Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 APAF1-208ENST00000549007 3492 ntTSL 1 (best) BASIC3.49□□□□□ -1.85
MSH3P20585 UFM1-201ENST00000239878 3138 ntAPPRIS P1 TSL 1 (best) BASIC3.49□□□□□ -1.85
MSH3P20585 LINC02475-202ENST00000512678 2622 ntTSL 1 (best) BASIC3.49□□□□□ -1.85
MSH3P20585 AC068647.1-201ENST00000489539 2265 ntBASIC3.49□□□□□ -1.85
MSH3P20585 FAM71D-211ENST00000612183 1790 ntAPPRIS P1 TSL 2 BASIC3.49□□□□□ -1.85
MSH3P20585 WDR49-201ENST00000308378 2594 ntAPPRIS P2 TSL 1 (best) BASIC3.49□□□□□ -1.85
MSH3P20585 AC073073.2-201ENST00000609827 2578 ntBASIC3.49□□□□□ -1.85
MSH3P20585 CEP44-201ENST00000296519 4173 ntAPPRIS P1 TSL 1 (best) BASIC3.49□□□□□ -1.85
MSH3P20585 FRG1CP-201ENST00000358464 769 ntBASIC3.49□□□□□ -1.85
MSH3P20585 RNVU1-3-201ENST00000364313 161 ntBASIC3.49□□□□□ -1.85
MSH3P20585 NFIB-202ENST00000380924 840 ntTSL 5 BASIC3.49□□□□□ -1.85
MSH3P20585 RNU6-769P-201ENST00000384407 104 ntBASIC3.49□□□□□ -1.85
MSH3P20585 LGALS16-201ENST00000392051 624 ntAPPRIS P1 TSL 1 (best) BASIC3.49□□□□□ -1.85
MSH3P20585 HIGD1C-201ENST00000398455 371 ntAPPRIS P1 TSL 1 (best) BASIC3.49□□□□□ -1.85
MSH3P20585 MTCYBP36-201ENST00000404146 440 ntBASIC3.49□□□□□ -1.85
MSH3P20585 AL138880.1-201ENST00000405824 642 ntBASIC3.49□□□□□ -1.85
MSH3P20585 PPP1R1C-203ENST00000409702 1157 ntAPPRIS P1 TSL 1 (best) BASIC3.49□□□□□ -1.85
MSH3P20585 RN7SKP27-201ENST00000410684 333 ntBASIC3.49□□□□□ -1.85
MSH3P20585 AC007390.1-201ENST00000415722 356 ntBASIC3.49□□□□□ -1.85
MSH3P20585 MTATP6P27-201ENST00000416987 621 ntBASIC3.49□□□□□ -1.85
MSH3P20585 AC000123.1-201ENST00000418215 516 ntTSL 5 BASIC3.49□□□□□ -1.85
MSH3P20585 DBIP2-201ENST00000419076 262 ntBASIC3.49□□□□□ -1.85
MSH3P20585 MTCO2P34-201ENST00000421994 607 ntBASIC3.49□□□□□ -1.85
MSH3P20585 SLC44A3-AS1-205ENST00000424505 612 ntBASIC3.49□□□□□ -1.85
MSH3P20585 NAALADL2-AS1-201ENST00000426315 804 ntTSL 5 BASIC3.49□□□□□ -1.85
MSH3P20585 AL445669.1-201ENST00000426743 755 ntBASIC3.49□□□□□ -1.85
MSH3P20585 CYCSP4-201ENST00000429682 331 ntBASIC3.49□□□□□ -1.85
MSH3P20585 GCA-203ENST00000429691 824 ntTSL 3 BASIC3.49□□□□□ -1.85
MSH3P20585 AL158071.1-201ENST00000430315 461 ntBASIC3.49□□□□□ -1.85
MSH3P20585 AC091286.1-201ENST00000431233 461 ntBASIC3.49□□□□□ -1.85
MSH3P20585 MTND1P28-201ENST00000435623 950 ntBASIC3.49□□□□□ -1.85
MSH3P20585 AC012070.1-201ENST00000442062 427 ntTSL 3 BASIC3.49□□□□□ -1.85
MSH3P20585 AC099342.1-201ENST00000446399 1124 ntTSL 3 BASIC3.49□□□□□ -1.85
MSH3P20585 AL592447.1-201ENST00000447592 540 ntBASIC3.49□□□□□ -1.85
MSH3P20585 LINC01828-202ENST00000450294 955 ntTSL 5 BASIC3.49□□□□□ -1.85
MSH3P20585 LINC01810-201ENST00000450397 411 ntTSL 3 BASIC3.49□□□□□ -1.85
MSH3P20585 CHRM3-AS2-203ENST00000458325 895 ntTSL 2 BASIC3.49□□□□□ -1.85
MSH3P20585 AP001992.1-205ENST00000462248 379 ntBASIC3.49□□□□□ -1.85
MSH3P20585 AC084357.1-201ENST00000473404 255 ntBASIC3.49□□□□□ -1.85
MSH3P20585 AC104563.1-201ENST00000476147 376 ntBASIC3.49□□□□□ -1.85
MSH3P20585 AP000797.1-201ENST00000478870 387 ntBASIC3.49□□□□□ -1.85
MSH3P20585 HMGB1P36-201ENST00000487709 576 ntBASIC3.49□□□□□ -1.85
MSH3P20585 LINC01487-202ENST00000490497 423 ntTSL 3 BASIC3.49□□□□□ -1.85
MSH3P20585 AC078918.1-201ENST00000498515 228 ntBASIC3.49□□□□□ -1.85
MSH3P20585 THAP6-203ENST00000502620 582 ntTSL 3 BASIC3.49□□□□□ -1.85
MSH3P20585 LAMTOR3P2-201ENST00000504479 232 ntBASIC3.49□□□□□ -1.85
MSH3P20585 CBX3P3-201ENST00000508108 532 ntBASIC3.49□□□□□ -1.85
MSH3P20585 MTCO2P32-201ENST00000514865 403 ntBASIC3.49□□□□□ -1.85
MSH3P20585 RN7SKP13-201ENST00000515933 244 ntBASIC3.49□□□□□ -1.85
MSH3P20585 AP006245.1-201ENST00000522549 120 ntBASIC3.49□□□□□ -1.85
MSH3P20585 AC090857.2-201ENST00000526362 723 ntTSL 2 BASIC3.49□□□□□ -1.85
MSH3P20585 AC103843.2-201ENST00000530523 682 ntBASIC3.49□□□□□ -1.85
MSH3P20585 AP002963.1-201ENST00000530590 184 ntBASIC3.49□□□□□ -1.85
MSH3P20585 AP000786.1-201ENST00000541092 581 ntTSL 4 BASIC3.49□□□□□ -1.85
MSH3P20585 AL160191.1-202ENST00000554008 576 ntTSL 4 BASIC3.49□□□□□ -1.85
MSH3P20585 TGIF1P1-201ENST00000558095 802 ntBASIC3.49□□□□□ -1.85
MSH3P20585 AC053481.3-201ENST00000577881 843 ntBASIC3.49□□□□□ -1.85
MSH3P20585 AC090616.5-202ENST00000582111 297 ntBASIC3.49□□□□□ -1.85
MSH3P20585 MIR4307-201ENST00000582802 84 ntBASIC3.49□□□□□ -1.85
MSH3P20585 AP005380.1-201ENST00000584896 547 ntTSL 4 BASIC3.49□□□□□ -1.85
MSH3P20585 AC010928.3-201ENST00000587712 541 ntBASIC3.49□□□□□ -1.85
MSH3P20585 SATB1-AS1-207ENST00000593741 955 ntTSL 5 BASIC3.49□□□□□ -1.85
MSH3P20585 ZEB2-AS1-204ENST00000595109 855 ntTSL 5 BASIC3.49□□□□□ -1.85
MSH3P20585 BBIP1P1-201ENST00000602999 279 ntBASIC3.49□□□□□ -1.85
MSH3P20585 AC006254.3-201ENST00000603353 884 ntBASIC3.49□□□□□ -1.85
MSH3P20585 PRELID3BP8-201ENST00000604148 295 ntBASIC3.49□□□□□ -1.85
MSH3P20585 AL365503.1-201ENST00000605247 905 ntBASIC3.49□□□□□ -1.85
MSH3P20585 SNORA51-201ENST00000606420 132 ntBASIC3.49□□□□□ -1.85
MSH3P20585 DAOA-AS1_2.2-201ENST00000610818 204 ntBASIC3.49□□□□□ -1.85
MSH3P20585 DLEU2_1.1-201ENST00000612089 120 ntBASIC3.49□□□□□ -1.85
MSH3P20585 DLEU2_1.2-201ENST00000614667 120 ntBASIC3.49□□□□□ -1.85
MSH3P20585 U73479.1-201ENST00000618062 168 ntBASIC3.49□□□□□ -1.85
MSH3P20585 AC073968.1-201ENST00000618594 637 ntBASIC3.49□□□□□ -1.85
MSH3P20585 AC009509.4-201ENST00000619202 509 ntBASIC3.49□□□□□ -1.85
MSH3P20585 AC092656.1-203ENST00000624134 423 ntBASIC3.49□□□□□ -1.85
MSH3P20585 AC098617.1-218ENST00000628836 624 ntTSL 5 BASIC3.49□□□□□ -1.85
MSH3P20585 EVI2B-202ENST00000577894 1597 ntAPPRIS P1 TSL 2 BASIC3.49□□□□□ -1.85
MSH3P20585 AL365440.1-201ENST00000436135 2167 ntBASIC3.49□□□□□ -1.85
MSH3P20585 LRRTM2-201ENST00000274711 6017 ntAPPRIS P1 TSL 1 (best) BASIC3.49□□□□□ -1.85
MSH3P20585 CSNK1G3-203ENST00000361991 2424 ntAPPRIS P3 TSL 1 (best) BASIC3.49□□□□□ -1.85
MSH3P20585 PAPOLA-202ENST00000392990 2588 ntTSL 5 BASIC3.49□□□□□ -1.85
MSH3P20585 FBXL13-204ENST00000436908 2577 ntTSL 5 BASIC3.49□□□□□ -1.85
MSH3P20585 MYOT-202ENST00000421631 1474 ntTSL 2 BASIC3.48□□□□□ -1.85
MSH3P20585 AC006378.2-201ENST00000623178 2476 ntBASIC3.48□□□□□ -1.85
MSH3P20585 TCP11X1-203ENST00000623912 1715 ntTSL 5 BASIC3.48□□□□□ -1.85
MSH3P20585 MFSD8-233ENST00000641482 4860 ntBASIC3.48□□□□□ -1.85
MSH3P20585 DCUN1D1-201ENST00000292782 7954 ntAPPRIS P1 TSL 1 (best) BASIC3.48□□□□□ -1.85
MSH3P20585 SPRR2D-203ENST00000368757 800 ntAPPRIS P1 TSL 3 BASIC3.48□□□□□ -1.85
MSH3P20585 AIF1-202ENST00000376049 524 ntTSL 1 (best) BASIC3.48□□□□□ -1.85
MSH3P20585 RNU6-339P-201ENST00000384310 107 ntBASIC3.48□□□□□ -1.85
MSH3P20585 U3.29-201ENST00000391296 212 ntBASIC3.48□□□□□ -1.85
MSH3P20585 MRPL30-202ENST00000409145 562 ntTSL 2 BASIC3.48□□□□□ -1.85
MSH3P20585 RN7SKP53-201ENST00000411337 315 ntBASIC3.48□□□□□ -1.85
MSH3P20585 AC009505.1-201ENST00000413151 424 ntTSL 2 BASIC3.48□□□□□ -1.85
MSH3P20585 RPL17P12-201ENST00000413391 526 ntBASIC3.48□□□□□ -1.85
MSH3P20585 RPS7P13-201ENST00000413955 498 ntBASIC3.48□□□□□ -1.85
MSH3P20585 GRM7-AS1-201ENST00000420230 430 ntTSL 3 BASIC3.48□□□□□ -1.85
MSH3P20585 AC244098.2-201ENST00000422068 99 ntBASIC3.48□□□□□ -1.85
MSH3P20585 AL021026.1-201ENST00000422841 658 ntTSL 3 BASIC3.48□□□□□ -1.85
MSH3P20585 HMGN2P31-201ENST00000432430 273 ntBASIC3.48□□□□□ -1.85
Retrieved 100 of 98,524 protein–RNA pairs in 109.5 ms