Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 UBDP1-202ENST00000457888 382 ntBASIC4.22□□□□□ -1.73
VPS4BO75351 snoU13.3-201ENST00000459441 104 ntBASIC4.22□□□□□ -1.73
VPS4BO75351 RPS26P3-201ENST00000470205 348 ntBASIC4.22□□□□□ -1.73
VPS4BO75351 UQCRHP4-201ENST00000471686 272 ntBASIC4.22□□□□□ -1.73
VPS4BO75351 AC090543.2-201ENST00000483963 348 ntBASIC4.22□□□□□ -1.73
VPS4BO75351 AC004057.1-201ENST00000485827 348 ntBASIC4.22□□□□□ -1.73
VPS4BO75351 RPL36AP51-201ENST00000487216 318 ntBASIC4.22□□□□□ -1.73
VPS4BO75351 AC079382.1-201ENST00000493346 557 ntBASIC4.22□□□□□ -1.73
VPS4BO75351 LINC01326-201ENST00000495159 755 ntTSL 2 BASIC4.22□□□□□ -1.73
VPS4BO75351 MTCYBP18-201ENST00000501056 747 ntBASIC4.22□□□□□ -1.73
VPS4BO75351 AC020893.1-201ENST00000502452 580 ntBASIC4.22□□□□□ -1.73
VPS4BO75351 C4orf33-204ENST00000502887 1126 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
VPS4BO75351 AC092673.1-201ENST00000510203 428 ntTSL 3 BASIC4.22□□□□□ -1.73
VPS4BO75351 AC008957.1-201ENST00000510740 478 ntTSL 3 BASIC4.22□□□□□ -1.73
VPS4BO75351 AC021146.1-201ENST00000511202 716 ntBASIC4.22□□□□□ -1.73
VPS4BO75351 FTH1P21-201ENST00000512179 511 ntBASIC4.22□□□□□ -1.73
VPS4BO75351 Y_RNA.704-201ENST00000516851 102 ntBASIC4.22□□□□□ -1.73
VPS4BO75351 AC023632.4-201ENST00000517783 191 ntBASIC4.22□□□□□ -1.73
VPS4BO75351 SPINK7-205ENST00000523535 299 ntTSL 2 BASIC4.22□□□□□ -1.73
VPS4BO75351 AP003385.6-201ENST00000531603 374 ntBASIC4.22□□□□□ -1.73
VPS4BO75351 SPTY2D1-AS1-203ENST00000542172 331 ntAPPRIS ALT2 TSL 1 (best) BASIC4.22□□□□□ -1.73
VPS4BO75351 OR8R1P-201ENST00000543943 764 ntBASIC4.22□□□□□ -1.73
VPS4BO75351 AC026116.1-201ENST00000551729 474 ntTSL 3 BASIC4.22□□□□□ -1.73
VPS4BO75351 AC026992.1-202ENST00000558454 421 ntTSL 3 BASIC4.22□□□□□ -1.73
VPS4BO75351 AC027514.2-201ENST00000591014 637 ntTSL 3 BASIC4.22□□□□□ -1.73
VPS4BO75351 AC245517.5-201ENST00000611529 162 ntBASIC4.22□□□□□ -1.73
VPS4BO75351 AC068506.1-202ENST00000613388 545 ntTSL 3 BASIC4.22□□□□□ -1.73
VPS4BO75351 AC013727.1-201ENST00000618581 839 ntTSL 5 BASIC4.22□□□□□ -1.73
VPS4BO75351 MIR7702-201ENST00000621931 59 ntBASIC4.22□□□□□ -1.73
VPS4BO75351 MGA-201ENST00000219905 12042 ntAPPRIS P4 TSL 5 BASIC4.22□□□□□ -1.73
VPS4BO75351 DMXL2-202ENST00000449909 7465 ntAPPRIS ALT2 TSL 1 (best) BASIC4.22□□□□□ -1.73
VPS4BO75351 RAPH1-203ENST00000374493 3909 ntAPPRIS ALT2 TSL 5 BASIC4.22□□□□□ -1.73
VPS4BO75351 UGT2A3-201ENST00000251566 2965 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
VPS4BO75351 TRDN-206ENST00000628709 1661 ntAPPRIS ALT2 TSL 1 (best) BASIC4.22□□□□□ -1.73
VPS4BO75351 TMEM71-201ENST00000356838 1993 ntAPPRIS P3 TSL 1 (best) BASIC4.22□□□□□ -1.73
VPS4BO75351 TMEM71-210ENST00000523829 1974 ntAPPRIS ALT2 TSL 5 BASIC4.22□□□□□ -1.73
VPS4BO75351 LINC01102-204ENST00000451400 3778 ntTSL 2 BASIC4.22□□□□□ -1.73
VPS4BO75351 ERICH3-AS1-202ENST00000612390 4874 ntTSL 1 (best) BASIC4.21□□□□□ -1.73
VPS4BO75351 MFF-206ENST00000392059 1710 ntTSL 5 BASIC4.21□□□□□ -1.73
VPS4BO75351 OSBPL9P4-201ENST00000371707 1800 ntBASIC4.21□□□□□ -1.74
VPS4BO75351 TBC1D31-210ENST00000521676 3256 ntTSL 5 BASIC4.21□□□□□ -1.74
VPS4BO75351 RNU6-1120P-201ENST00000362988 108 ntBASIC4.21□□□□□ -1.74
VPS4BO75351 RNU6-1322P-201ENST00000364309 107 ntBASIC4.21□□□□□ -1.74
VPS4BO75351 AL390198.1-201ENST00000376445 320 ntTSL 2 BASIC4.21□□□□□ -1.74
VPS4BO75351 KRTAP19-8-201ENST00000382822 318 ntAPPRIS P1 BASIC4.21□□□□□ -1.74
VPS4BO75351 PIGP-205ENST00000399103 656 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.74
VPS4BO75351 RAP1BP3-201ENST00000407180 549 ntBASIC4.21□□□□□ -1.74
VPS4BO75351 JKAMPP1-201ENST00000413804 919 ntBASIC4.21□□□□□ -1.74
VPS4BO75351 AL139413.1-201ENST00000421309 217 ntBASIC4.21□□□□□ -1.74
VPS4BO75351 AC007283.2-201ENST00000424739 197 ntBASIC4.21□□□□□ -1.74
VPS4BO75351 AC137499.1-201ENST00000427602 88 ntBASIC4.21□□□□□ -1.74
VPS4BO75351 LAMTOR3P1-201ENST00000428620 370 ntBASIC4.21□□□□□ -1.74
VPS4BO75351 RAC1P7-201ENST00000445367 377 ntBASIC4.21□□□□□ -1.74
VPS4BO75351 AC104688.1-201ENST00000447158 419 ntTSL 3 BASIC4.21□□□□□ -1.74
VPS4BO75351 NANOGP10-201ENST00000453325 895 ntBASIC4.21□□□□□ -1.74
VPS4BO75351 RAD23BP3-201ENST00000454157 1152 ntBASIC4.21□□□□□ -1.74
VPS4BO75351 AC123768.1-201ENST00000486285 432 ntTSL 3 BASIC4.21□□□□□ -1.74
VPS4BO75351 RPS3A-208ENST00000509736 576 ntTSL 2 BASIC4.21□□□□□ -1.74
VPS4BO75351 AC117522.1-201ENST00000509821 380 ntBASIC4.21□□□□□ -1.74
VPS4BO75351 AC108517.1-201ENST00000512546 327 ntTSL 3 BASIC4.21□□□□□ -1.74
VPS4BO75351 SNORA20.3-201ENST00000516880 132 ntBASIC4.21□□□□□ -1.74
VPS4BO75351 RN7SKP116-201ENST00000516902 319 ntBASIC4.21□□□□□ -1.74
VPS4BO75351 RNU6-1220P-201ENST00000517126 108 ntBASIC4.21□□□□□ -1.74
VPS4BO75351 AC011257.1-201ENST00000519048 281 ntTSL 3 BASIC4.21□□□□□ -1.74
VPS4BO75351 AC015468.4-201ENST00000523496 568 ntTSL 4 BASIC4.21□□□□□ -1.74
VPS4BO75351 CYCSP29-201ENST00000533731 318 ntBASIC4.21□□□□□ -1.74
VPS4BO75351 AP000462.2-203ENST00000540545 715 ntTSL 5 BASIC4.21□□□□□ -1.74
VPS4BO75351 LINC02459-201ENST00000551761 474 ntTSL 3 BASIC4.21□□□□□ -1.74
VPS4BO75351 LINC00520-201ENST00000554186 831 ntTSL 5 BASIC4.21□□□□□ -1.74
VPS4BO75351 OR4T1P-201ENST00000554933 911 ntBASIC4.21□□□□□ -1.74
VPS4BO75351 AC009145.3-201ENST00000567386 476 ntTSL 3 BASIC4.21□□□□□ -1.74
VPS4BO75351 AP001180.2-201ENST00000579413 422 ntTSL 5 BASIC4.21□□□□□ -1.74
VPS4BO75351 AL157938.2-203ENST00000589540 931 ntTSL 5 BASIC4.21□□□□□ -1.74
VPS4BO75351 AL157938.2-204ENST00000589667 826 ntTSL 5 BASIC4.21□□□□□ -1.74
VPS4BO75351 AC011451.2-201ENST00000604303 598 ntBASIC4.21□□□□□ -1.74
VPS4BO75351 AC010680.4-201ENST00000605334 543 ntBASIC4.21□□□□□ -1.74
VPS4BO75351 AL136363.1-201ENST00000605349 337 ntBASIC4.21□□□□□ -1.74
VPS4BO75351 AC008162.2-201ENST00000613352 291 ntAPPRIS P1 TSL 3 BASIC4.21□□□□□ -1.74
VPS4BO75351 AP003122.6-201ENST00000623831 495 ntBASIC4.21□□□□□ -1.74
VPS4BO75351 ELAVL4-206ENST00000371827 3775 ntAPPRIS ALT1 TSL 1 (best) BASIC4.21□□□□□ -1.74
VPS4BO75351 DEPDC1-202ENST00000456315 5331 ntTSL 1 (best) BASIC4.21□□□□□ -1.74
VPS4BO75351 BRCA2-201ENST00000380152 11986 ntAPPRIS P1 TSL 5 BASIC4.2□□□□□ -1.74
VPS4BO75351 DDX60L-201ENST00000260184 6754 ntAPPRIS P1 TSL 5 BASIC4.2□□□□□ -1.74
VPS4BO75351 SCN3A-201ENST00000283254 9091 ntAPPRIS P3 TSL 1 (best) BASIC4.2□□□□□ -1.74
VPS4BO75351 AK9-202ENST00000355283 2499 ntTSL 1 (best) BASIC4.2□□□□□ -1.74
VPS4BO75351 THEMIS-204ENST00000537166 3830 ntAPPRIS ALT2 TSL 2 BASIC4.2□□□□□ -1.74
VPS4BO75351 FAM111B-202ENST00000411426 3344 ntTSL 4 BASIC4.2□□□□□ -1.74
VPS4BO75351 RFX7-201ENST00000559447 10426 ntAPPRIS P5 TSL 5 BASIC4.2□□□□□ -1.74
VPS4BO75351 GTDC1-202ENST00000344850 2607 ntAPPRIS P1 TSL 5 BASIC4.2□□□□□ -1.74
VPS4BO75351 OR51F2-201ENST00000322110 993 ntAPPRIS ALT2 BASIC4.2□□□□□ -1.74
VPS4BO75351 Y_RNA.295-201ENST00000364918 102 ntBASIC4.2□□□□□ -1.74
VPS4BO75351 Y_RNA.493-201ENST00000384422 102 ntBASIC4.2□□□□□ -1.74
VPS4BO75351 SNORD66.1-201ENST00000391230 76 ntBASIC4.2□□□□□ -1.74
VPS4BO75351 AC005162.2-201ENST00000411479 578 ntTSL 4 BASIC4.2□□□□□ -1.74
VPS4BO75351 RPL23AP26-201ENST00000412728 464 ntBASIC4.2□□□□□ -1.74
VPS4BO75351 RPS15AP12-201ENST00000419498 388 ntBASIC4.2□□□□□ -1.74
VPS4BO75351 AL353612.1-201ENST00000428769 465 ntTSL 3 BASIC4.2□□□□□ -1.74
VPS4BO75351 AL589986.2-201ENST00000429352 397 ntTSL 2 BASIC4.2□□□□□ -1.74
VPS4BO75351 AC239803.1-202ENST00000432038 590 ntTSL 1 (best) BASIC4.2□□□□□ -1.74
VPS4BO75351 AL136084.2-202ENST00000433997 353 ntTSL 2 BASIC4.2□□□□□ -1.74
Retrieved 100 of 98,524 protein–RNA pairs in 117.6 ms