Protein–RNA interactions for Protein: O75056

SDC3, Syndecan-3, humanhuman

Predictions only

Length 442 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3O75056 Y_RNA.311-201ENST00000365068 96 ntBASIC3.12□□□□□ -1.91
SDC3O75056 RNU6-8-201ENST00000365467 107 ntBASIC3.12□□□□□ -1.91
SDC3O75056 Y_RNA.510-201ENST00000384511 114 ntBASIC3.12□□□□□ -1.91
SDC3O75056 RNU1-101P-201ENST00000391171 127 ntBASIC3.12□□□□□ -1.91
SDC3O75056 LINC00845-201ENST00000417931 696 ntTSL 2 BASIC3.12□□□□□ -1.91
SDC3O75056 RPL7P30-201ENST00000420888 709 ntBASIC3.12□□□□□ -1.91
SDC3O75056 AL021026.1-201ENST00000422841 658 ntTSL 3 BASIC3.12□□□□□ -1.91
SDC3O75056 AL451127.1-201ENST00000422909 624 ntTSL 3 BASIC3.12□□□□□ -1.91
SDC3O75056 TRIAP1P1-201ENST00000427062 225 ntBASIC3.12□□□□□ -1.91
SDC3O75056 RPL23AP82-202ENST00000427528 469 ntBASIC3.12□□□□□ -1.91
SDC3O75056 AC004866.2-201ENST00000438285 481 ntBASIC3.12□□□□□ -1.91
SDC3O75056 AL161937.1-201ENST00000444478 425 ntTSL 3 BASIC3.12□□□□□ -1.91
SDC3O75056 AL513422.1-201ENST00000449531 383 ntTSL 2 BASIC3.12□□□□□ -1.91
SDC3O75056 LINC01810-201ENST00000450397 411 ntTSL 3 BASIC3.12□□□□□ -1.91
SDC3O75056 NAALADL2-AS3-202ENST00000453180 413 ntTSL 3 BASIC3.12□□□□□ -1.91
SDC3O75056 CENPBD1P1-201ENST00000464061 469 ntBASIC3.12□□□□□ -1.91
SDC3O75056 AC093278.1-201ENST00000494700 600 ntBASIC3.12□□□□□ -1.91
SDC3O75056 RNU6-415P-201ENST00000516252 97 ntBASIC3.12□□□□□ -1.91
SDC3O75056 RNU6-711P-201ENST00000517255 106 ntBASIC3.12□□□□□ -1.91
SDC3O75056 PLCZ1-203ENST00000534932 525 ntTSL 4 BASIC3.12□□□□□ -1.91
SDC3O75056 MED28P6-201ENST00000558776 231 ntBASIC3.12□□□□□ -1.91
SDC3O75056 AC009117.2-201ENST00000565374 504 ntTSL 3 BASIC3.12□□□□□ -1.91
SDC3O75056 MAGOH2P-202ENST00000584384 429 ntBASIC3.12□□□□□ -1.91
SDC3O75056 THRA1/BTR-203ENST00000604191 571 ntTSL 4 BASIC3.12□□□□□ -1.91
SDC3O75056 AC009220.3-201ENST00000604318 586 ntBASIC3.12□□□□□ -1.91
SDC3O75056 AL033523.1-201ENST00000605153 153 ntBASIC3.12□□□□□ -1.91
SDC3O75056 MIR7106-201ENST00000612419 65 ntBASIC3.12□□□□□ -1.91
SDC3O75056 AL050303.3-201ENST00000613704 284 ntBASIC3.12□□□□□ -1.91
SDC3O75056 AC002076.2-201ENST00000617362 122 ntBASIC3.12□□□□□ -1.91
SDC3O75056 JMJD1C-210ENST00000542921 8149 ntAPPRIS ALT2 TSL 1 (best) BASIC3.12□□□□□ -1.91
SDC3O75056 CDK1-201ENST00000316629 1733 ntTSL 5 BASIC3.12□□□□□ -1.91
SDC3O75056 BAZ2B-202ENST00000343439 2364 ntTSL 5 BASIC3.12□□□□□ -1.91
SDC3O75056 OR5BR1P-201ENST00000524992 1330 ntBASIC3.12□□□□□ -1.91
SDC3O75056 AC017071.1-201ENST00000564407 2204 ntBASIC3.12□□□□□ -1.91
SDC3O75056 KNL1-202ENST00000399668 7607 ntAPPRIS ALT2 TSL 1 (best) BASIC3.12□□□□□ -1.91
SDC3O75056 DOPEY1-203ENST00000369739 7743 ntAPPRIS ALT1 TSL 1 (best) BASIC3.12□□□□□ -1.91
SDC3O75056 PROS1-203ENST00000407433 3335 ntTSL 1 (best) BASIC3.11□□□□□ -1.91
SDC3O75056 OR4G11P-202ENST00000642116 1414 ntBASIC3.11□□□□□ -1.91
SDC3O75056 C5orf51-201ENST00000381647 5241 ntAPPRIS P1 TSL 1 (best) BASIC3.11□□□□□ -1.91
SDC3O75056 LINC00862-202ENST00000367356 759 ntTSL 3 BASIC3.11□□□□□ -1.91
SDC3O75056 AL354719.1-201ENST00000406535 843 ntBASIC3.11□□□□□ -1.91
SDC3O75056 RNA5SP229-201ENST00000410809 99 ntBASIC3.11□□□□□ -1.91
SDC3O75056 AC106873.1-201ENST00000420664 459 ntTSL 3 BASIC3.11□□□□□ -1.91
SDC3O75056 AC097662.1-205ENST00000433324 241 ntTSL 5 BASIC3.11□□□□□ -1.91
SDC3O75056 ATP5F1P1-201ENST00000433775 569 ntBASIC3.11□□□□□ -1.91
SDC3O75056 AL356475.1-201ENST00000440321 341 ntTSL 5 BASIC3.11□□□□□ -1.91
SDC3O75056 AC005297.2-201ENST00000450430 606 ntBASIC3.11□□□□□ -1.91
SDC3O75056 ITCH-AS1-201ENST00000454205 299 ntTSL 5 BASIC3.11□□□□□ -1.91
SDC3O75056 RPS4XP2-201ENST00000458402 793 ntBASIC3.11□□□□□ -1.91
SDC3O75056 RNA5SP310-201ENST00000459084 116 ntBASIC3.11□□□□□ -1.91
SDC3O75056 GUCA1C-203ENST00000471108 633 ntTSL 2 BASIC3.11□□□□□ -1.91
SDC3O75056 MTCYBP17-201ENST00000503579 789 ntBASIC3.11□□□□□ -1.91
SDC3O75056 AC097462.2-201ENST00000504623 481 ntBASIC3.11□□□□□ -1.91
SDC3O75056 AC093895.1-203ENST00000506814 591 ntTSL 5 BASIC3.11□□□□□ -1.91
SDC3O75056 AP001372.4-201ENST00000524889 472 ntBASIC3.11□□□□□ -1.91
SDC3O75056 LINC02378-201ENST00000540399 1003 ntTSL 5 BASIC3.11□□□□□ -1.91
SDC3O75056 CR383656.7-201ENST00000548164 174 ntBASIC3.11□□□□□ -1.91
SDC3O75056 SETP7-201ENST00000552169 453 ntBASIC3.11□□□□□ -1.91
SDC3O75056 NBEAP1-201ENST00000554452 979 ntBASIC3.11□□□□□ -1.91
SDC3O75056 PSMA4-206ENST00000558341 719 ntTSL 5 BASIC3.11□□□□□ -1.91
SDC3O75056 AC018371.1-201ENST00000584560 640 ntTSL 3 BASIC3.11□□□□□ -1.91
SDC3O75056 AC006504.3-201ENST00000586818 523 ntBASIC3.11□□□□□ -1.91
SDC3O75056 uc_338.25-201ENST00000613756 156 ntBASIC3.11□□□□□ -1.91
SDC3O75056 NPPA-AS1_3.1-201ENST00000617059 108 ntBASIC3.11□□□□□ -1.91
SDC3O75056 AC006111.3-201ENST00000622137 383 ntBASIC3.11□□□□□ -1.91
SDC3O75056 AC099506.2-201ENST00000623074 221 ntBASIC3.11□□□□□ -1.91
SDC3O75056 NBPF20-201ENST00000369373 18760 ntAPPRIS ALT2 TSL 5 BASIC3.11□□□□□ -1.91
SDC3O75056 ANGPTL1-201ENST00000234816 3348 ntAPPRIS P1 TSL 1 (best) BASIC3.1□□□□□ -1.91
SDC3O75056 SAMD3-214ENST00000532763 3690 ntTSL 5 BASIC3.1□□□□□ -1.91
SDC3O75056 C8orf59-201ENST00000321777 325 ntTSL 1 (best) BASIC3.1□□□□□ -1.91
SDC3O75056 MIR30E-201ENST00000362104 92 ntBASIC3.1□□□□□ -1.91
SDC3O75056 RNU6-1155P-201ENST00000363554 107 ntBASIC3.1□□□□□ -1.91
SDC3O75056 SNORA5B-201ENST00000363786 132 ntBASIC3.1□□□□□ -1.91
SDC3O75056 MLLT3-201ENST00000380321 708 ntTSL 3 BASIC3.1□□□□□ -1.91
SDC3O75056 MIR1289-1-201ENST00000408836 144 ntBASIC3.1□□□□□ -1.91
SDC3O75056 RNA5SP31-201ENST00000411144 127 ntBASIC3.1□□□□□ -1.91
SDC3O75056 MYO16-AS2-201ENST00000412809 436 ntTSL 3 BASIC3.1□□□□□ -1.91
SDC3O75056 RPS15AP38-201ENST00000413110 372 ntBASIC3.1□□□□□ -1.91
SDC3O75056 AL592310.1-201ENST00000414330 671 ntBASIC3.1□□□□□ -1.91
SDC3O75056 AL691426.1-201ENST00000416507 509 ntTSL 2 BASIC3.1□□□□□ -1.91
SDC3O75056 AC007742.1-201ENST00000425789 329 ntBASIC3.1□□□□□ -1.91
SDC3O75056 AL590233.1-201ENST00000430017 456 ntBASIC3.1□□□□□ -1.91
SDC3O75056 ELOCP26-201ENST00000436067 329 ntBASIC3.1□□□□□ -1.91
SDC3O75056 GYG2-AS1-201ENST00000445107 515 ntTSL 5 BASIC3.1□□□□□ -1.91
SDC3O75056 ARPC3P5-201ENST00000448802 534 ntBASIC3.1□□□□□ -1.91
SDC3O75056 AC104308.1-201ENST00000454621 333 ntBASIC3.1□□□□□ -1.91
SDC3O75056 LRRC70-203ENST00000491184 703 ntTSL 3 BASIC3.1□□□□□ -1.91
SDC3O75056 AC023424.2-201ENST00000493479 777 ntBASIC3.1□□□□□ -1.91
SDC3O75056 AC114967.1-201ENST00000504890 259 ntBASIC3.1□□□□□ -1.91
SDC3O75056 AC099499.1-201ENST00000505040 558 ntTSL 3 BASIC3.1□□□□□ -1.91
SDC3O75056 XKRY-201ENST00000510392 1100 ntBASIC3.1□□□□□ -1.91
SDC3O75056 AC116353.3-201ENST00000511215 249 ntBASIC3.1□□□□□ -1.91
SDC3O75056 RNY4P37-201ENST00000516225 96 ntBASIC3.1□□□□□ -1.91
SDC3O75056 RNU4ATAC3P-201ENST00000516699 126 ntBASIC3.1□□□□□ -1.91
SDC3O75056 RNA5SP380-201ENST00000517190 98 ntBASIC3.1□□□□□ -1.91
SDC3O75056 AC068657.1-201ENST00000520807 306 ntBASIC3.1□□□□□ -1.91
SDC3O75056 CTHRC1-204ENST00000520880 560 ntTSL 4 BASIC3.1□□□□□ -1.91
SDC3O75056 XIRP2-AS1-201ENST00000525330 776 ntTSL 3 BASIC3.1□□□□□ -1.91
SDC3O75056 DEFB130C-201ENST00000528518 237 ntTSL 1 (best) BASIC3.1□□□□□ -1.91
SDC3O75056 AP000790.2-201ENST00000534388 522 ntTSL 3 BASIC3.1□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 76.8 ms