Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 AC103783.1-201ENST00000520506 373 ntBASIC3.1□□□□□ -1.91
LHX3Q9UBR4 XIRP2-AS1-201ENST00000525330 776 ntTSL 3 BASIC3.1□□□□□ -1.91
LHX3Q9UBR4 AL138812.1-201ENST00000525573 471 ntTSL 3 BASIC3.1□□□□□ -1.91
LHX3Q9UBR4 PSMA2P1-201ENST00000526365 646 ntBASIC3.1□□□□□ -1.91
LHX3Q9UBR4 AP001318.2-201ENST00000533378 492 ntTSL 3 BASIC3.1□□□□□ -1.91
LHX3Q9UBR4 IAPP-204ENST00000539393 409 ntAPPRIS P1 TSL 2 BASIC3.1□□□□□ -1.91
LHX3Q9UBR4 AC091691.2-201ENST00000581940 567 ntTSL 4 BASIC3.1□□□□□ -1.91
LHX3Q9UBR4 AC092296.3-201ENST00000589968 249 ntTSL 3 BASIC3.1□□□□□ -1.91
LHX3Q9UBR4 AC091057.2-201ENST00000602594 792 ntBASIC3.1□□□□□ -1.91
LHX3Q9UBR4 AC099566.1-205ENST00000609411 657 ntTSL 5 BASIC3.1□□□□□ -1.91
LHX3Q9UBR4 AC091953.5-201ENST00000622919 233 ntBASIC3.1□□□□□ -1.91
LHX3Q9UBR4 CGA-204ENST00000627148 1010 ntAPPRIS P1 TSL 1 (best) BASIC3.1□□□□□ -1.91
LHX3Q9UBR4 SYNE1-201ENST00000341594 26584 ntAPPRIS ALT2 TSL 5 BASIC3.1□□□□□ -1.91
LHX3Q9UBR4 DDX60L-207ENST00000505890 4568 ntTSL 2 BASIC3.1□□□□□ -1.91
LHX3Q9UBR4 AL353743.1-202ENST00000431724 1695 ntBASIC3.1□□□□□ -1.91
LHX3Q9UBR4 DDX43P2-201ENST00000604753 1354 ntBASIC3.1□□□□□ -1.91
LHX3Q9UBR4 AL050331.3-201ENST00000448740 2081 ntTSL 2 BASIC3.1□□□□□ -1.91
LHX3Q9UBR4 SLC35A1-201ENST00000369552 1851 ntAPPRIS P1 TSL 1 (best) BASIC3.09□□□□□ -1.91
LHX3Q9UBR4 DTHD1-202ENST00000456874 3365 ntAPPRIS P1 TSL 1 (best) BASIC3.09□□□□□ -1.91
LHX3Q9UBR4 DST-204ENST00000361203 22431 ntAPPRIS ALT2 TSL 5 BASIC3.09□□□□□ -1.91
LHX3Q9UBR4 FRG1BP-201ENST00000278882 761 ntBASIC3.09□□□□□ -1.91
LHX3Q9UBR4 MIR22-201ENST00000362190 85 ntBASIC3.09□□□□□ -1.91
LHX3Q9UBR4 U3.11-201ENST00000364476 212 ntBASIC3.09□□□□□ -1.91
LHX3Q9UBR4 AKAP14-202ENST00000371422 412 ntAPPRIS ALT2 TSL 1 (best) BASIC3.09□□□□□ -1.91
LHX3Q9UBR4 MIR128-1-201ENST00000384921 82 ntBASIC3.09□□□□□ -1.91
LHX3Q9UBR4 SUMO1-205ENST00000409205 534 ntTSL 2 BASIC3.09□□□□□ -1.91
LHX3Q9UBR4 RNU2-43P-201ENST00000410306 190 ntBASIC3.09□□□□□ -1.91
LHX3Q9UBR4 LANCL1-AS1-201ENST00000416344 714 ntTSL 3 BASIC3.09□□□□□ -1.91
LHX3Q9UBR4 MTCYBP38-201ENST00000417160 1123 ntBASIC3.09□□□□□ -1.91
LHX3Q9UBR4 AL390774.2-201ENST00000423942 788 ntTSL 3 BASIC3.09□□□□□ -1.91
LHX3Q9UBR4 AL357375.1-201ENST00000424274 525 ntTSL 3 BASIC3.09□□□□□ -1.91
LHX3Q9UBR4 ZYG11AP1-201ENST00000430329 837 ntBASIC3.09□□□□□ -1.91
LHX3Q9UBR4 AL683807.1-202ENST00000432272 382 ntTSL 2 BASIC3.09□□□□□ -1.91
LHX3Q9UBR4 CR769776.1-201ENST00000441254 787 ntBASIC3.09□□□□□ -1.91
LHX3Q9UBR4 MTND3P1-201ENST00000441336 220 ntBASIC3.09□□□□□ -1.91
LHX3Q9UBR4 MTND5P14-201ENST00000441481 1267 ntBASIC3.09□□□□□ -1.91
LHX3Q9UBR4 FGF7P5-201ENST00000441829 291 ntBASIC3.09□□□□□ -1.91
LHX3Q9UBR4 AC002381.1-201ENST00000447049 280 ntBASIC3.09□□□□□ -1.91
LHX3Q9UBR4 MYCBP2-AS1-202ENST00000448470 333 ntTSL 3 BASIC3.09□□□□□ -1.91
LHX3Q9UBR4 USP9YP10-201ENST00000454868 628 ntBASIC3.09□□□□□ -1.91
LHX3Q9UBR4 RNU7-170P-201ENST00000459303 61 ntBASIC3.09□□□□□ -1.91
LHX3Q9UBR4 RPL27AP5-201ENST00000469428 449 ntBASIC3.09□□□□□ -1.91
LHX3Q9UBR4 RPS27AP1-201ENST00000475545 471 ntBASIC3.09□□□□□ -1.91
LHX3Q9UBR4 AC091951.3-201ENST00000504093 246 ntBASIC3.09□□□□□ -1.91
LHX3Q9UBR4 CBX3P3-201ENST00000508108 532 ntBASIC3.09□□□□□ -1.91
LHX3Q9UBR4 AC017037.2-201ENST00000513850 890 ntBASIC3.09□□□□□ -1.91
LHX3Q9UBR4 AC090857.2-201ENST00000526362 723 ntTSL 2 BASIC3.09□□□□□ -1.91
LHX3Q9UBR4 HIGD1AP10-201ENST00000527837 282 ntBASIC3.09□□□□□ -1.91
LHX3Q9UBR4 OR6C7P-201ENST00000547875 934 ntBASIC3.09□□□□□ -1.91
LHX3Q9UBR4 LINC02294-201ENST00000549330 497 ntTSL 2 BASIC3.09□□□□□ -1.91
LHX3Q9UBR4 AC087286.1-201ENST00000560712 568 ntTSL 3 BASIC3.09□□□□□ -1.91
LHX3Q9UBR4 LINC01515-204ENST00000595269 402 ntTSL 5 BASIC3.09□□□□□ -1.91
LHX3Q9UBR4 AC106900.2-201ENST00000604994 317 ntBASIC3.09□□□□□ -1.91
LHX3Q9UBR4 AC007349.4-201ENST00000608114 532 ntBASIC3.09□□□□□ -1.91
LHX3Q9UBR4 AL590099.1-201ENST00000615276 138 ntBASIC3.09□□□□□ -1.91
LHX3Q9UBR4 ATP5A1P2-202ENST00000616464 443 ntBASIC3.09□□□□□ -1.91
LHX3Q9UBR4 PLCE1P1-201ENST00000622094 305 ntBASIC3.09□□□□□ -1.91
LHX3Q9UBR4 AC009951.2-201ENST00000634873 644 ntTSL 5 BASIC3.09□□□□□ -1.91
LHX3Q9UBR4 AC006927.4-201ENST00000639187 543 ntBASIC3.09□□□□□ -1.91
LHX3Q9UBR4 ATF2-221ENST00000538946 1325 ntTSL 5 BASIC3.09□□□□□ -1.91
LHX3Q9UBR4 AL355596.1-201ENST00000565399 3996 ntBASIC3.09□□□□□ -1.91
LHX3Q9UBR4 AC138915.3-201ENST00000562908 1389 ntBASIC3.09□□□□□ -1.92
LHX3Q9UBR4 LRRTM2-201ENST00000274711 6017 ntAPPRIS P1 TSL 1 (best) BASIC3.09□□□□□ -1.92
LHX3Q9UBR4 ZNF833P-201ENST00000424938 1494 ntBASIC3.09□□□□□ -1.92
LHX3Q9UBR4 PEX3-201ENST00000367591 1969 ntAPPRIS P1 TSL 1 (best) BASIC3.09□□□□□ -1.92
LHX3Q9UBR4 AC091152.2-201ENST00000591628 2569 ntBASIC3.08□□□□□ -1.92
LHX3Q9UBR4 SAMD9-201ENST00000379958 6852 ntAPPRIS P1 TSL 1 (best) BASIC3.08□□□□□ -1.92
LHX3Q9UBR4 BCLAF3-202ENST00000379682 3217 ntAPPRIS ALT2 TSL 5 BASIC3.08□□□□□ -1.92
LHX3Q9UBR4 CACNB4-222ENST00000636350 7654 ntTSL 5 BASIC3.08□□□□□ -1.92
LHX3Q9UBR4 PLPPR4-201ENST00000370184 4505 ntTSL 5 BASIC3.08□□□□□ -1.92
LHX3Q9UBR4 CPB2-201ENST00000181383 1717 ntAPPRIS P1 TSL 1 (best) BASIC3.08□□□□□ -1.92
LHX3Q9UBR4 KNL1-202ENST00000399668 7607 ntAPPRIS ALT2 TSL 1 (best) BASIC3.08□□□□□ -1.92
LHX3Q9UBR4 LINC00301-201ENST00000320202 852 ntTSL 2 BASIC3.08□□□□□ -1.92
LHX3Q9UBR4 RNU6-343P-201ENST00000364709 104 ntBASIC3.08□□□□□ -1.92
LHX3Q9UBR4 SNORA48.2-201ENST00000390926 124 ntBASIC3.08□□□□□ -1.92
LHX3Q9UBR4 SNORA48.5-201ENST00000391143 135 ntBASIC3.08□□□□□ -1.92
LHX3Q9UBR4 AL022329.2-201ENST00000413494 660 ntTSL 5 BASIC3.08□□□□□ -1.92
LHX3Q9UBR4 CCDC58P2-201ENST00000417131 366 ntBASIC3.08□□□□□ -1.92
LHX3Q9UBR4 UBE2D3P2-201ENST00000424409 445 ntBASIC3.08□□□□□ -1.92
LHX3Q9UBR4 AL078601.2-201ENST00000429444 474 ntTSL 2 BASIC3.08□□□□□ -1.92
LHX3Q9UBR4 ZMYM4-AS1-201ENST00000432683 459 ntTSL 2 BASIC3.08□□□□□ -1.92
LHX3Q9UBR4 LINC00353-201ENST00000435401 685 ntTSL 5 BASIC3.08□□□□□ -1.92
LHX3Q9UBR4 OR6K5P-201ENST00000447050 945 ntBASIC3.08□□□□□ -1.92
LHX3Q9UBR4 RSL24D1P3-201ENST00000449255 495 ntBASIC3.08□□□□□ -1.92
LHX3Q9UBR4 AC034195.1-202ENST00000451031 610 ntTSL 3 BASIC3.08□□□□□ -1.92
LHX3Q9UBR4 MEMO1P3-201ENST00000459811 302 ntBASIC3.08□□□□□ -1.92
LHX3Q9UBR4 PTPRG-AS1-202ENST00000466893 823 ntTSL 4 BASIC3.08□□□□□ -1.92
LHX3Q9UBR4 AC117440.1-201ENST00000474107 571 ntBASIC3.08□□□□□ -1.92
LHX3Q9UBR4 AC091212.1-201ENST00000474798 395 ntTSL 5 BASIC3.08□□□□□ -1.92
LHX3Q9UBR4 AC012181.1-201ENST00000479895 423 ntBASIC3.08□□□□□ -1.92
LHX3Q9UBR4 AL049830.2-201ENST00000480072 201 ntBASIC3.08□□□□□ -1.92
LHX3Q9UBR4 TAF8-207ENST00000482432 556 ntTSL 2 BASIC3.08□□□□□ -1.92
LHX3Q9UBR4 VN1R104P-201ENST00000505115 1009 ntBASIC3.08□□□□□ -1.92
LHX3Q9UBR4 NDST1-AS1-201ENST00000519040 368 ntTSL 2 BASIC3.08□□□□□ -1.92
LHX3Q9UBR4 COX6CP8-201ENST00000522620 226 ntBASIC3.08□□□□□ -1.92
LHX3Q9UBR4 AP001804.3-201ENST00000525146 880 ntBASIC3.08□□□□□ -1.92
LHX3Q9UBR4 AP003730.2-201ENST00000526385 546 ntTSL 3 BASIC3.08□□□□□ -1.92
LHX3Q9UBR4 AC023510.1-201ENST00000555862 490 ntTSL 2 BASIC3.08□□□□□ -1.92
LHX3Q9UBR4 AP005205.1-201ENST00000563503 508 ntBASIC3.08□□□□□ -1.92
LHX3Q9UBR4 AL031716.1-201ENST00000569106 530 ntTSL 5 BASIC3.08□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 81.9 ms