Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 RNU6-1243P-201ENST00000364028 107 ntBASIC3.2□□□□□ -1.9
MSH6P52701 Y_RNA.269-201ENST00000364685 89 ntBASIC3.2□□□□□ -1.9
MSH6P52701 RNU6-356P-201ENST00000384140 107 ntBASIC3.2□□□□□ -1.9
MSH6P52701 RNU2-72P-201ENST00000411175 163 ntBASIC3.2□□□□□ -1.9
MSH6P52701 AL078590.1-201ENST00000412602 479 ntTSL 3 BASIC3.2□□□□□ -1.9
MSH6P52701 ACTR3BP6-201ENST00000422332 1241 ntBASIC3.2□□□□□ -1.9
MSH6P52701 MTCO2P17-201ENST00000424336 677 ntBASIC3.2□□□□□ -1.9
MSH6P52701 AL590867.3-201ENST00000436953 438 ntTSL 3 BASIC3.2□□□□□ -1.9
MSH6P52701 RPL7P54-201ENST00000438336 674 ntBASIC3.2□□□□□ -1.9
MSH6P52701 AL929288.2-201ENST00000446368 407 ntBASIC3.2□□□□□ -1.9
MSH6P52701 AC008379.1-201ENST00000463655 464 ntBASIC3.2□□□□□ -1.9
MSH6P52701 AC004884.2-201ENST00000476569 546 ntTSL 4 BASIC3.2□□□□□ -1.9
MSH6P52701 AC072039.1-201ENST00000477611 581 ntBASIC3.2□□□□□ -1.9
MSH6P52701 LINC00888-204ENST00000487386 421 ntBASIC3.2□□□□□ -1.9
MSH6P52701 AC106872.3-201ENST00000495104 446 ntBASIC3.2□□□□□ -1.9
MSH6P52701 AC078918.1-201ENST00000498515 228 ntBASIC3.2□□□□□ -1.9
MSH6P52701 LINC02270-201ENST00000505386 610 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
MSH6P52701 AC093725.2-201ENST00000507808 356 ntTSL 2 BASIC3.2□□□□□ -1.9
MSH6P52701 AC112518.2-201ENST00000508565 425 ntBASIC3.2□□□□□ -1.9
MSH6P52701 TMEM248P1-201ENST00000510579 951 ntBASIC3.2□□□□□ -1.9
MSH6P52701 AC104248.1-202ENST00000524134 486 ntTSL 5 BASIC3.2□□□□□ -1.9
MSH6P52701 AC079035.1-201ENST00000551713 848 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
MSH6P52701 TMEM87A-212ENST00000568432 750 ntTSL 3 BASIC3.2□□□□□ -1.9
MSH6P52701 RN7SL622P-201ENST00000585292 275 ntBASIC3.2□□□□□ -1.9
MSH6P52701 AC104365.3-201ENST00000587011 625 ntTSL 5 BASIC3.2□□□□□ -1.9
MSH6P52701 AC011494.1-201ENST00000596454 237 ntBASIC3.2□□□□□ -1.9
MSH6P52701 AC098483.2-201ENST00000603158 454 ntBASIC3.2□□□□□ -1.9
MSH6P52701 AL022099.1-201ENST00000604551 712 ntBASIC3.2□□□□□ -1.9
MSH6P52701 AL160408.5-201ENST00000607759 526 ntTSL 4 BASIC3.2□□□□□ -1.9
MSH6P52701 MIR6845-201ENST00000613182 61 ntBASIC3.2□□□□□ -1.9
MSH6P52701 AC005156.1-201ENST00000613371 573 ntBASIC3.2□□□□□ -1.9
MSH6P52701 AC110491.2-201ENST00000624061 646 ntTSL 5 BASIC3.2□□□□□ -1.9
MSH6P52701 COMMD6-213ENST00000626103 120 ntTSL 5 BASIC3.2□□□□□ -1.9
MSH6P52701 OR6C3-203ENST00000641740 1093 ntAPPRIS P1 BASIC3.2□□□□□ -1.9
MSH6P52701 CUL1P1-201ENST00000509510 2425 ntBASIC3.19□□□□□ -1.9
MSH6P52701 CNIH4-201ENST00000366856 808 ntAPPRIS ALT1 TSL 2 BASIC3.19□□□□□ -1.9
MSH6P52701 MIR591-201ENST00000385290 95 ntBASIC3.19□□□□□ -1.9
MSH6P52701 AP002784.2-201ENST00000397300 549 ntBASIC3.19□□□□□ -1.9
MSH6P52701 DSTNP4-201ENST00000399472 474 ntBASIC3.19□□□□□ -1.9
MSH6P52701 UQCRFS1P3-201ENST00000407697 385 ntBASIC3.19□□□□□ -1.9
MSH6P52701 TRIM60P5Y-201ENST00000413946 574 ntBASIC3.19□□□□□ -1.9
MSH6P52701 AC019070.1-201ENST00000415008 1024 ntBASIC3.19□□□□□ -1.9
MSH6P52701 PAICSP7-201ENST00000419829 962 ntBASIC3.19□□□□□ -1.9
MSH6P52701 AL009174.1-201ENST00000426577 416 ntBASIC3.19□□□□□ -1.9
MSH6P52701 HSFY3P-201ENST00000444242 1191 ntBASIC3.19□□□□□ -1.9
MSH6P52701 AC009158.1-205ENST00000452511 895 ntTSL 3 BASIC3.19□□□□□ -1.9
MSH6P52701 AL021393.1-201ENST00000456740 539 ntTSL 5 BASIC3.19□□□□□ -1.9
MSH6P52701 RPL32P14-201ENST00000463196 378 ntBASIC3.19□□□□□ -1.9
MSH6P52701 GYPA-204ENST00000504786 357 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
MSH6P52701 AC016065.2-201ENST00000514530 444 ntBASIC3.19□□□□□ -1.9
MSH6P52701 PRELID3BP4-201ENST00000515476 571 ntBASIC3.19□□□□□ -1.9
MSH6P52701 RNU6-488P-201ENST00000515918 99 ntBASIC3.19□□□□□ -1.9
MSH6P52701 RNU6-416P-201ENST00000516265 103 ntBASIC3.19□□□□□ -1.9
MSH6P52701 AC009597.1-201ENST00000521215 584 ntTSL 4 BASIC3.19□□□□□ -1.9
MSH6P52701 AC011363.1-201ENST00000524198 458 ntTSL 5 BASIC3.19□□□□□ -1.9
MSH6P52701 LINC01481-201ENST00000552998 629 ntTSL 2 BASIC3.19□□□□□ -1.9
MSH6P52701 AL136520.1-202ENST00000555494 763 ntBASIC3.19□□□□□ -1.9
MSH6P52701 AC090695.1-201ENST00000561269 1222 ntBASIC3.19□□□□□ -1.9
MSH6P52701 AC011824.2-201ENST00000579896 579 ntTSL 4 BASIC3.19□□□□□ -1.9
MSH6P52701 STARD13-AS-208ENST00000589472 859 ntTSL 5 BASIC3.19□□□□□ -1.9
MSH6P52701 AC092474.3-201ENST00000603022 568 ntBASIC3.19□□□□□ -1.9
MSH6P52701 AC090425.2-201ENST00000608818 501 ntBASIC3.19□□□□□ -1.9
MSH6P52701 FAM184A-202ENST00000352896 3700 ntAPPRIS ALT1 TSL 1 (best) BASIC3.19□□□□□ -1.9
MSH6P52701 HDX-206ENST00000506585 6158 ntTSL 2 BASIC3.19□□□□□ -1.9
MSH6P52701 IDE-201ENST00000265986 5877 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
MSH6P52701 ZNF849P-201ENST00000594711 1566 ntBASIC3.18□□□□□ -1.9
MSH6P52701 NBPF20-202ENST00000392971 18450 ntAPPRIS P2 TSL 5 BASIC3.18□□□□□ -1.9
MSH6P52701 U8.9-201ENST00000365667 134 ntBASIC3.18□□□□□ -1.9
MSH6P52701 SNORA41-201ENST00000384675 132 ntBASIC3.18□□□□□ -1.9
MSH6P52701 CASP3-203ENST00000393588 677 ntTSL 4 BASIC3.18□□□□□ -1.9
MSH6P52701 AL162578.1-201ENST00000406202 378 ntBASIC3.18□□□□□ -1.9
MSH6P52701 AC241520.1-201ENST00000422654 1099 ntBASIC3.18□□□□□ -1.9
MSH6P52701 AC006076.1-201ENST00000423233 345 ntTSL 3 BASIC3.18□□□□□ -1.9
MSH6P52701 AC009414.1-201ENST00000427200 443 ntBASIC3.18□□□□□ -1.9
MSH6P52701 GACAT1-202ENST00000441383 540 ntTSL 4 BASIC3.18□□□□□ -1.9
MSH6P52701 AL158053.1-201ENST00000441503 453 ntBASIC3.18□□□□□ -1.9
MSH6P52701 HIGD1AP6-201ENST00000521833 279 ntBASIC3.18□□□□□ -1.9
MSH6P52701 AC073591.1-201ENST00000552736 597 ntTSL 3 BASIC3.18□□□□□ -1.9
MSH6P52701 AC023824.3-201ENST00000569003 562 ntBASIC3.18□□□□□ -1.9
MSH6P52701 LINC01928-201ENST00000591029 504 ntTSL 3 BASIC3.18□□□□□ -1.9
MSH6P52701 AC133794.1-201ENST00000602731 914 ntBASIC3.18□□□□□ -1.9
MSH6P52701 AC026741.1-201ENST00000605892 482 ntBASIC3.18□□□□□ -1.9
MSH6P52701 AC121761.2-201ENST00000617300 689 ntBASIC3.18□□□□□ -1.9
MSH6P52701 AC022079.2-201ENST00000619739 566 ntBASIC3.18□□□□□ -1.9
MSH6P52701 CFH-202ENST00000367429 4127 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
MSH6P52701 AL359893.1-201ENST00000447628 1580 ntBASIC3.18□□□□□ -1.9
MSH6P52701 FBXO11-201ENST00000402508 3844 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
MSH6P52701 Z99496.1-201ENST00000469424 1477 ntBASIC3.17□□□□□ -1.9
MSH6P52701 FAM46D-201ENST00000308293 3011 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
MSH6P52701 AC073055.1-201ENST00000456901 1621 ntBASIC3.17□□□□□ -1.9
MSH6P52701 ZFAND6-212ENST00000559775 1602 ntAPPRIS P1 TSL 2 BASIC3.17□□□□□ -1.9
MSH6P52701 SNORA67.3-201ENST00000384366 140 ntBASIC3.17□□□□□ -1.9
MSH6P52701 SNORA26.7-201ENST00000391288 122 ntBASIC3.17□□□□□ -1.9
MSH6P52701 AP000567.1-201ENST00000406413 156 ntBASIC3.17□□□□□ -1.9
MSH6P52701 AL512637.2-201ENST00000431287 1256 ntBASIC3.17□□□□□ -1.9
MSH6P52701 AC024597.1-201ENST00000442753 706 ntTSL 5 BASIC3.17□□□□□ -1.9
MSH6P52701 PTGES3P5-201ENST00000455109 434 ntBASIC3.17□□□□□ -1.9
MSH6P52701 MTCO2P9-201ENST00000503214 694 ntBASIC3.17□□□□□ -1.9
MSH6P52701 IGJP1-201ENST00000522682 475 ntBASIC3.17□□□□□ -1.9
MSH6P52701 ZDHHC20P3-201ENST00000531576 336 ntBASIC3.17□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 103.8 ms