Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 AF241725.1-201ENST00000416182 480 ntTSL 3 BASIC4.63□□□□□ -1.67
TRIM39Q9HCM9 AC073521.1-201ENST00000418679 625 ntTSL 3 BASIC4.63□□□□□ -1.67
TRIM39Q9HCM9 ARL5AP1-201ENST00000418991 388 ntBASIC4.63□□□□□ -1.67
TRIM39Q9HCM9 AL500522.1-201ENST00000423667 318 ntTSL 3 BASIC4.63□□□□□ -1.67
TRIM39Q9HCM9 SRIP2-201ENST00000428470 166 ntBASIC4.63□□□□□ -1.67
TRIM39Q9HCM9 FABP7P2-201ENST00000429946 379 ntBASIC4.63□□□□□ -1.67
TRIM39Q9HCM9 AL162386.2-201ENST00000442428 457 ntTSL 3 BASIC4.63□□□□□ -1.67
TRIM39Q9HCM9 RPL21P133-201ENST00000443666 476 ntBASIC4.63□□□□□ -1.67
TRIM39Q9HCM9 AL161621.1-201ENST00000444796 340 ntTSL 3 BASIC4.63□□□□□ -1.67
TRIM39Q9HCM9 RPL7P12-201ENST00000446719 750 ntBASIC4.63□□□□□ -1.67
TRIM39Q9HCM9 IGKV1OR-3-201ENST00000446944 348 ntBASIC4.63□□□□□ -1.67
TRIM39Q9HCM9 SNRPFP3-201ENST00000457792 225 ntBASIC4.63□□□□□ -1.67
TRIM39Q9HCM9 RPL12P20-201ENST00000475538 479 ntBASIC4.63□□□□□ -1.67
TRIM39Q9HCM9 AC108078.2-201ENST00000510750 236 ntBASIC4.63□□□□□ -1.67
TRIM39Q9HCM9 LINCR-0001-203ENST00000524047 545 ntTSL 4 BASIC4.63□□□□□ -1.67
TRIM39Q9HCM9 AC022690.1-201ENST00000526681 550 ntBASIC4.63□□□□□ -1.67
TRIM39Q9HCM9 AC103843.2-201ENST00000530523 682 ntBASIC4.63□□□□□ -1.67
TRIM39Q9HCM9 OR5B19P-201ENST00000531766 928 ntBASIC4.63□□□□□ -1.67
TRIM39Q9HCM9 AL121821.1-201ENST00000557067 530 ntTSL 3 BASIC4.63□□□□□ -1.67
TRIM39Q9HCM9 AL138976.2-201ENST00000563989 694 ntBASIC4.63□□□□□ -1.67
TRIM39Q9HCM9 RN7SL176P-201ENST00000580352 264 ntBASIC4.63□□□□□ -1.67
TRIM39Q9HCM9 LINC00907-211ENST00000601948 795 ntTSL 5 BASIC4.63□□□□□ -1.67
TRIM39Q9HCM9 SDR42E1P2-201ENST00000614861 481 ntBASIC4.63□□□□□ -1.67
TRIM39Q9HCM9 LINC00901.1-201ENST00000617252 152 ntBASIC4.63□□□□□ -1.67
TRIM39Q9HCM9 AC092683.2-201ENST00000619740 621 ntTSL 3 BASIC4.63□□□□□ -1.67
TRIM39Q9HCM9 FMN2-207ENST00000545751 1913 ntTSL 5 BASIC4.63□□□□□ -1.67
TRIM39Q9HCM9 TAB3P1-202ENST00000452645 1634 ntBASIC4.63□□□□□ -1.67
TRIM39Q9HCM9 ZCCHC7-202ENST00000336755 2619 ntAPPRIS P1 TSL 2 BASIC4.63□□□□□ -1.67
TRIM39Q9HCM9 AL589740.1-207ENST00000607823 1962 ntTSL 5 BASIC4.63□□□□□ -1.67
TRIM39Q9HCM9 CLCA1-201ENST00000234701 3310 ntAPPRIS P1 TSL 1 (best) BASIC4.63□□□□□ -1.67
TRIM39Q9HCM9 IQGAP2-204ENST00000502745 3404 ntTSL 2 BASIC4.63□□□□□ -1.67
TRIM39Q9HCM9 NUTM2B-AS1-213ENST00000619625 7611 ntTSL 2 BASIC4.63□□□□□ -1.67
TRIM39Q9HCM9 LINC02389-201ENST00000535058 3546 ntTSL 2 BASIC4.63□□□□□ -1.67
TRIM39Q9HCM9 OR10D3-202ENST00000641351 3561 ntAPPRIS P1 BASIC4.63□□□□□ -1.67
TRIM39Q9HCM9 ZFHX4-207ENST00000521891 14019 ntAPPRIS P2 TSL 5 BASIC4.63□□□□□ -1.67
TRIM39Q9HCM9 API5P2-201ENST00000397055 1498 ntBASIC4.62□□□□□ -1.67
TRIM39Q9HCM9 A2MP1-204ENST00000566278 4130 ntBASIC4.62□□□□□ -1.67
TRIM39Q9HCM9 PCDH11X-207ENST00000406881 4156 ntAPPRIS ALT2 TSL 1 (best) BASIC4.62□□□□□ -1.67
TRIM39Q9HCM9 RNF128-202ENST00000324342 2654 ntTSL 1 (best) BASIC4.62□□□□□ -1.67
TRIM39Q9HCM9 AC092326.2-201ENST00000624772 1561 ntBASIC4.62□□□□□ -1.67
TRIM39Q9HCM9 ZNF28-204ENST00000457749 4556 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
TRIM39Q9HCM9 AL139276.1-201ENST00000311910 1001 ntBASIC4.62□□□□□ -1.67
TRIM39Q9HCM9 RNU6-845P-201ENST00000362578 103 ntBASIC4.62□□□□□ -1.67
TRIM39Q9HCM9 Y_RNA.61-201ENST00000362835 102 ntBASIC4.62□□□□□ -1.67
TRIM39Q9HCM9 Y_RNA.231-201ENST00000364358 102 ntBASIC4.62□□□□□ -1.67
TRIM39Q9HCM9 RNU6-335P-201ENST00000364563 113 ntBASIC4.62□□□□□ -1.67
TRIM39Q9HCM9 RNU6-76P-201ENST00000384060 104 ntBASIC4.62□□□□□ -1.67
TRIM39Q9HCM9 SNORA24.1-201ENST00000384401 135 ntBASIC4.62□□□□□ -1.67
TRIM39Q9HCM9 MIR192-201ENST00000384915 110 ntBASIC4.62□□□□□ -1.67
TRIM39Q9HCM9 TRAJ35-201ENST00000390502 59 ntAPPRIS P1 BASIC4.62□□□□□ -1.67
TRIM39Q9HCM9 RNU6-332P-201ENST00000391193 108 ntBASIC4.62□□□□□ -1.67
TRIM39Q9HCM9 TNFRSF17-202ENST00000396495 668 ntAPPRIS ALT2 TSL 1 (best) BASIC4.62□□□□□ -1.67
TRIM39Q9HCM9 AC133106.1-201ENST00000419029 397 ntTSL 3 BASIC4.62□□□□□ -1.67
TRIM39Q9HCM9 AC079790.1-201ENST00000420365 507 ntTSL 3 BASIC4.62□□□□□ -1.67
TRIM39Q9HCM9 LINC02526-201ENST00000424162 419 ntTSL 2 BASIC4.62□□□□□ -1.67
TRIM39Q9HCM9 LINC00844-201ENST00000432535 477 ntTSL 2 BASIC4.62□□□□□ -1.67
TRIM39Q9HCM9 ERLEC1P1-201ENST00000433806 578 ntBASIC4.62□□□□□ -1.67
TRIM39Q9HCM9 AC012442.1-201ENST00000436885 529 ntTSL 4 BASIC4.62□□□□□ -1.67
TRIM39Q9HCM9 SPIN4-AS1-201ENST00000451979 426 ntTSL 2 BASIC4.62□□□□□ -1.67
TRIM39Q9HCM9 AC092264.1-201ENST00000456002 713 ntTSL 5 BASIC4.62□□□□□ -1.67
TRIM39Q9HCM9 AC020890.1-201ENST00000491837 504 ntBASIC4.62□□□□□ -1.67
TRIM39Q9HCM9 LINC02447-203ENST00000504402 292 ntTSL 3 BASIC4.62□□□□□ -1.67
TRIM39Q9HCM9 MLLT10P2-201ENST00000506434 249 ntBASIC4.62□□□□□ -1.67
TRIM39Q9HCM9 MDM4-213ENST00000507825 481 ntTSL 1 (best) BASIC4.62□□□□□ -1.67
TRIM39Q9HCM9 AC004062.1-201ENST00000509926 645 ntBASIC4.62□□□□□ -1.67
TRIM39Q9HCM9 GMPSP1-201ENST00000514075 579 ntBASIC4.62□□□□□ -1.67
TRIM39Q9HCM9 AF117829.1-204ENST00000519854 284 ntTSL 3 BASIC4.62□□□□□ -1.67
TRIM39Q9HCM9 AC022915.1-201ENST00000521660 289 ntTSL 3 BASIC4.62□□□□□ -1.67
TRIM39Q9HCM9 RANP3-201ENST00000530970 276 ntBASIC4.62□□□□□ -1.67
TRIM39Q9HCM9 DERA-209ENST00000532964 854 ntTSL 5 BASIC4.62□□□□□ -1.67
TRIM39Q9HCM9 AC243972.3-201ENST00000539655 198 ntBASIC4.62□□□□□ -1.67
TRIM39Q9HCM9 AC118757.1-201ENST00000586982 453 ntTSL 2 BASIC4.62□□□□□ -1.67
TRIM39Q9HCM9 MIR99AHG-211ENST00000602323 475 ntTSL 5 BASIC4.62□□□□□ -1.67
TRIM39Q9HCM9 AC243585.1-201ENST00000617867 607 ntTSL 3 BASIC4.62□□□□□ -1.67
TRIM39Q9HCM9 AC015967.1-201ENST00000619893 476 ntBASIC4.62□□□□□ -1.67
TRIM39Q9HCM9 AC010338.1-201ENST00000621823 717 ntBASIC4.62□□□□□ -1.67
TRIM39Q9HCM9 AC007998.5-201ENST00000622938 237 ntBASIC4.62□□□□□ -1.67
TRIM39Q9HCM9 EMCN-201ENST00000296420 4037 ntAPPRIS P3 TSL 1 (best) BASIC4.62□□□□□ -1.67
TRIM39Q9HCM9 ABCA12-201ENST00000272895 9100 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
TRIM39Q9HCM9 ZNF137P-201ENST00000456718 1920 ntBASIC4.62□□□□□ -1.67
TRIM39Q9HCM9 CENPE-208ENST00000611174 8260 ntTSL 5 BASIC4.62□□□□□ -1.67
TRIM39Q9HCM9 DCDC1-211ENST00000597505 5352 ntAPPRIS ALT2 TSL 5 BASIC4.62□□□□□ -1.67
TRIM39Q9HCM9 MALRD1-204ENST00000454679 6880 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
TRIM39Q9HCM9 RASA1-203ENST00000506290 3009 ntAPPRIS ALT2 TSL 2 BASIC4.62□□□□□ -1.67
TRIM39Q9HCM9 FAP-214ENST00000627638 2569 ntAPPRIS ALT1 TSL 5 BASIC4.61□□□□□ -1.67
TRIM39Q9HCM9 SPAG5-AS1-202ENST00000424210 1551 ntTSL 2 BASIC4.61□□□□□ -1.67
TRIM39Q9HCM9 SLAIN2-205ENST00000512093 4219 ntTSL 5 BASIC4.61□□□□□ -1.67
TRIM39Q9HCM9 RGS5-201ENST00000313961 5862 ntAPPRIS P3 TSL 1 (best) BASIC4.61□□□□□ -1.67
TRIM39Q9HCM9 AGBL2-201ENST00000357610 3295 ntAPPRIS ALT2 TSL 5 BASIC4.61□□□□□ -1.67
TRIM39Q9HCM9 FAM107B-229ENST00000622567 3510 ntAPPRIS P1 TSL 2 BASIC4.61□□□□□ -1.67
TRIM39Q9HCM9 TPTE2-205ENST00000400230 1793 ntAPPRIS P1 TSL 5 BASIC4.61□□□□□ -1.67
TRIM39Q9HCM9 ELAVL2-202ENST00000380110 3691 ntTSL 5 BASIC4.61□□□□□ -1.67
TRIM39Q9HCM9 OR13G1-201ENST00000359688 1046 ntAPPRIS P1 BASIC4.61□□□□□ -1.67
TRIM39Q9HCM9 UTS2-202ENST00000361696 559 ntAPPRIS ALT2 TSL 1 (best) BASIC4.61□□□□□ -1.67
TRIM39Q9HCM9 Y_RNA.142-201ENST00000363491 102 ntBASIC4.61□□□□□ -1.67
TRIM39Q9HCM9 RNA5SP235-201ENST00000365411 114 ntBASIC4.61□□□□□ -1.67
TRIM39Q9HCM9 CARD16-202ENST00000375706 686 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
TRIM39Q9HCM9 SNORA70F-201ENST00000384142 135 ntBASIC4.61□□□□□ -1.67
TRIM39Q9HCM9 RNU6-510P-201ENST00000391239 108 ntBASIC4.61□□□□□ -1.67
TRIM39Q9HCM9 RNA5SP397-201ENST00000391323 118 ntBASIC4.61□□□□□ -1.67
Retrieved 100 of 98,524 protein–RNA pairs in 77.9 ms