Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 RPS3AP52-201ENST00000435639 297 ntBASIC4.36□□□□□ -1.71
MSX2P35548 AL162388.1-201ENST00000450912 352 ntBASIC4.36□□□□□ -1.71
MSX2P35548 TTTY23B-202ENST00000451467 512 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
MSX2P35548 TTTY23-201ENST00000452889 512 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
MSX2P35548 AC011998.3-201ENST00000457053 254 ntTSL 3 BASIC4.36□□□□□ -1.71
MSX2P35548 AL589765.1-201ENST00000457548 386 ntTSL 2 BASIC4.36□□□□□ -1.71
MSX2P35548 AL049714.1-201ENST00000466686 347 ntBASIC4.36□□□□□ -1.71
MSX2P35548 COPS8P2-201ENST00000473228 627 ntBASIC4.36□□□□□ -1.71
MSX2P35548 RPS18P6-201ENST00000476880 458 ntBASIC4.36□□□□□ -1.71
MSX2P35548 AC006499.3-201ENST00000506077 748 ntBASIC4.36□□□□□ -1.71
MSX2P35548 AC092436.1-201ENST00000506450 503 ntBASIC4.36□□□□□ -1.71
MSX2P35548 HIGD1AP14-201ENST00000507617 282 ntBASIC4.36□□□□□ -1.71
MSX2P35548 RNU6-559P-201ENST00000516151 98 ntBASIC4.36□□□□□ -1.71
MSX2P35548 AC087362.1-201ENST00000527912 434 ntTSL 5 BASIC4.36□□□□□ -1.71
MSX2P35548 MS4A7-208ENST00000530234 730 ntTSL 3 BASIC4.36□□□□□ -1.71
MSX2P35548 AC084880.2-201ENST00000536009 501 ntTSL 3 BASIC4.36□□□□□ -1.71
MSX2P35548 IGHV4OR15-8-201ENST00000557788 353 ntAPPRIS P1 BASIC4.36□□□□□ -1.71
MSX2P35548 RPL21P12-201ENST00000559810 515 ntBASIC4.36□□□□□ -1.71
MSX2P35548 OR1F2P-201ENST00000570470 933 ntBASIC4.36□□□□□ -1.71
MSX2P35548 AP005059.2-201ENST00000577527 578 ntTSL 3 BASIC4.36□□□□□ -1.71
MSX2P35548 MIR4700-201ENST00000578311 74 ntBASIC4.36□□□□□ -1.71
MSX2P35548 AC005899.4-201ENST00000581915 514 ntTSL 4 BASIC4.36□□□□□ -1.71
MSX2P35548 AL627309.6-201ENST00000606857 840 ntBASIC4.36□□□□□ -1.71
MSX2P35548 AL662844.3-201ENST00000606909 517 ntTSL 5 BASIC4.36□□□□□ -1.71
MSX2P35548 AP001521.2-201ENST00000608772 546 ntBASIC4.36□□□□□ -1.71
MSX2P35548 AC015813.4-201ENST00000610469 179 ntBASIC4.36□□□□□ -1.71
MSX2P35548 UBE2E2-206ENST00000613545 282 ntTSL 5 BASIC4.36□□□□□ -1.71
MSX2P35548 AC135068.2-201ENST00000622410 353 ntAPPRIS P1 BASIC4.36□□□□□ -1.71
MSX2P35548 AC091905.2-201ENST00000623143 306 ntBASIC4.36□□□□□ -1.71
MSX2P35548 SLC8A1-AS1-239ENST00000631142 623 ntTSL 5 BASIC4.36□□□□□ -1.71
MSX2P35548 MTND4LP32-201ENST00000636111 270 ntBASIC4.36□□□□□ -1.71
MSX2P35548 DDX4-204ENST00000505374 2884 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
MSX2P35548 ABI3BP-206ENST00000471714 6783 ntAPPRIS ALT2 TSL 5 BASIC4.36□□□□□ -1.71
MSX2P35548 AP004289.2-201ENST00000444413 1457 ntBASIC4.36□□□□□ -1.71
MSX2P35548 AC012618.3-205ENST00000637896 1496 ntBASIC4.36□□□□□ -1.71
MSX2P35548 SLC44A5-202ENST00000370859 3896 ntAPPRIS ALT2 TSL 2 BASIC4.36□□□□□ -1.71
MSX2P35548 AGTR1-202ENST00000402260 2172 ntTSL 5 BASIC4.36□□□□□ -1.71
MSX2P35548 ENPP2-202ENST00000259486 3233 ntAPPRIS P3 TSL 1 (best) BASIC4.35□□□□□ -1.71
MSX2P35548 PABPC1P6-201ENST00000445594 1829 ntBASIC4.35□□□□□ -1.71
MSX2P35548 AC009951.1-201ENST00000623674 2614 ntBASIC4.35□□□□□ -1.71
MSX2P35548 RNU6-552P-201ENST00000362869 119 ntBASIC4.35□□□□□ -1.71
MSX2P35548 MIR223-201ENST00000385204 110 ntBASIC4.35□□□□□ -1.71
MSX2P35548 RNU6-903P-201ENST00000391270 109 ntBASIC4.35□□□□□ -1.71
MSX2P35548 RNU4-14P-201ENST00000410858 122 ntBASIC4.35□□□□□ -1.71
MSX2P35548 RNU2-62P-201ENST00000410868 191 ntBASIC4.35□□□□□ -1.71
MSX2P35548 LINC02257-202ENST00000433576 720 ntTSL 5 BASIC4.35□□□□□ -1.71
MSX2P35548 UBE2V1P13-201ENST00000436983 439 ntBASIC4.35□□□□□ -1.71
MSX2P35548 AL392086.1-201ENST00000457632 299 ntTSL 3 BASIC4.35□□□□□ -1.71
MSX2P35548 RPS29P15-201ENST00000458329 171 ntBASIC4.35□□□□□ -1.71
MSX2P35548 RNU7-66P-201ENST00000459469 62 ntBASIC4.35□□□□□ -1.71
MSX2P35548 AC010469.1-201ENST00000463864 576 ntBASIC4.35□□□□□ -1.71
MSX2P35548 RPS4XP10-201ENST00000465034 731 ntBASIC4.35□□□□□ -1.71
MSX2P35548 LINC01206-203ENST00000476815 482 ntTSL 3 BASIC4.35□□□□□ -1.71
MSX2P35548 AC012181.1-201ENST00000479895 423 ntBASIC4.35□□□□□ -1.71
MSX2P35548 AC068587.1-201ENST00000483613 781 ntBASIC4.35□□□□□ -1.71
MSX2P35548 AC090096.1-201ENST00000489168 390 ntBASIC4.35□□□□□ -1.71
MSX2P35548 AC008897.1-201ENST00000494006 347 ntBASIC4.35□□□□□ -1.71
MSX2P35548 AC072052.1-201ENST00000496556 306 ntBASIC4.35□□□□□ -1.71
MSX2P35548 MTCO1P29-201ENST00000496868 288 ntBASIC4.35□□□□□ -1.71
MSX2P35548 AC008953.1-201ENST00000497334 318 ntBASIC4.35□□□□□ -1.71
MSX2P35548 AC091885.1-201ENST00000506658 268 ntBASIC4.35□□□□□ -1.71
MSX2P35548 AC098587.1-201ENST00000508241 540 ntTSL 4 BASIC4.35□□□□□ -1.71
MSX2P35548 MYL12AP1-201ENST00000518490 515 ntBASIC4.35□□□□□ -1.71
MSX2P35548 PWRN1-202ENST00000562501 642 ntTSL 3 BASIC4.35□□□□□ -1.71
MSX2P35548 AC026771.1-201ENST00000564672 415 ntTSL 2 BASIC4.35□□□□□ -1.71
MSX2P35548 MIR4775-201ENST00000581168 75 ntBASIC4.35□□□□□ -1.71
MSX2P35548 AC136443.5-201ENST00000603741 370 ntBASIC4.35□□□□□ -1.71
MSX2P35548 AL080274.1-201ENST00000605565 220 ntBASIC4.35□□□□□ -1.71
MSX2P35548 PRKCQ-AS1-207ENST00000607996 531 ntTSL 5 BASIC4.35□□□□□ -1.71
MSX2P35548 AC093799.2-201ENST00000610062 578 ntBASIC4.35□□□□□ -1.71
MSX2P35548 FAM27B-201ENST00000610601 213 ntBASIC4.35□□□□□ -1.71
MSX2P35548 LINC01378-205ENST00000615833 158 ntTSL 5 BASIC4.35□□□□□ -1.71
MSX2P35548 AL138721.1-201ENST00000616756 179 ntBASIC4.35□□□□□ -1.71
MSX2P35548 MIR4496-201ENST00000635896 61 ntBASIC4.35□□□□□ -1.71
MSX2P35548 PRKAA2-202ENST00000610361 9280 ntAPPRIS ALT1 TSL 5 BASIC4.35□□□□□ -1.71
MSX2P35548 C2orf16-202ENST00000447166 16401 ntAPPRIS ALT2 TSL 3 BASIC4.35□□□□□ -1.71
MSX2P35548 CEP295-201ENST00000325212 8057 ntAPPRIS P2 TSL 2 BASIC4.35□□□□□ -1.71
MSX2P35548 R3HCC1L-205ENST00000612478 3337 ntTSL 5 BASIC4.35□□□□□ -1.71
MSX2P35548 DDX20-202ENST00000475700 4332 ntTSL 2 BASIC4.35□□□□□ -1.71
MSX2P35548 SLC25A17-202ENST00000402844 2405 ntTSL 2 BASIC4.35□□□□□ -1.71
MSX2P35548 CYP19A1-201ENST00000396402 4417 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
MSX2P35548 ORC3-201ENST00000257789 2501 ntAPPRIS P3 TSL 1 (best) BASIC4.35□□□□□ -1.71
MSX2P35548 BRCA2-201ENST00000380152 11986 ntAPPRIS P1 TSL 5 BASIC4.35□□□□□ -1.71
MSX2P35548 SNCA-AS1-201ENST00000501215 2646 ntTSL 2 BASIC4.35□□□□□ -1.71
MSX2P35548 ZNF678-202ENST00000397097 8212 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
MSX2P35548 AC104662.3-202ENST00000507794 4055 ntTSL 2 BASIC4.35□□□□□ -1.71
MSX2P35548 USP44-208ENST00000552440 1818 ntTSL 5 BASIC4.35□□□□□ -1.71
MSX2P35548 AL442639.1-201ENST00000625030 1899 ntBASIC4.35□□□□□ -1.71
MSX2P35548 C2orf73-202ENST00000398634 1921 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.71
MSX2P35548 CARF-203ENST00000414439 2099 ntTSL 2 BASIC4.34□□□□□ -1.71
MSX2P35548 ARHGEF38-202ENST00000420470 5454 ntAPPRIS P1 TSL 5 BASIC4.34□□□□□ -1.71
MSX2P35548 RGS5-201ENST00000313961 5862 ntAPPRIS P3 TSL 1 (best) BASIC4.34□□□□□ -1.71
MSX2P35548 CFAP70-203ENST00000355577 3691 ntTSL 5 BASIC4.34□□□□□ -1.71
MSX2P35548 HSPE1P11-201ENST00000339579 310 ntBASIC4.34□□□□□ -1.71
MSX2P35548 RNU6-254P-201ENST00000363377 107 ntBASIC4.34□□□□□ -1.71
MSX2P35548 U3.11-201ENST00000364476 212 ntBASIC4.34□□□□□ -1.71
MSX2P35548 RNU4-66P-201ENST00000365199 138 ntBASIC4.34□□□□□ -1.71
MSX2P35548 Y_RNA.339-201ENST00000365325 102 ntBASIC4.34□□□□□ -1.71
MSX2P35548 RNA5SP22-201ENST00000365393 109 ntBASIC4.34□□□□□ -1.71
MSX2P35548 RNU1-63P-201ENST00000383902 164 ntBASIC4.34□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 97.8 ms