Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 TRIQK-212ENST00000520686 1808 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
CCDC39Q9UFE4 ADAMTS9-AS1-203ENST00000471990 1606 ntTSL 2 BASIC5.41□□□□□ -1.54
CCDC39Q9UFE4 INTS6P1-201ENST00000504674 2530 ntBASIC5.41□□□□□ -1.54
CCDC39Q9UFE4 OR56A3-205ENST00000641905 4595 ntAPPRIS P1 BASIC5.41□□□□□ -1.54
CCDC39Q9UFE4 CENPE-202ENST00000380026 8241 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
CCDC39Q9UFE4 OSBPL11-201ENST00000296220 4191 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
CCDC39Q9UFE4 TDO2-208ENST00000536354 1701 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
CCDC39Q9UFE4 STK33-208ENST00000447869 3103 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
CCDC39Q9UFE4 RNU6-1115P-201ENST00000362490 106 ntBASIC5.41□□□□□ -1.54
CCDC39Q9UFE4 RNA5SP123-201ENST00000363244 119 ntBASIC5.41□□□□□ -1.54
CCDC39Q9UFE4 OR52E6-202ENST00000379946 954 ntBASIC5.41□□□□□ -1.54
CCDC39Q9UFE4 Y_RNA.414-201ENST00000384011 101 ntBASIC5.41□□□□□ -1.54
CCDC39Q9UFE4 DEFB113-201ENST00000398718 249 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
CCDC39Q9UFE4 FLJ27354-201ENST00000415584 788 ntTSL 2 BASIC5.41□□□□□ -1.54
CCDC39Q9UFE4 RPL9P9-201ENST00000418824 636 ntTSL 2 BASIC5.41□□□□□ -1.54
CCDC39Q9UFE4 AC005062.1-206ENST00000424516 710 ntTSL 3 BASIC5.41□□□□□ -1.54
CCDC39Q9UFE4 RPS26P47-201ENST00000427219 348 ntBASIC5.41□□□□□ -1.54
CCDC39Q9UFE4 NRBF2P3-201ENST00000432731 865 ntBASIC5.41□□□□□ -1.54
CCDC39Q9UFE4 AC119618.1-201ENST00000434191 222 ntBASIC5.41□□□□□ -1.54
CCDC39Q9UFE4 HMGB1P12-201ENST00000438594 598 ntBASIC5.41□□□□□ -1.54
CCDC39Q9UFE4 AC012070.1-201ENST00000442062 427 ntTSL 3 BASIC5.41□□□□□ -1.54
CCDC39Q9UFE4 RPL21P23-201ENST00000446654 460 ntBASIC5.41□□□□□ -1.54
CCDC39Q9UFE4 RPL7L1P1-201ENST00000448259 785 ntBASIC5.41□□□□□ -1.54
CCDC39Q9UFE4 AL603839.1-201ENST00000453437 432 ntTSL 2 BASIC5.41□□□□□ -1.54
CCDC39Q9UFE4 AC104308.1-201ENST00000454621 333 ntBASIC5.41□□□□□ -1.54
CCDC39Q9UFE4 AC108022.1-201ENST00000493466 478 ntBASIC5.41□□□□□ -1.54
CCDC39Q9UFE4 ANKRD36B-207ENST00000497329 649 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
CCDC39Q9UFE4 LINC01327-201ENST00000498413 535 ntTSL 3 BASIC5.41□□□□□ -1.54
CCDC39Q9UFE4 RNU6-1143P-201ENST00000516125 104 ntBASIC5.41□□□□□ -1.54
CCDC39Q9UFE4 RNU6-714P-201ENST00000516963 103 ntBASIC5.41□□□□□ -1.54
CCDC39Q9UFE4 AC091163.1-201ENST00000524012 605 ntTSL 4 BASIC5.41□□□□□ -1.54
CCDC39Q9UFE4 MS4A7-208ENST00000530234 730 ntTSL 3 BASIC5.41□□□□□ -1.54
CCDC39Q9UFE4 MIR5186-201ENST00000577504 120 ntBASIC5.41□□□□□ -1.54
CCDC39Q9UFE4 MIR5690-201ENST00000583739 73 ntBASIC5.41□□□□□ -1.54
CCDC39Q9UFE4 AC098848.2-201ENST00000588023 330 ntBASIC5.41□□□□□ -1.54
CCDC39Q9UFE4 AC012313.1-202ENST00000597309 423 ntTSL 3 BASIC5.41□□□□□ -1.54
CCDC39Q9UFE4 AC016727.2-201ENST00000603988 621 ntBASIC5.41□□□□□ -1.54
CCDC39Q9UFE4 AL592436.1-201ENST00000605135 558 ntBASIC5.41□□□□□ -1.54
CCDC39Q9UFE4 AC007546.1-201ENST00000619452 559 ntBASIC5.41□□□□□ -1.54
CCDC39Q9UFE4 LUZP2-207ENST00000533227 5016 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
CCDC39Q9UFE4 GHR-202ENST00000357703 4316 ntTSL 5 BASIC5.41□□□□□ -1.54
CCDC39Q9UFE4 GHR-213ENST00000622294 4312 ntTSL 5 BASIC5.41□□□□□ -1.54
CCDC39Q9UFE4 SCN1A-210ENST00000635776 10107 ntTSL 5 BASIC5.41□□□□□ -1.54
CCDC39Q9UFE4 C15orf41-212ENST00000567389 2618 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
CCDC39Q9UFE4 POU2F1-206ENST00000429375 13651 ntAPPRIS ALT2 TSL 2 BASIC5.4□□□□□ -1.54
CCDC39Q9UFE4 AC087190.4-201ENST00000574616 8334 ntBASIC5.4□□□□□ -1.54
CCDC39Q9UFE4 NUP35-203ENST00000409798 1470 ntTSL 2 BASIC5.4□□□□□ -1.54
CCDC39Q9UFE4 SUPT16HP1-201ENST00000537175 3133 ntBASIC5.4□□□□□ -1.54
CCDC39Q9UFE4 RNU6-251P-201ENST00000363235 104 ntBASIC5.4□□□□□ -1.54
CCDC39Q9UFE4 RNU6-522P-201ENST00000364497 107 ntBASIC5.4□□□□□ -1.54
CCDC39Q9UFE4 Y_RNA.364-201ENST00000365532 101 ntBASIC5.4□□□□□ -1.54
CCDC39Q9UFE4 AL158212.2-201ENST00000369391 460 ntTSL 3 BASIC5.4□□□□□ -1.54
CCDC39Q9UFE4 SNORA68.2-201ENST00000391263 128 ntBASIC5.4□□□□□ -1.54
CCDC39Q9UFE4 MEIG1-202ENST00000407572 625 ntAPPRIS P1 TSL 2 BASIC5.4□□□□□ -1.54
CCDC39Q9UFE4 RNU2-28P-201ENST00000410457 189 ntBASIC5.4□□□□□ -1.54
CCDC39Q9UFE4 RN7SKP216-201ENST00000411050 312 ntBASIC5.4□□□□□ -1.54
CCDC39Q9UFE4 Z74021.1-201ENST00000423610 407 ntBASIC5.4□□□□□ -1.54
CCDC39Q9UFE4 AC007566.1-201ENST00000427458 643 ntTSL 5 BASIC5.4□□□□□ -1.54
CCDC39Q9UFE4 LINC00415-201ENST00000439079 435 ntTSL 3 BASIC5.4□□□□□ -1.54
CCDC39Q9UFE4 RPS7P5-201ENST00000441482 581 ntBASIC5.4□□□□□ -1.54
CCDC39Q9UFE4 LINC00529-201ENST00000443854 241 ntTSL 2 BASIC5.4□□□□□ -1.54
CCDC39Q9UFE4 AC079781.2-201ENST00000446424 169 ntBASIC5.4□□□□□ -1.54
CCDC39Q9UFE4 AC019155.3-201ENST00000454957 600 ntTSL 2 BASIC5.4□□□□□ -1.54
CCDC39Q9UFE4 AC006512.1-201ENST00000468816 291 ntBASIC5.4□□□□□ -1.54
CCDC39Q9UFE4 AC128713.1-201ENST00000471495 306 ntBASIC5.4□□□□□ -1.54
CCDC39Q9UFE4 AC012158.1-204ENST00000483430 465 ntBASIC5.4□□□□□ -1.54
CCDC39Q9UFE4 AC015911.1-201ENST00000495111 156 ntBASIC5.4□□□□□ -1.54
CCDC39Q9UFE4 HMGB3P17-201ENST00000504195 649 ntBASIC5.4□□□□□ -1.54
CCDC39Q9UFE4 CSN1S1-203ENST00000507763 597 ntAPPRIS ALT2 TSL 5 BASIC5.4□□□□□ -1.54
CCDC39Q9UFE4 PCAT4-202ENST00000514836 373 ntTSL 3 BASIC5.4□□□□□ -1.54
CCDC39Q9UFE4 LINC02492-204ENST00000515660 584 ntTSL 2 BASIC5.4□□□□□ -1.54
CCDC39Q9UFE4 RN7SKP24-201ENST00000515888 284 ntBASIC5.4□□□□□ -1.54
CCDC39Q9UFE4 RNA5SP154-201ENST00000516193 111 ntBASIC5.4□□□□□ -1.54
CCDC39Q9UFE4 RNU4ATAC8P-201ENST00000516196 109 ntBASIC5.4□□□□□ -1.54
CCDC39Q9UFE4 RNU6-273P-201ENST00000516937 96 ntBASIC5.4□□□□□ -1.54
CCDC39Q9UFE4 AC069113.2-201ENST00000517735 359 ntTSL 3 BASIC5.4□□□□□ -1.54
CCDC39Q9UFE4 AC008033.2-201ENST00000542626 177 ntBASIC5.4□□□□□ -1.54
CCDC39Q9UFE4 AL355076.2-202ENST00000553754 574 ntTSL 4 BASIC5.4□□□□□ -1.54
CCDC39Q9UFE4 AL359232.1-201ENST00000556361 442 ntTSL 3 BASIC5.4□□□□□ -1.54
CCDC39Q9UFE4 AP001029.3-201ENST00000588063 596 ntBASIC5.4□□□□□ -1.54
CCDC39Q9UFE4 LINC01515-204ENST00000595269 402 ntTSL 5 BASIC5.4□□□□□ -1.54
CCDC39Q9UFE4 HTN1-205ENST00000610341 536 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.54
CCDC39Q9UFE4 SDR42E1P1-201ENST00000611327 477 ntBASIC5.4□□□□□ -1.54
CCDC39Q9UFE4 AC107871.2-201ENST00000612894 502 ntBASIC5.4□□□□□ -1.54
CCDC39Q9UFE4 AC130324.3-201ENST00000614165 542 ntBASIC5.4□□□□□ -1.54
CCDC39Q9UFE4 DAZ1-205ENST00000540248 3268 ntTSL 5 BASIC5.4□□□□□ -1.55
CCDC39Q9UFE4 MTND5P28-201ENST00000438005 1594 ntBASIC5.4□□□□□ -1.55
CCDC39Q9UFE4 AL592182.3-201ENST00000642132 3304 ntBASIC5.4□□□□□ -1.55
CCDC39Q9UFE4 R3HDM1-203ENST00000409606 3673 ntAPPRIS ALT1 TSL 2 BASIC5.4□□□□□ -1.55
CCDC39Q9UFE4 UBE2W-207ENST00000602593 2201 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.55
CCDC39Q9UFE4 CCDC158-202ENST00000434846 1728 ntTSL 1 (best) BASIC5.4□□□□□ -1.55
CCDC39Q9UFE4 NUDCD1-202ENST00000427660 2098 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
CCDC39Q9UFE4 MUC15-205ENST00000529533 2084 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
CCDC39Q9UFE4 ZRANB3-201ENST00000264159 4046 ntAPPRIS P3 TSL 1 (best) BASIC5.39□□□□□ -1.55
CCDC39Q9UFE4 ZNF568-216ENST00000619231 3797 ntAPPRIS P1 TSL 3 BASIC5.39□□□□□ -1.55
CCDC39Q9UFE4 ZC3H7A-202ENST00000396516 3845 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
CCDC39Q9UFE4 CNTN5-209ENST00000528682 3800 ntAPPRIS P4 TSL 5 BASIC5.39□□□□□ -1.55
CCDC39Q9UFE4 ZPLD1-202ENST00000466937 1531 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
CCDC39Q9UFE4 DMD-229ENST00000619831 13734 ntAPPRIS ALT2 TSL 5 BASIC5.39□□□□□ -1.55
CCDC39Q9UFE4 LRIT3-202ENST00000594814 3566 ntAPPRIS P1 TSL 5 BASIC5.39□□□□□ -1.55
Retrieved 100 of 98,524 protein–RNA pairs in 141.3 ms