Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 MIR423-201ENST00000362201 94 ntBASIC3.36□□□□□ -1.87
CCDC3Q9BQI4 Y_RNA.169-201ENST00000363745 96 ntBASIC3.36□□□□□ -1.87
CCDC3Q9BQI4 PARD3-204ENST00000374768 799 ntTSL 3 BASIC3.36□□□□□ -1.87
CCDC3Q9BQI4 MIR128-1-201ENST00000384921 82 ntBASIC3.36□□□□□ -1.87
CCDC3Q9BQI4 MIR320C1-201ENST00000408566 88 ntBASIC3.36□□□□□ -1.87
CCDC3Q9BQI4 RNU6-712P-201ENST00000410558 100 ntBASIC3.36□□□□□ -1.87
CCDC3Q9BQI4 AL354733.1-203ENST00000417672 495 ntTSL 5 BASIC3.36□□□□□ -1.87
CCDC3Q9BQI4 USP9YP26-201ENST00000421008 661 ntBASIC3.36□□□□□ -1.87
CCDC3Q9BQI4 EDNRB-AS1-201ENST00000422405 601 ntTSL 5 BASIC3.36□□□□□ -1.87
CCDC3Q9BQI4 ARF4P2-201ENST00000430209 526 ntBASIC3.36□□□□□ -1.87
CCDC3Q9BQI4 AC017048.2-201ENST00000431455 822 ntTSL 3 BASIC3.36□□□□□ -1.87
CCDC3Q9BQI4 REG1CP-203ENST00000434852 460 ntTSL 4 BASIC3.36□□□□□ -1.87
CCDC3Q9BQI4 SKP1P1-201ENST00000438081 489 ntBASIC3.36□□□□□ -1.87
CCDC3Q9BQI4 MTATP6P26-201ENST00000445926 662 ntBASIC3.36□□□□□ -1.87
CCDC3Q9BQI4 MYCBP2-AS1-202ENST00000448470 333 ntTSL 3 BASIC3.36□□□□□ -1.87
CCDC3Q9BQI4 RPL7P52-201ENST00000449200 742 ntBASIC3.36□□□□□ -1.87
CCDC3Q9BQI4 MTND1P9-201ENST00000453775 944 ntBASIC3.36□□□□□ -1.87
CCDC3Q9BQI4 SNORD121B-201ENST00000458838 81 ntBASIC3.36□□□□□ -1.87
CCDC3Q9BQI4 snoU13.8-201ENST00000458890 104 ntBASIC3.36□□□□□ -1.87
CCDC3Q9BQI4 RN7SL594P-201ENST00000470590 287 ntBASIC3.36□□□□□ -1.87
CCDC3Q9BQI4 TIPARP-AS1-202ENST00000478005 554 ntTSL 4 BASIC3.36□□□□□ -1.87
CCDC3Q9BQI4 AC023424.2-201ENST00000493479 777 ntBASIC3.36□□□□□ -1.87
CCDC3Q9BQI4 LINC02469-201ENST00000506460 741 ntTSL 3 BASIC3.36□□□□□ -1.87
CCDC3Q9BQI4 AC022118.1-201ENST00000512352 547 ntTSL 5 BASIC3.36□□□□□ -1.87
CCDC3Q9BQI4 AC098868.1-201ENST00000512628 624 ntTSL 2 BASIC3.36□□□□□ -1.87
CCDC3Q9BQI4 AC079160.1-201ENST00000513489 739 ntTSL 1 (best) BASIC3.36□□□□□ -1.87
CCDC3Q9BQI4 OCIAD1-AS1-201ENST00000513576 265 ntTSL 3 BASIC3.36□□□□□ -1.87
CCDC3Q9BQI4 AC118465.1-201ENST00000513820 1271 ntBASIC3.36□□□□□ -1.87
CCDC3Q9BQI4 CRISPLD1-205ENST00000523524 2100 ntTSL 2 BASIC3.36□□□□□ -1.87
CCDC3Q9BQI4 AC055720.1-201ENST00000539552 475 ntTSL 5 BASIC3.36□□□□□ -1.87
CCDC3Q9BQI4 LINC02460-201ENST00000543558 536 ntTSL 4 BASIC3.36□□□□□ -1.87
CCDC3Q9BQI4 LINC00640-203ENST00000556479 576 ntTSL 2 BASIC3.36□□□□□ -1.87
CCDC3Q9BQI4 ALDH3A2-208ENST00000571163 590 ntTSL 5 BASIC3.36□□□□□ -1.87
CCDC3Q9BQI4 AC141257.3-201ENST00000572906 215 ntBASIC3.36□□□□□ -1.87
CCDC3Q9BQI4 MIR7515HG-213ENST00000585872 758 ntTSL 5 BASIC3.36□□□□□ -1.87
CCDC3Q9BQI4 AD001527.1-201ENST00000604228 379 ntTSL 5 BASIC3.36□□□□□ -1.87
CCDC3Q9BQI4 AC106028.5-201ENST00000610332 395 ntBASIC3.36□□□□□ -1.87
CCDC3Q9BQI4 MIR7112-201ENST00000616126 65 ntBASIC3.36□□□□□ -1.87
CCDC3Q9BQI4 NCRUPAR_2.1-201ENST00000616308 99 ntBASIC3.36□□□□□ -1.87
CCDC3Q9BQI4 MIR8057-201ENST00000620957 69 ntBASIC3.36□□□□□ -1.87
CCDC3Q9BQI4 AC009039.2-201ENST00000624524 529 ntBASIC3.36□□□□□ -1.87
CCDC3Q9BQI4 SOX2-OT-255ENST00000630150 649 ntTSL 5 BASIC3.36□□□□□ -1.87
CCDC3Q9BQI4 U6.98-201ENST00000637157 84 ntBASIC3.36□□□□□ -1.87
CCDC3Q9BQI4 C20orf24-208ENST00000639924 351 ntTSL 5 BASIC3.36□□□□□ -1.87
CCDC3Q9BQI4 AC004925.1-201ENST00000624256 2706 ntBASIC3.36□□□□□ -1.87
CCDC3Q9BQI4 AF127577.6-201ENST00000623352 2191 ntBASIC3.36□□□□□ -1.87
CCDC3Q9BQI4 MUC7-203ENST00000456088 2479 ntAPPRIS P2 TSL 4 BASIC3.36□□□□□ -1.87
CCDC3Q9BQI4 MCF2-203ENST00000370576 3688 ntAPPRIS P3 TSL 1 (best) BASIC3.36□□□□□ -1.87
CCDC3Q9BQI4 GPRC6A-201ENST00000310357 2860 ntAPPRIS P1 TSL 1 (best) BASIC3.36□□□□□ -1.87
CCDC3Q9BQI4 MFF-206ENST00000392059 1710 ntTSL 5 BASIC3.36□□□□□ -1.87
CCDC3Q9BQI4 ADAM29-211ENST00000514159 3010 ntAPPRIS P1 TSL 4 BASIC3.36□□□□□ -1.87
CCDC3Q9BQI4 POLK-204ENST00000504026 1484 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
CCDC3Q9BQI4 STAU2-207ENST00000519961 3928 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
CCDC3Q9BQI4 GABRG2-221ENST00000639683 3600 ntTSL 5 BASIC3.35□□□□□ -1.87
CCDC3Q9BQI4 FAM35DP-201ENST00000323387 2712 ntBASIC3.35□□□□□ -1.87
CCDC3Q9BQI4 KRTAP15-1-201ENST00000334067 671 ntAPPRIS P1 BASIC3.35□□□□□ -1.87
CCDC3Q9BQI4 RNY4P24-201ENST00000362735 96 ntBASIC3.35□□□□□ -1.87
CCDC3Q9BQI4 Y_RNA.234-201ENST00000364409 97 ntBASIC3.35□□□□□ -1.87
CCDC3Q9BQI4 MIR634-201ENST00000385208 97 ntBASIC3.35□□□□□ -1.87
CCDC3Q9BQI4 MIR607-201ENST00000385241 96 ntBASIC3.35□□□□□ -1.87
CCDC3Q9BQI4 AC096664.2-201ENST00000411843 406 ntBASIC3.35□□□□□ -1.87
CCDC3Q9BQI4 MYO16-AS2-201ENST00000412809 436 ntTSL 3 BASIC3.35□□□□□ -1.87
CCDC3Q9BQI4 RAD23BP2-201ENST00000416003 1207 ntBASIC3.35□□□□□ -1.87
CCDC3Q9BQI4 MTCO3P12-201ENST00000416718 547 ntBASIC3.35□□□□□ -1.87
CCDC3Q9BQI4 MTCYBP45-201ENST00000435243 565 ntBASIC3.35□□□□□ -1.87
CCDC3Q9BQI4 SETP8-201ENST00000435341 628 ntBASIC3.35□□□□□ -1.87
CCDC3Q9BQI4 RSU1P2-202ENST00000437884 485 ntBASIC3.35□□□□□ -1.87
CCDC3Q9BQI4 AC091862.1-201ENST00000438016 1100 ntBASIC3.35□□□□□ -1.87
CCDC3Q9BQI4 Z82190.1-201ENST00000454534 490 ntBASIC3.35□□□□□ -1.87
CCDC3Q9BQI4 AC012081.1-201ENST00000462382 477 ntTSL 3 BASIC3.35□□□□□ -1.87
CCDC3Q9BQI4 MIR1302-2HG-201ENST00000469289 535 ntTSL 5 BASIC3.35□□□□□ -1.87
CCDC3Q9BQI4 UBA6-AS1-204ENST00000502758 547 ntTSL 4 BASIC3.35□□□□□ -1.87
CCDC3Q9BQI4 MDM4-213ENST00000507825 481 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
CCDC3Q9BQI4 AC010486.3-201ENST00000511602 785 ntBASIC3.35□□□□□ -1.87
CCDC3Q9BQI4 AC092436.2-201ENST00000515188 411 ntTSL 2 BASIC3.35□□□□□ -1.87
CCDC3Q9BQI4 RN7SKP244-201ENST00000516513 307 ntBASIC3.35□□□□□ -1.87
CCDC3Q9BQI4 Y_RNA.688-201ENST00000516565 95 ntBASIC3.35□□□□□ -1.87
CCDC3Q9BQI4 AC024224.1-201ENST00000538284 609 ntBASIC3.35□□□□□ -1.87
CCDC3Q9BQI4 MIR5047-201ENST00000579212 100 ntBASIC3.35□□□□□ -1.87
CCDC3Q9BQI4 AC012493.2-201ENST00000595083 291 ntBASIC3.35□□□□□ -1.87
CCDC3Q9BQI4 AC006557.5-201ENST00000603126 811 ntBASIC3.35□□□□□ -1.87
CCDC3Q9BQI4 AC121247.2-201ENST00000604776 136 ntBASIC3.35□□□□□ -1.87
CCDC3Q9BQI4 YPEL5P2-201ENST00000605553 359 ntBASIC3.35□□□□□ -1.87
CCDC3Q9BQI4 AC004908.3-201ENST00000610248 625 ntBASIC3.35□□□□□ -1.87
CCDC3Q9BQI4 LINC00976-201ENST00000625513 783 ntTSL 3 BASIC3.35□□□□□ -1.87
CCDC3Q9BQI4 SATB1-AS1-226ENST00000625515 776 ntTSL 5 BASIC3.35□□□□□ -1.87
CCDC3Q9BQI4 CGA-204ENST00000627148 1010 ntAPPRIS P1 TSL 1 (best) BASIC3.35□□□□□ -1.87
CCDC3Q9BQI4 CRYM-AS1-204ENST00000637983 556 ntBASIC3.35□□□□□ -1.87
CCDC3Q9BQI4 KNTC1-204ENST00000436959 2412 ntTSL 2 BASIC3.35□□□□□ -1.87
CCDC3Q9BQI4 RICTOR-201ENST00000296782 7505 ntTSL 1 (best) BASIC3.34□□□□□ -1.87
CCDC3Q9BQI4 VPS13C-203ENST00000395896 14579 ntAPPRIS ALT2 TSL 1 (best) BASIC3.34□□□□□ -1.87
CCDC3Q9BQI4 MCF2-202ENST00000370573 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC3.34□□□□□ -1.87
CCDC3Q9BQI4 NBPF20-201ENST00000369373 18760 ntAPPRIS ALT2 TSL 5 BASIC3.34□□□□□ -1.87
CCDC3Q9BQI4 SYCP2-201ENST00000357552 5567 ntAPPRIS P2 TSL 1 (best) BASIC3.34□□□□□ -1.87
CCDC3Q9BQI4 TNPO1P3-201ENST00000436471 2662 ntBASIC3.34□□□□□ -1.87
CCDC3Q9BQI4 PIK3C2G-201ENST00000266497 4764 ntAPPRIS P1 TSL 1 (best) BASIC3.34□□□□□ -1.87
CCDC3Q9BQI4 IL2-201ENST00000226730 1029 ntAPPRIS P1 TSL 1 (best) BASIC3.34□□□□□ -1.87
CCDC3Q9BQI4 OR5I1-201ENST00000301532 945 ntAPPRIS P1 BASIC3.34□□□□□ -1.87
CCDC3Q9BQI4 RNU6-1155P-201ENST00000363554 107 ntBASIC3.34□□□□□ -1.87
CCDC3Q9BQI4 RNU6-777P-201ENST00000364265 104 ntBASIC3.34□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 95 ms