Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 RNA5SP276-201ENST00000362580 94 ntBASIC1.1□□□□□ -2.23
LINC00643Q86TS7 RN7SKP202-201ENST00000410439 330 ntBASIC1.1□□□□□ -2.23
LINC00643Q86TS7 LINC01709-201ENST00000415532 634 ntTSL 5 BASIC1.1□□□□□ -2.23
LINC00643Q86TS7 TXNDC8-204ENST00000423740 356 ntTSL 1 (best) BASIC1.1□□□□□ -2.23
LINC00643Q86TS7 MTCO3P46-201ENST00000425787 232 ntBASIC1.1□□□□□ -2.23
LINC00643Q86TS7 AC005300.1-201ENST00000428401 373 ntBASIC1.1□□□□□ -2.23
LINC00643Q86TS7 ENOX1-AS2-201ENST00000434273 609 ntTSL 3 BASIC1.1□□□□□ -2.23
LINC00643Q86TS7 AC091133.1-201ENST00000435491 483 ntTSL 3 BASIC1.1□□□□□ -2.23
LINC00643Q86TS7 AL772161.1-201ENST00000439130 476 ntBASIC1.1□□□□□ -2.23
LINC00643Q86TS7 MED6P1-201ENST00000439659 713 ntBASIC1.1□□□□□ -2.23
LINC00643Q86TS7 AP000477.2-201ENST00000447405 778 ntTSL 3 BASIC1.1□□□□□ -2.23
LINC00643Q86TS7 AC092422.1-201ENST00000455576 584 ntTSL 4 BASIC1.1□□□□□ -2.23
LINC00643Q86TS7 AC107626.1-201ENST00000471084 183 ntBASIC1.1□□□□□ -2.23
LINC00643Q86TS7 RCHY1-206ENST00000507014 650 ntTSL 3 BASIC1.1□□□□□ -2.23
LINC00643Q86TS7 CFAP100-207ENST00000510833 481 ntAPPRIS ALT2 TSL 3 BASIC1.1□□□□□ -2.23
LINC00643Q86TS7 AC097535.1-201ENST00000515263 332 ntTSL 3 BASIC1.1□□□□□ -2.23
LINC00643Q86TS7 EEF1A1P37-201ENST00000522748 715 ntBASIC1.1□□□□□ -2.23
LINC00643Q86TS7 DEUP1-203ENST00000527307 767 ntTSL 3 BASIC1.1□□□□□ -2.23
LINC00643Q86TS7 AP002884.4-201ENST00000527589 594 ntTSL 3 BASIC1.1□□□□□ -2.23
LINC00643Q86TS7 AL133279.1-201ENST00000553487 473 ntTSL 3 BASIC1.1□□□□□ -2.23
LINC00643Q86TS7 MMP2-AS1-201ENST00000565307 593 ntTSL 4 BASIC1.1□□□□□ -2.23
LINC00643Q86TS7 LINC01899-201ENST00000580323 312 ntTSL 5 BASIC1.1□□□□□ -2.23
LINC00643Q86TS7 MIR3200-201ENST00000580767 85 ntBASIC1.1□□□□□ -2.23
LINC00643Q86TS7 AP005671.1-201ENST00000581798 463 ntTSL 3 BASIC1.1□□□□□ -2.23
LINC00643Q86TS7 AC068790.4-201ENST00000602474 263 ntBASIC1.1□□□□□ -2.23
LINC00643Q86TS7 AC012213.4-201ENST00000606457 354 ntBASIC1.1□□□□□ -2.23
LINC00643Q86TS7 AL161782.1-201ENST00000622930 586 ntTSL 3 BASIC1.1□□□□□ -2.23
LINC00643Q86TS7 OR8K3-202ENST00000623845 939 ntAPPRIS P1 BASIC1.1□□□□□ -2.23
LINC00643Q86TS7 CFHR4-204ENST00000608469 1601 ntTSL 1 (best) BASIC1.1□□□□□ -2.23
LINC00643Q86TS7 HSFY1P1-202ENST00000425038 1381 ntTSL 1 (best) BASIC1.09□□□□□ -2.23
LINC00643Q86TS7 AC130650.2-201ENST00000618736 2403 ntBASIC1.09□□□□□ -2.23
LINC00643Q86TS7 IGSF11-AS1-201ENST00000477009 1604 ntTSL 2 BASIC1.09□□□□□ -2.23
LINC00643Q86TS7 KLRC4-201ENST00000309384 930 ntAPPRIS P1 TSL 1 (best) BASIC1.09□□□□□ -2.23
LINC00643Q86TS7 MIR422A-201ENST00000362286 90 ntBASIC1.09□□□□□ -2.23
LINC00643Q86TS7 MIR126-201ENST00000362291 85 ntBASIC1.09□□□□□ -2.23
LINC00643Q86TS7 UBA52P6-201ENST00000399822 382 ntBASIC1.09□□□□□ -2.23
LINC00643Q86TS7 SFR1P1-201ENST00000403720 688 ntBASIC1.09□□□□□ -2.23
LINC00643Q86TS7 USP9YP6-201ENST00000413550 854 ntBASIC1.09□□□□□ -2.23
LINC00643Q86TS7 VN1R36P-201ENST00000414936 291 ntBASIC1.09□□□□□ -2.23
LINC00643Q86TS7 RPL26P29-201ENST00000415623 438 ntBASIC1.09□□□□□ -2.23
LINC00643Q86TS7 CBLL1-202ENST00000415884 804 ntTSL 5 BASIC1.09□□□□□ -2.23
LINC00643Q86TS7 LINC02559-201ENST00000420391 188 ntTSL 2 BASIC1.09□□□□□ -2.23
LINC00643Q86TS7 PTP4A1P7-201ENST00000423476 514 ntBASIC1.09□□□□□ -2.23
LINC00643Q86TS7 AC005326.1-201ENST00000429197 123 ntBASIC1.09□□□□□ -2.23
LINC00643Q86TS7 HMGB1P48-201ENST00000446155 598 ntBASIC1.09□□□□□ -2.23
LINC00643Q86TS7 AP000936.2-201ENST00000447151 681 ntBASIC1.09□□□□□ -2.23
LINC00643Q86TS7 LINC01768-201ENST00000453347 476 ntTSL 3 BASIC1.09□□□□□ -2.23
LINC00643Q86TS7 AL109763.1-201ENST00000455391 461 ntTSL 2 BASIC1.09□□□□□ -2.23
LINC00643Q86TS7 MLLT10P2-201ENST00000506434 249 ntBASIC1.09□□□□□ -2.23
LINC00643Q86TS7 AC010445.1-201ENST00000507674 440 ntTSL 5 BASIC1.09□□□□□ -2.23
LINC00643Q86TS7 PRELID3BP4-201ENST00000515476 571 ntBASIC1.09□□□□□ -2.23
LINC00643Q86TS7 AC026403.1-201ENST00000518938 295 ntBASIC1.09□□□□□ -2.23
LINC00643Q86TS7 IGLVVI-22-1-201ENST00000521183 211 ntBASIC1.09□□□□□ -2.23
LINC00643Q86TS7 AP004607.1-201ENST00000524456 203 ntBASIC1.09□□□□□ -2.23
LINC00643Q86TS7 KLRC2-204ENST00000536833 771 ntTSL 5 BASIC1.09□□□□□ -2.23
LINC00643Q86TS7 ARL2BPP2-201ENST00000550907 489 ntBASIC1.09□□□□□ -2.23
LINC00643Q86TS7 LINC02126-202ENST00000563754 750 ntTSL 1 (best) BASIC1.09□□□□□ -2.23
LINC00643Q86TS7 MIR4529-201ENST00000578110 78 ntBASIC1.09□□□□□ -2.23
LINC00643Q86TS7 OR4G1P-201ENST00000588632 938 ntBASIC1.09□□□□□ -2.23
LINC00643Q86TS7 AC008537.2-201ENST00000596135 482 ntTSL 3 BASIC1.09□□□□□ -2.23
LINC00643Q86TS7 AC079880.2-201ENST00000603790 1213 ntBASIC1.09□□□□□ -2.23
LINC00643Q86TS7 AC007621.1-201ENST00000604544 437 ntBASIC1.09□□□□□ -2.23
LINC00643Q86TS7 AC005000.2-201ENST00000605468 310 ntBASIC1.09□□□□□ -2.23
LINC00643Q86TS7 AP001521.1-201ENST00000609150 300 ntBASIC1.09□□□□□ -2.23
LINC00643Q86TS7 AC004852.3-201ENST00000614131 326 ntBASIC1.09□□□□□ -2.23
LINC00643Q86TS7 C8orf59-213ENST00000619594 859 ntAPPRIS P1 TSL 1 (best) BASIC1.09□□□□□ -2.23
LINC00643Q86TS7 AL356118.1-201ENST00000635272 1078 ntBASIC1.09□□□□□ -2.23
LINC00643Q86TS7 AC025263.3-201ENST00000622965 1396 ntBASIC1.08□□□□□ -2.24
LINC00643Q86TS7 SGO1-205ENST00000419233 1582 ntTSL 1 (best) BASIC1.08□□□□□ -2.24
LINC00643Q86TS7 KLRC1-202ENST00000359151 1407 ntAPPRIS P4 TSL 1 (best) BASIC1.08□□□□□ -2.24
LINC00643Q86TS7 PHTF2-202ENST00000275575 4541 ntTSL 1 (best) BASIC1.08□□□□□ -2.24
LINC00643Q86TS7 ZNF644-212ENST00000621077 2056 ntTSL 5 BASIC1.08□□□□□ -2.24
LINC00643Q86TS7 RN7SKP226-201ENST00000364912 300 ntBASIC1.08□□□□□ -2.24
LINC00643Q86TS7 RNU6-220P-201ENST00000390919 107 ntBASIC1.08□□□□□ -2.24
LINC00643Q86TS7 CYB5AP4-201ENST00000396692 399 ntBASIC1.08□□□□□ -2.24
LINC00643Q86TS7 SLC9B1P2-201ENST00000398120 1184 ntBASIC1.08□□□□□ -2.24
LINC00643Q86TS7 SNORA81-201ENST00000408493 178 ntBASIC1.08□□□□□ -2.24
LINC00643Q86TS7 CYCSP48-201ENST00000417124 323 ntBASIC1.08□□□□□ -2.24
LINC00643Q86TS7 AC074117.2-201ENST00000417130 397 ntBASIC1.08□□□□□ -2.24
LINC00643Q86TS7 AL138962.1-201ENST00000417987 411 ntTSL 5 BASIC1.08□□□□□ -2.24
LINC00643Q86TS7 LINC02263-202ENST00000420701 597 ntTSL 5 BASIC1.08□□□□□ -2.24
LINC00643Q86TS7 AC098614.2-201ENST00000426040 255 ntBASIC1.08□□□□□ -2.24
LINC00643Q86TS7 Z93403.1-202ENST00000440002 713 ntTSL 3 BASIC1.08□□□□□ -2.24
LINC00643Q86TS7 AC006333.1-202ENST00000440504 555 ntTSL 4 BASIC1.08□□□□□ -2.24
LINC00643Q86TS7 AC124916.1-201ENST00000444020 547 ntBASIC1.08□□□□□ -2.24
LINC00643Q86TS7 RPL23AP6-201ENST00000446637 472 ntBASIC1.08□□□□□ -2.24
LINC00643Q86TS7 DYNLL1P5-201ENST00000467158 270 ntBASIC1.08□□□□□ -2.24
LINC00643Q86TS7 AC022336.1-201ENST00000475510 337 ntBASIC1.08□□□□□ -2.24
LINC00643Q86TS7 AC091959.2-201ENST00000477363 321 ntBASIC1.08□□□□□ -2.24
LINC00643Q86TS7 FO393415.2-201ENST00000480085 343 ntBASIC1.08□□□□□ -2.24
LINC00643Q86TS7 IGKV2-36-201ENST00000519999 223 ntBASIC1.08□□□□□ -2.24
LINC00643Q86TS7 IGKV3-31-201ENST00000523109 329 ntBASIC1.08□□□□□ -2.24
LINC00643Q86TS7 AP005597.4-201ENST00000526762 229 ntBASIC1.08□□□□□ -2.24
LINC00643Q86TS7 AP001189.6-201ENST00000528781 831 ntTSL 1 (best) BASIC1.08□□□□□ -2.24
LINC00643Q86TS7 APAF1-207ENST00000547743 651 ntTSL 3 BASIC1.08□□□□□ -2.24
LINC00643Q86TS7 LINC02329-201ENST00000554753 511 ntTSL 5 BASIC1.08□□□□□ -2.24
LINC00643Q86TS7 OR4K8P-201ENST00000578842 1048 ntBASIC1.08□□□□□ -2.24
LINC00643Q86TS7 AC025588.2-201ENST00000604851 466 ntBASIC1.08□□□□□ -2.24
LINC00643Q86TS7 AL357054.2-201ENST00000607644 423 ntTSL 5 BASIC1.08□□□□□ -2.24
LINC00643Q86TS7 AL445423.1-201ENST00000609941 536 ntBASIC1.08□□□□□ -2.24
Retrieved 100 of 98,524 protein–RNA pairs in 126.3 ms