Protein–RNA interactions for Protein: Q9NVE4

CCDC87, Coiled-coil domain-containing protein 87, humanhuman

Predictions only

Length 849 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC87Q9NVE4 RNU6-178P-201ENST00000384631 104 ntBASIC5.8□□□□□ -1.48
CCDC87Q9NVE4 RNU6-516P-201ENST00000411381 104 ntBASIC5.8□□□□□ -1.48
CCDC87Q9NVE4 AC064875.1-202ENST00000421112 561 ntTSL 4 BASIC5.8□□□□□ -1.48
CCDC87Q9NVE4 AL132765.1-201ENST00000434165 553 ntBASIC5.8□□□□□ -1.48
CCDC87Q9NVE4 RPL23AP43-201ENST00000446445 471 ntBASIC5.8□□□□□ -1.48
CCDC87Q9NVE4 EIF4A1P11-201ENST00000451239 222 ntBASIC5.8□□□□□ -1.48
CCDC87Q9NVE4 AC002553.2-201ENST00000453217 340 ntBASIC5.8□□□□□ -1.48
CCDC87Q9NVE4 ISCUP1-201ENST00000454451 448 ntBASIC5.8□□□□□ -1.48
CCDC87Q9NVE4 Y_RNA.635-201ENST00000459041 101 ntBASIC5.8□□□□□ -1.48
CCDC87Q9NVE4 AC053481.1-201ENST00000467217 306 ntBASIC5.8□□□□□ -1.48
CCDC87Q9NVE4 PARP4P3-201ENST00000510265 317 ntBASIC5.8□□□□□ -1.48
CCDC87Q9NVE4 AC017037.2-201ENST00000513850 890 ntBASIC5.8□□□□□ -1.48
CCDC87Q9NVE4 FAM60DP-201ENST00000524174 632 ntBASIC5.8□□□□□ -1.48
CCDC87Q9NVE4 AP001825.1-201ENST00000534275 351 ntTSL 2 BASIC5.8□□□□□ -1.48
CCDC87Q9NVE4 AL133271.1-201ENST00000538229 291 ntBASIC5.8□□□□□ -1.48
CCDC87Q9NVE4 AC099518.4-202ENST00000576433 455 ntTSL 2 BASIC5.8□□□□□ -1.48
CCDC87Q9NVE4 LINC01909-202ENST00000584919 815 ntTSL 3 BASIC5.8□□□□□ -1.48
CCDC87Q9NVE4 AP001330.4-201ENST00000604350 154 ntBASIC5.8□□□□□ -1.48
CCDC87Q9NVE4 AL592436.1-201ENST00000605135 558 ntBASIC5.8□□□□□ -1.48
CCDC87Q9NVE4 AC103710.3-201ENST00000608157 948 ntBASIC5.8□□□□□ -1.48
CCDC87Q9NVE4 AC093838.1-201ENST00000613014 469 ntBASIC5.8□□□□□ -1.48
CCDC87Q9NVE4 SNX18P1Y-201ENST00000616231 511 ntBASIC5.8□□□□□ -1.48
CCDC87Q9NVE4 AP001005.3-201ENST00000622049 129 ntBASIC5.8□□□□□ -1.48
CCDC87Q9NVE4 NADK2-203ENST00000397338 3614 ntTSL 2 BASIC5.8□□□□□ -1.48
CCDC87Q9NVE4 STK31-201ENST00000354639 3596 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
CCDC87Q9NVE4 AL391684.1-202ENST00000641293 1636 ntBASIC5.8□□□□□ -1.48
CCDC87Q9NVE4 ZNF678-201ENST00000343776 8556 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
CCDC87Q9NVE4 AC107027.3-201ENST00000565095 3473 ntBASIC5.8□□□□□ -1.48
CCDC87Q9NVE4 DSE-204ENST00000452085 10586 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
CCDC87Q9NVE4 MED13-201ENST00000397786 10465 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
CCDC87Q9NVE4 ADGRF2-202ENST00000398742 4895 ntAPPRIS P1 TSL 5 BASIC5.79□□□□□ -1.48
CCDC87Q9NVE4 OR2AT4-203ENST00000641541 8795 ntAPPRIS P1 BASIC5.79□□□□□ -1.48
CCDC87Q9NVE4 CCDC169-204ENST00000379864 5944 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
CCDC87Q9NVE4 STARD9-201ENST00000290607 15567 ntAPPRIS P1 TSL 5 BASIC5.79□□□□□ -1.48
CCDC87Q9NVE4 HDAC9-204ENST00000406451 9705 ntAPPRIS ALT1 TSL 1 (best) BASIC5.79□□□□□ -1.48
CCDC87Q9NVE4 BDP1P-201ENST00000582658 1990 ntBASIC5.79□□□□□ -1.48
CCDC87Q9NVE4 SPRR2C-201ENST00000290702 219 ntBASIC5.79□□□□□ -1.48
CCDC87Q9NVE4 OR5P1P-201ENST00000299512 925 ntBASIC5.79□□□□□ -1.48
CCDC87Q9NVE4 MDM2-205ENST00000348801 798 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
CCDC87Q9NVE4 Y_RNA.301-201ENST00000364990 103 ntBASIC5.79□□□□□ -1.48
CCDC87Q9NVE4 SNORD42.2-201ENST00000365570 69 ntBASIC5.79□□□□□ -1.48
CCDC87Q9NVE4 RNU5E-6P-201ENST00000365574 115 ntBASIC5.79□□□□□ -1.48
CCDC87Q9NVE4 RNU6-43P-201ENST00000384302 107 ntBASIC5.79□□□□□ -1.48
CCDC87Q9NVE4 RNU6-738P-201ENST00000384531 106 ntBASIC5.79□□□□□ -1.48
CCDC87Q9NVE4 MIR559-201ENST00000385188 96 ntBASIC5.79□□□□□ -1.48
CCDC87Q9NVE4 MDM2-210ENST00000393413 657 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
CCDC87Q9NVE4 PPIAP31-201ENST00000405422 495 ntBASIC5.79□□□□□ -1.48
CCDC87Q9NVE4 RN7SKP202-201ENST00000410439 330 ntBASIC5.79□□□□□ -1.48
CCDC87Q9NVE4 LINC00375-201ENST00000433074 601 ntTSL 5 BASIC5.79□□□□□ -1.48
CCDC87Q9NVE4 BX276092.4-201ENST00000452056 248 ntBASIC5.79□□□□□ -1.48
CCDC87Q9NVE4 AC005008.1-201ENST00000456151 612 ntBASIC5.79□□□□□ -1.48
CCDC87Q9NVE4 Y_RNA.639-201ENST00000458981 102 ntBASIC5.79□□□□□ -1.48
CCDC87Q9NVE4 ALDH7A1P3-201ENST00000492517 345 ntBASIC5.79□□□□□ -1.48
CCDC87Q9NVE4 MTCO3P44-201ENST00000510977 541 ntBASIC5.79□□□□□ -1.48
CCDC87Q9NVE4 AC010255.3-204ENST00000514637 454 ntTSL 2 BASIC5.79□□□□□ -1.48
CCDC87Q9NVE4 RNU6-864P-201ENST00000516256 108 ntBASIC5.79□□□□□ -1.48
CCDC87Q9NVE4 RNA5SP230-201ENST00000517039 122 ntBASIC5.79□□□□□ -1.48
CCDC87Q9NVE4 TRMT10BP1-201ENST00000519377 943 ntBASIC5.79□□□□□ -1.48
CCDC87Q9NVE4 AC022790.1-201ENST00000522872 204 ntBASIC5.79□□□□□ -1.48
CCDC87Q9NVE4 AC087318.1-201ENST00000536786 389 ntTSL 3 BASIC5.79□□□□□ -1.48
CCDC87Q9NVE4 MDM2-233ENST00000545204 398 ntTSL 5 BASIC5.79□□□□□ -1.48
CCDC87Q9NVE4 AC073525.1-202ENST00000550049 732 ntTSL 3 BASIC5.79□□□□□ -1.48
CCDC87Q9NVE4 MIR4512-201ENST00000583257 77 ntBASIC5.79□□□□□ -1.48
CCDC87Q9NVE4 LINC00907-211ENST00000601948 795 ntTSL 5 BASIC5.79□□□□□ -1.48
CCDC87Q9NVE4 AC020634.1-201ENST00000608701 549 ntBASIC5.79□□□□□ -1.48
CCDC87Q9NVE4 AL512625.3-207ENST00000609749 477 ntTSL 3 BASIC5.79□□□□□ -1.48
CCDC87Q9NVE4 uc_338.34-201ENST00000617467 174 ntBASIC5.79□□□□□ -1.48
CCDC87Q9NVE4 HGF-201ENST00000222390 5989 ntAPPRIS P3 TSL 1 (best) BASIC5.79□□□□□ -1.48
CCDC87Q9NVE4 GABRA3-201ENST00000370314 3712 ntAPPRIS P1 TSL 1 (best) BASIC5.79□□□□□ -1.48
CCDC87Q9NVE4 CCNYL2-202ENST00000637719 3311 ntTSL 2 BASIC5.79□□□□□ -1.48
CCDC87Q9NVE4 STAG2-205ENST00000371160 6045 ntAPPRIS P3 TSL 1 (best) BASIC5.78□□□□□ -1.48
CCDC87Q9NVE4 TENM1-202ENST00000422452 12891 ntAPPRIS ALT1 TSL 1 (best) BASIC5.78□□□□□ -1.48
CCDC87Q9NVE4 ERBIN-208ENST00000506030 4386 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
CCDC87Q9NVE4 C3orf67-AS1-202ENST00000482372 2203 ntTSL 2 BASIC5.78□□□□□ -1.48
CCDC87Q9NVE4 XRN1-201ENST00000264951 10143 ntAPPRIS P3 TSL 1 (best) BASIC5.78□□□□□ -1.48
CCDC87Q9NVE4 DTNA-203ENST00000315456 1706 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
CCDC87Q9NVE4 RNU6-960P-201ENST00000364056 120 ntBASIC5.78□□□□□ -1.48
CCDC87Q9NVE4 SNORA62.3-201ENST00000365110 153 ntBASIC5.78□□□□□ -1.48
CCDC87Q9NVE4 CARD16-202ENST00000375706 686 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
CCDC87Q9NVE4 RNU6-432P-201ENST00000384196 109 ntBASIC5.78□□□□□ -1.48
CCDC87Q9NVE4 MIR606-201ENST00000384851 96 ntBASIC5.78□□□□□ -1.48
CCDC87Q9NVE4 Y_RNA.579-201ENST00000390939 94 ntBASIC5.78□□□□□ -1.48
CCDC87Q9NVE4 RNU6-754P-201ENST00000391166 107 ntBASIC5.78□□□□□ -1.48
CCDC87Q9NVE4 AL117381.1-201ENST00000412972 374 ntTSL 3 BASIC5.78□□□□□ -1.48
CCDC87Q9NVE4 AC007738.1-201ENST00000413892 348 ntBASIC5.78□□□□□ -1.48
CCDC87Q9NVE4 PPIAP3-201ENST00000450588 505 ntBASIC5.78□□□□□ -1.48
CCDC87Q9NVE4 AL118520.1-201ENST00000450770 291 ntBASIC5.78□□□□□ -1.48
CCDC87Q9NVE4 AL109763.1-201ENST00000455391 461 ntTSL 2 BASIC5.78□□□□□ -1.48
CCDC87Q9NVE4 AC123023.1-201ENST00000455974 555 ntTSL 4 BASIC5.78□□□□□ -1.48
CCDC87Q9NVE4 AC005538.1-201ENST00000455991 594 ntTSL 3 BASIC5.78□□□□□ -1.48
CCDC87Q9NVE4 MRPL36-203ENST00000505818 595 ntAPPRIS P1 TSL 3 BASIC5.78□□□□□ -1.48
CCDC87Q9NVE4 RNU6-559P-201ENST00000516151 98 ntBASIC5.78□□□□□ -1.48
CCDC87Q9NVE4 AC027018.1-202ENST00000534723 383 ntTSL 3 BASIC5.78□□□□□ -1.48
CCDC87Q9NVE4 AC007513.1-201ENST00000548740 379 ntTSL 3 BASIC5.78□□□□□ -1.48
CCDC87Q9NVE4 FRG2DP-202ENST00000566967 323 ntBASIC5.78□□□□□ -1.48
CCDC87Q9NVE4 MIR3171-201ENST00000584270 74 ntBASIC5.78□□□□□ -1.48
CCDC87Q9NVE4 AC016866.2-201ENST00000585251 502 ntTSL 2 BASIC5.78□□□□□ -1.48
CCDC87Q9NVE4 AL355802.3-201ENST00000607571 545 ntBASIC5.78□□□□□ -1.48
CCDC87Q9NVE4 AC007405.1-203ENST00000623667 932 ntTSL 5 BASIC5.78□□□□□ -1.48
CCDC87Q9NVE4 AL133216.2-202ENST00000634512 349 ntBASIC5.78□□□□□ -1.48
Retrieved 100 of 98,524 protein–RNA pairs in 82.5 ms