□□ -1.94
FOXA2Q9Y261 AC006042.4-201ENST00000451066 692 ntTSL 5 BASIC2.96□□□□□ -1.94
FOXA2Q9Y261 ZNF736P8Y-201ENST00000451913 669 ntBASIC2.96□□□□□ -1.94
FOXA2Q9Y261 MTUS2-AS2-203ENST00000452602 651 ntTSL 3 BASIC2.96□□□□□ -1.94
FOXA2Q9Y261 snoU13.28-201ENST00000459235 104 ntBASIC2.96□□□□□ -1.94
FOXA2Q9Y261 AC008481.1-201ENST00000463278 396 ntBASIC2.96□□□□□ -1.94
FOXA2Q9Y261 TNFAIP8-205ENST00000504642 711 ntTSL 3 BASIC2.96□□□□□ -1.94
FOXA2Q9Y261 AC021678.1-201ENST00000505195 936 ntBASIC2.96□□□□□ -1.94
FOXA2Q9Y261 OR5BM1P-201ENST00000512021 366 ntBASIC2.96□□□□□ -1.94
FOXA2Q9Y261 AC108043.1-201ENST00000512696 574 ntBASIC2.96□□□□□ -1.94
FOXA2Q9Y261 AC027335.1-201ENST00000515377 543 ntTSL 4 BASIC2.96□□□□□ -1.94
FOXA2Q9Y261 RN7SKP287-201ENST00000516546 266 ntBASIC2.96□□□□□ -1.94
FOXA2Q9Y261 RNU6-1282P-201ENST00000516735 96 ntBASIC2.96□□□□□ -1.94
FOXA2Q9Y261 RNU6-928P-201ENST00000516876 104 ntBASIC2.96□□□□□ -1.94
FOXA2Q9Y261 AP000907.2-201ENST00000530827 353 ntBASIC2.96□□□□□ -1.94
FOXA2Q9Y261 AC136475.4-201ENST00000534271 280 ntTSL 5 BASIC2.96□□□□□ -1.94
Retrieved 100 of 98,524 protein–RNA pairs in 113.5 ms