Protein–RNA interactions for Protein: Q9Y239

NOD1, Nucleotide-binding oligomerization domain-containing protein 1, humanhuman

Predictions only

Length 953 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NOD1Q9Y239 AC079799.1-201ENST00000430696 331 ntTSL 3 BASIC5.81□□□□□ -1.48
NOD1Q9Y239 TEX41-205ENST00000431734 529 ntTSL 4 BASIC5.81□□□□□ -1.48
NOD1Q9Y239 AC078993.1-203ENST00000435789 1037 ntTSL 5 BASIC5.81□□□□□ -1.48
NOD1Q9Y239 RHOT1P3-201ENST00000436571 331 ntBASIC5.81□□□□□ -1.48
NOD1Q9Y239 FAR2P1-203ENST00000440931 187 ntTSL 2 BASIC5.81□□□□□ -1.48
NOD1Q9Y239 RN7SL738P-201ENST00000470264 297 ntBASIC5.81□□□□□ -1.48
NOD1Q9Y239 AC084198.1-201ENST00000477747 402 ntBASIC5.81□□□□□ -1.48
NOD1Q9Y239 PPP1R11P1-201ENST00000486095 376 ntBASIC5.81□□□□□ -1.48
NOD1Q9Y239 AF213884.1-201ENST00000488102 463 ntBASIC5.81□□□□□ -1.48
NOD1Q9Y239 AC020651.1-201ENST00000490324 360 ntTSL 3 BASIC5.81□□□□□ -1.48
NOD1Q9Y239 LINC01340-201ENST00000504012 724 ntTSL 3 BASIC5.81□□□□□ -1.48
NOD1Q9Y239 AC106894.1-201ENST00000511735 451 ntTSL 5 BASIC5.81□□□□□ -1.48
NOD1Q9Y239 SPRY4-AS1-205ENST00000514303 152 ntTSL 3 BASIC5.81□□□□□ -1.48
NOD1Q9Y239 RN7SKP60-201ENST00000516985 239 ntBASIC5.81□□□□□ -1.48
NOD1Q9Y239 AP005902.1-201ENST00000521358 186 ntBASIC5.81□□□□□ -1.48
NOD1Q9Y239 SNHG1-211ENST00000539921 1071 ntTSL 2 BASIC5.81□□□□□ -1.48
NOD1Q9Y239 AC127894.1-201ENST00000548266 851 ntTSL 3 BASIC5.81□□□□□ -1.48
NOD1Q9Y239 PPIAL4F-202ENST00000581138 660 ntAPPRIS P1 BASIC5.81□□□□□ -1.48
NOD1Q9Y239 AC005899.2-201ENST00000584353 90 ntBASIC5.81□□□□□ -1.48
NOD1Q9Y239 AC067852.3-201ENST00000589177 561 ntBASIC5.81□□□□□ -1.48
NOD1Q9Y239 AC007159.1-201ENST00000566529 4706 ntBASIC5.81□□□□□ -1.48
NOD1Q9Y239 D21S2088E-201ENST00000262354 1725 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
NOD1Q9Y239 PRRC1-201ENST00000296666 4699 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
NOD1Q9Y239 SAGE2P-201ENST00000420011 2126 ntBASIC5.81□□□□□ -1.48
NOD1Q9Y239 FILIP1-201ENST00000237172 4580 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
NOD1Q9Y239 AP005435.3-201ENST00000531260 3198 ntBASIC5.81□□□□□ -1.48
NOD1Q9Y239 OR4E2-202ENST00000641524 2855 ntAPPRIS P1 BASIC5.81□□□□□ -1.48
NOD1Q9Y239 ZNF33B-208ENST00000613419 5843 ntAPPRIS ALT2 TSL 5 BASIC5.8□□□□□ -1.48
NOD1Q9Y239 CPNE8-202ENST00000360449 1757 ntAPPRIS ALT2 TSL 2 BASIC5.8□□□□□ -1.48
NOD1Q9Y239 TNFSF4-202ENST00000367718 3429 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
NOD1Q9Y239 FRAS1-207ENST00000512123 15624 ntAPPRIS P1 TSL 5 BASIC5.8□□□□□ -1.48
NOD1Q9Y239 TTC41P-205ENST00000551270 3963 ntBASIC5.8□□□□□ -1.48
NOD1Q9Y239 RUFY3-202ENST00000381006 3098 ntAPPRIS P1 TSL 5 BASIC5.8□□□□□ -1.48
NOD1Q9Y239 AC092681.1-201ENST00000297369 291 ntBASIC5.8□□□□□ -1.48
NOD1Q9Y239 RNU6-1059P-201ENST00000363752 98 ntBASIC5.8□□□□□ -1.48
NOD1Q9Y239 Y_RNA.485-201ENST00000384395 102 ntBASIC5.8□□□□□ -1.48
NOD1Q9Y239 RNU6-1109P-201ENST00000391187 107 ntBASIC5.8□□□□□ -1.48
NOD1Q9Y239 RNU2-23P-201ENST00000410545 195 ntBASIC5.8□□□□□ -1.48
NOD1Q9Y239 MOBP-203ENST00000415443 577 ntAPPRIS ALT2 TSL 4 BASIC5.8□□□□□ -1.48
NOD1Q9Y239 AL160162.1-202ENST00000417654 244 ntTSL 3 BASIC5.8□□□□□ -1.48
NOD1Q9Y239 AC079790.1-201ENST00000420365 507 ntTSL 3 BASIC5.8□□□□□ -1.48
NOD1Q9Y239 AC097713.2-201ENST00000430199 356 ntBASIC5.8□□□□□ -1.48
NOD1Q9Y239 AL390067.1-201ENST00000440009 420 ntTSL 3 BASIC5.8□□□□□ -1.48
NOD1Q9Y239 AC068489.1-201ENST00000453706 261 ntTSL 5 BASIC5.8□□□□□ -1.48
NOD1Q9Y239 RN7SL189P-201ENST00000468631 289 ntBASIC5.8□□□□□ -1.48
NOD1Q9Y239 CREM-238ENST00000488741 651 ntTSL 2 BASIC5.8□□□□□ -1.48
NOD1Q9Y239 RN7SKP67-201ENST00000515905 235 ntBASIC5.8□□□□□ -1.48
NOD1Q9Y239 AC009435.1-201ENST00000519555 574 ntTSL 4 BASIC5.8□□□□□ -1.48
NOD1Q9Y239 AC022790.1-201ENST00000522872 204 ntBASIC5.8□□□□□ -1.48
NOD1Q9Y239 AC069437.1-201ENST00000551372 512 ntTSL 4 BASIC5.8□□□□□ -1.48
NOD1Q9Y239 LINC00871-201ENST00000555246 408 ntTSL 5 BASIC5.8□□□□□ -1.48
NOD1Q9Y239 AC007922.3-201ENST00000581648 543 ntTSL 3 BASIC5.8□□□□□ -1.48
NOD1Q9Y239 U2.1-201ENST00000618978 145 ntBASIC5.8□□□□□ -1.48
NOD1Q9Y239 uc_338.7-201ENST00000621834 124 ntBASIC5.8□□□□□ -1.48
NOD1Q9Y239 NPSR1-AS1-202ENST00000419766 4821 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
NOD1Q9Y239 DDHD2-202ENST00000517385 4113 ntTSL 2 BASIC5.8□□□□□ -1.48
NOD1Q9Y239 FAM135A-202ENST00000361499 5042 ntAPPRIS ALT1 TSL 1 (best) BASIC5.8□□□□□ -1.48
NOD1Q9Y239 AC109446.4-201ENST00000623235 2755 ntBASIC5.79□□□□□ -1.48
NOD1Q9Y239 FANCI-201ENST00000300027 4713 ntAPPRIS P3 TSL 5 BASIC5.79□□□□□ -1.48
NOD1Q9Y239 GPR18-203ENST00000397473 1660 ntAPPRIS P1 TSL 1 (best) BASIC5.79□□□□□ -1.48
NOD1Q9Y239 PRG4-204ENST00000445192 5044 ntAPPRIS P3 TSL 5 BASIC5.79□□□□□ -1.48
NOD1Q9Y239 MAP2-205ENST00000392194 5303 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
NOD1Q9Y239 U3.3-201ENST00000362986 216 ntBASIC5.79□□□□□ -1.48
NOD1Q9Y239 RNU6ATAC16P-201ENST00000408591 138 ntBASIC5.79□□□□□ -1.48
NOD1Q9Y239 RNU6-55P-201ENST00000411092 107 ntBASIC5.79□□□□□ -1.48
NOD1Q9Y239 FAR2P2-201ENST00000413041 594 ntBASIC5.79□□□□□ -1.48
NOD1Q9Y239 AC241644.2-201ENST00000426504 480 ntTSL 3 BASIC5.79□□□□□ -1.48
NOD1Q9Y239 LINC01870-201ENST00000427042 390 ntTSL 3 BASIC5.79□□□□□ -1.48
NOD1Q9Y239 AC004866.2-201ENST00000438285 481 ntBASIC5.79□□□□□ -1.48
NOD1Q9Y239 AC016292.1-201ENST00000438344 235 ntTSL 3 BASIC5.79□□□□□ -1.48
NOD1Q9Y239 AC007327.2-201ENST00000440788 457 ntTSL 3 BASIC5.79□□□□□ -1.48
NOD1Q9Y239 NOTCH2P1-201ENST00000443481 624 ntBASIC5.79□□□□□ -1.48
NOD1Q9Y239 AC073325.1-201ENST00000443714 542 ntTSL 4 BASIC5.79□□□□□ -1.48
NOD1Q9Y239 AC096644.1-201ENST00000446169 390 ntTSL 3 BASIC5.79□□□□□ -1.48
NOD1Q9Y239 AC009220.1-201ENST00000451614 275 ntBASIC5.79□□□□□ -1.48
NOD1Q9Y239 CYP4F62P-203ENST00000455215 552 ntTSL 4 BASIC5.79□□□□□ -1.48
NOD1Q9Y239 AC104564.1-201ENST00000493028 407 ntBASIC5.79□□□□□ -1.48
NOD1Q9Y239 OR51K1P-201ENST00000510214 950 ntBASIC5.79□□□□□ -1.48
NOD1Q9Y239 AC092436.3-201ENST00000511788 257 ntBASIC5.79□□□□□ -1.48
NOD1Q9Y239 SKP1-203ENST00000517625 876 ntAPPRIS P4 TSL 3 BASIC5.79□□□□□ -1.48
NOD1Q9Y239 AC002563.1-201ENST00000535109 451 ntTSL 3 BASIC5.79□□□□□ -1.48
NOD1Q9Y239 AC091516.1-201ENST00000549191 703 ntBASIC5.79□□□□□ -1.48
NOD1Q9Y239 AC018904.1-201ENST00000560594 542 ntTSL 3 BASIC5.79□□□□□ -1.48
NOD1Q9Y239 AC012119.1-201ENST00000603184 222 ntBASIC5.79□□□□□ -1.48
NOD1Q9Y239 AL450472.3-201ENST00000615578 367 ntBASIC5.79□□□□□ -1.48
NOD1Q9Y239 AASDH-203ENST00000502617 3004 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
NOD1Q9Y239 SCRG1-201ENST00000296506 4420 ntAPPRIS P1 TSL 1 (best) BASIC5.79□□□□□ -1.48
NOD1Q9Y239 MDN1-201ENST00000369393 18413 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
NOD1Q9Y239 HDAC9-203ENST00000406072 4102 ntTSL 5 BASIC5.78□□□□□ -1.48
NOD1Q9Y239 STIL-204ENST00000396221 4558 ntAPPRIS ALT2 TSL 1 (best) BASIC5.78□□□□□ -1.48
NOD1Q9Y239 DST-205ENST00000370765 8999 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
NOD1Q9Y239 DCX-202ENST00000358070 9405 ntAPPRIS ALT1 TSL 1 (best) BASIC5.78□□□□□ -1.48
NOD1Q9Y239 ZNF782-208ENST00000535338 3296 ntAPPRIS P1 TSL 3 BASIC5.78□□□□□ -1.48
NOD1Q9Y239 SOX2-OT-218ENST00000498731 3576 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
NOD1Q9Y239 OR51A4-201ENST00000380373 1002 ntAPPRIS P1 BASIC5.78□□□□□ -1.48
NOD1Q9Y239 RNU6-45P-201ENST00000384471 107 ntBASIC5.78□□□□□ -1.48
NOD1Q9Y239 MIR141-201ENST00000384975 95 ntBASIC5.78□□□□□ -1.48
NOD1Q9Y239 RNU6-823P-201ENST00000391042 103 ntBASIC5.78□□□□□ -1.48
NOD1Q9Y239 RPL21P67-201ENST00000402896 478 ntBASIC5.78□□□□□ -1.48
NOD1Q9Y239 RNU4-78P-201ENST00000410940 126 ntBASIC5.78□□□□□ -1.48
Retrieved 100 of 98,524 protein–RNA pairs in 110.8 ms