Protein–RNA interactions for Protein: Q15459

SF3A1, Splicing factor 3A subunit 1, humanhuman

Known RBP Predictions only

Length 793 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1Q15459 MBNL1-224ENST00000545754 5147 ntTSL 5 BASIC5.12□□□□□ -1.59
SF3A1Q15459 MUC7-203ENST00000456088 2479 ntAPPRIS P2 TSL 4 BASIC5.12□□□□□ -1.59
SF3A1Q15459 CNTN6-201ENST00000350110 3814 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
SF3A1Q15459 TENM1-201ENST00000371130 12875 ntAPPRIS P3 TSL 1 (best) BASIC5.11□□□□□ -1.59
SF3A1Q15459 UGT2A3-201ENST00000251566 2965 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
SF3A1Q15459 TMEM68-218ENST00000617782 2477 ntAPPRIS P1 TSL 5 BASIC5.11□□□□□ -1.59
SF3A1Q15459 MUCL1-201ENST00000308796 470 ntAPPRIS P2 TSL 1 (best) BASIC5.11□□□□□ -1.59
SF3A1Q15459 RNU6ATAC5P-201ENST00000388104 126 ntBASIC5.11□□□□□ -1.59
SF3A1Q15459 RNA5SP397-201ENST00000391323 118 ntBASIC5.11□□□□□ -1.59
SF3A1Q15459 AC068050.1-201ENST00000394891 380 ntBASIC5.11□□□□□ -1.59
SF3A1Q15459 LAP3P1-201ENST00000403648 294 ntBASIC5.11□□□□□ -1.59
SF3A1Q15459 RPL23AP48-201ENST00000406913 488 ntBASIC5.11□□□□□ -1.59
SF3A1Q15459 RPS23P10-201ENST00000416185 486 ntBASIC5.11□□□□□ -1.59
SF3A1Q15459 AL353193.1-201ENST00000421444 268 ntBASIC5.11□□□□□ -1.59
SF3A1Q15459 EIF1P3-201ENST00000423841 334 ntBASIC5.11□□□□□ -1.59
SF3A1Q15459 USP9YP18-201ENST00000425912 695 ntBASIC5.11□□□□□ -1.59
SF3A1Q15459 AL603839.2-201ENST00000437060 546 ntTSL 5 BASIC5.11□□□□□ -1.59
SF3A1Q15459 RPS15AP9-201ENST00000439856 381 ntBASIC5.11□□□□□ -1.59
SF3A1Q15459 AL354936.1-201ENST00000441521 649 ntTSL 5 BASIC5.11□□□□□ -1.59
SF3A1Q15459 AL691497.1-201ENST00000443270 449 ntTSL 2 BASIC5.11□□□□□ -1.59
SF3A1Q15459 AC010326.1-201ENST00000462726 602 ntBASIC5.11□□□□□ -1.59
SF3A1Q15459 RPL21P104-201ENST00000464143 478 ntBASIC5.11□□□□□ -1.59
SF3A1Q15459 RPS26P28-201ENST00000470806 348 ntBASIC5.11□□□□□ -1.59
SF3A1Q15459 RN7SL481P-201ENST00000477764 299 ntBASIC5.11□□□□□ -1.59
SF3A1Q15459 AC099509.1-201ENST00000502437 652 ntTSL 2 BASIC5.11□□□□□ -1.59
SF3A1Q15459 AC022272.1-201ENST00000503478 777 ntTSL 2 BASIC5.11□□□□□ -1.59
SF3A1Q15459 ARL4AP2-201ENST00000507378 601 ntBASIC5.11□□□□□ -1.59
SF3A1Q15459 Y_RNA.704-201ENST00000516851 102 ntBASIC5.11□□□□□ -1.59
SF3A1Q15459 RAB9BP1-201ENST00000519581 626 ntBASIC5.11□□□□□ -1.59
SF3A1Q15459 AP001781.1-201ENST00000530977 207 ntBASIC5.11□□□□□ -1.59
SF3A1Q15459 LINC00520-201ENST00000554186 831 ntTSL 5 BASIC5.11□□□□□ -1.59
SF3A1Q15459 MIR3690-201ENST00000580266 75 ntBASIC5.11□□□□□ -1.59
SF3A1Q15459 MIR4697-201ENST00000582977 78 ntBASIC5.11□□□□□ -1.59
SF3A1Q15459 RPL12P25-202ENST00000598100 674 ntBASIC5.11□□□□□ -1.59
SF3A1Q15459 BDH2P1-201ENST00000602288 736 ntBASIC5.11□□□□□ -1.59
SF3A1Q15459 DPPA3P3-201ENST00000603842 430 ntBASIC5.11□□□□□ -1.59
SF3A1Q15459 AC007363.1-201ENST00000604736 620 ntBASIC5.11□□□□□ -1.59
SF3A1Q15459 AL161616.1-201ENST00000611867 286 ntBASIC5.11□□□□□ -1.59
SF3A1Q15459 MIR548A1HG-201ENST00000636739 558 ntTSL 4 BASIC5.11□□□□□ -1.59
SF3A1Q15459 AC008505.1-205ENST00000637847 703 ntTSL 5 BASIC5.11□□□□□ -1.59
SF3A1Q15459 ECT2-204ENST00000392692 4158 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
SF3A1Q15459 GPX8-203ENST00000503787 1411 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
SF3A1Q15459 DMD-230ENST00000620040 13746 ntAPPRIS ALT2 TSL 5 BASIC5.1□□□□□ -1.59
SF3A1Q15459 AC007685.1-201ENST00000329806 452 ntBASIC5.1□□□□□ -1.59
SF3A1Q15459 RNA5SP307-201ENST00000362863 116 ntBASIC5.1□□□□□ -1.59
SF3A1Q15459 Y_RNA.381-201ENST00000365666 102 ntBASIC5.1□□□□□ -1.59
SF3A1Q15459 RPS20P14-201ENST00000412545 360 ntBASIC5.1□□□□□ -1.59
SF3A1Q15459 AL158839.1-201ENST00000413943 575 ntTSL 2 BASIC5.1□□□□□ -1.59
SF3A1Q15459 AL590139.1-201ENST00000416267 400 ntBASIC5.1□□□□□ -1.59
SF3A1Q15459 SDCBPP3-201ENST00000419629 891 ntBASIC5.1□□□□□ -1.59
SF3A1Q15459 AL139415.2-201ENST00000431968 163 ntBASIC5.1□□□□□ -1.59
SF3A1Q15459 AL683807.1-202ENST00000432272 382 ntTSL 2 BASIC5.1□□□□□ -1.59
SF3A1Q15459 ZNF680P1-201ENST00000436625 1469 ntBASIC5.1□□□□□ -1.59
SF3A1Q15459 PLCL1-203ENST00000437704 5979 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
SF3A1Q15459 SDAD1P2-201ENST00000441308 2028 ntBASIC5.1□□□□□ -1.59
SF3A1Q15459 LINC01034-201ENST00000448806 277 ntTSL 3 BASIC5.1□□□□□ -1.59
SF3A1Q15459 AC069549.1-201ENST00000451584 499 ntTSL 3 BASIC5.1□□□□□ -1.59
SF3A1Q15459 ANKRD36C-202ENST00000456556 5428 ntAPPRIS P1 TSL 5 BASIC5.1□□□□□ -1.59
SF3A1Q15459 RPS27AP17-201ENST00000463344 455 ntBASIC5.1□□□□□ -1.59
SF3A1Q15459 EIF2S1-202ENST00000466499 2390 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
SF3A1Q15459 NCK1-204ENST00000469404 2403 ntTSL 2 BASIC5.1□□□□□ -1.59
SF3A1Q15459 MCCC1-AS1-201ENST00000471731 765 ntTSL 5 BASIC5.1□□□□□ -1.59
SF3A1Q15459 ANKRD7-204ENST00000477532 744 ntTSL 5 BASIC5.1□□□□□ -1.59
SF3A1Q15459 HSPD1P15-201ENST00000505573 1122 ntBASIC5.1□□□□□ -1.59
SF3A1Q15459 LEF1-218ENST00000512172 598 ntTSL 2 BASIC5.1□□□□□ -1.59
SF3A1Q15459 AC093689.1-201ENST00000514737 246 ntTSL 5 BASIC5.1□□□□□ -1.59
SF3A1Q15459 IGKV1-32-201ENST00000519290 311 ntBASIC5.1□□□□□ -1.59
SF3A1Q15459 IGLV3-26-201ENST00000520756 302 ntBASIC5.1□□□□□ -1.59
SF3A1Q15459 AP001646.1-201ENST00000527936 915 ntBASIC5.1□□□□□ -1.59
SF3A1Q15459 AL132780.1-201ENST00000548819 556 ntTSL 4 BASIC5.1□□□□□ -1.59
SF3A1Q15459 AL160191.1-201ENST00000555480 566 ntTSL 4 BASIC5.1□□□□□ -1.59
SF3A1Q15459 AC076968.1-201ENST00000566418 429 ntTSL 5 BASIC5.1□□□□□ -1.59
SF3A1Q15459 AC055876.1-202ENST00000567053 138 ntBASIC5.1□□□□□ -1.59
SF3A1Q15459 MIR3921-201ENST00000577308 85 ntBASIC5.1□□□□□ -1.59
SF3A1Q15459 AP005121.1-201ENST00000578243 469 ntTSL 3 BASIC5.1□□□□□ -1.59
SF3A1Q15459 MIR4270-201ENST00000581799 70 ntBASIC5.1□□□□□ -1.59
SF3A1Q15459 RN7SL690P-201ENST00000582087 240 ntBASIC5.1□□□□□ -1.59
SF3A1Q15459 AC002115.1-201ENST00000589603 568 ntTSL 4 BASIC5.1□□□□□ -1.59
SF3A1Q15459 SLC14A2-AS1-203ENST00000592286 528 ntTSL 4 BASIC5.1□□□□□ -1.59
SF3A1Q15459 SRD5A3-AS1-209ENST00000598819 552 ntTSL 5 BASIC5.1□□□□□ -1.59
SF3A1Q15459 AL049634.3-201ENST00000604968 457 ntBASIC5.1□□□□□ -1.59
SF3A1Q15459 Z98200.1-201ENST00000607298 470 ntBASIC5.1□□□□□ -1.59
SF3A1Q15459 AC020634.1-201ENST00000608701 549 ntBASIC5.1□□□□□ -1.59
SF3A1Q15459 CERS6-AS1-209ENST00000609766 642 ntTSL 5 BASIC5.1□□□□□ -1.59
SF3A1Q15459 AC017083.3-201ENST00000609955 700 ntBASIC5.1□□□□□ -1.59
SF3A1Q15459 AC068944.2-201ENST00000610373 403 ntBASIC5.1□□□□□ -1.59
SF3A1Q15459 GHR-213ENST00000622294 4312 ntTSL 5 BASIC5.1□□□□□ -1.59
SF3A1Q15459 PTP4A2-219ENST00000626355 606 ntTSL 5 BASIC5.1□□□□□ -1.59
SF3A1Q15459 LINC01002-206ENST00000631772 539 ntTSL 4 BASIC5.1□□□□□ -1.59
SF3A1Q15459 CEP295-201ENST00000325212 8057 ntAPPRIS P2 TSL 2 BASIC5.1□□□□□ -1.59
SF3A1Q15459 MEI4-201ENST00000602452 4800 ntAPPRIS P1 TSL 5 BASIC5.1□□□□□ -1.59
SF3A1Q15459 POSTN-201ENST00000379742 3071 ntAPPRIS ALT2 TSL 1 (best) BASIC5.1□□□□□ -1.59
SF3A1Q15459 CENPF-201ENST00000366955 10307 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
SF3A1Q15459 ZNF705D-202ENST00000400085 3377 ntAPPRIS P1 TSL 5 BASIC5.09□□□□□ -1.59
SF3A1Q15459 CLEC7A-202ENST00000304084 1130 ntAPPRIS ALT1 TSL 1 (best) BASIC5.09□□□□□ -1.59
SF3A1Q15459 PKIB-202ENST00000354275 1043 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.59
SF3A1Q15459 RNU6-74P-201ENST00000384235 107 ntBASIC5.09□□□□□ -1.59
SF3A1Q15459 MIR514A1-201ENST00000385133 98 ntBASIC5.09□□□□□ -1.59
SF3A1Q15459 AC008154.2-201ENST00000420268 414 ntTSL 3 BASIC5.09□□□□□ -1.59
SF3A1Q15459 LINC00368-201ENST00000422994 650 ntTSL 1 (best) BASIC5.09□□□□□ -1.59
Retrieved 100 of 98,524 protein–RNA pairs in 101.8 ms