Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 AL512643.1-201ENST00000635735 524 ntBASIC5.63□□□□□ -1.51
TRAIPQ9BWF2 LCA5L-218ENST00000485895 2551 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
TRAIPQ9BWF2 PCDH15-215ENST00000409834 5401 ntTSL 5 BASIC5.63□□□□□ -1.51
TRAIPQ9BWF2 AC000123.3-201ENST00000624029 4975 ntBASIC5.63□□□□□ -1.51
TRAIPQ9BWF2 KRR1-201ENST00000229214 10118 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
TRAIPQ9BWF2 AGO3-203ENST00000373191 19687 ntAPPRIS P1 TSL 2 BASIC5.63□□□□□ -1.51
TRAIPQ9BWF2 PDS5B-201ENST00000315596 7497 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
TRAIPQ9BWF2 AL033384.1-202ENST00000431554 3104 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
TRAIPQ9BWF2 PEAK1-204ENST00000560626 19217 ntAPPRIS P1 TSL 5 BASIC5.62□□□□□ -1.51
TRAIPQ9BWF2 A1CF-205ENST00000374001 9221 ntAPPRIS ALT1 TSL 5 BASIC5.62□□□□□ -1.51
TRAIPQ9BWF2 SMNDC1-202ENST00000369603 4341 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
TRAIPQ9BWF2 SCN2A-201ENST00000283256 8660 ntAPPRIS P5 TSL 1 (best) BASIC5.62□□□□□ -1.51
TRAIPQ9BWF2 USP29-202ENST00000598197 3284 ntAPPRIS P1 BASIC5.62□□□□□ -1.51
TRAIPQ9BWF2 CUL2-206ENST00000421317 2376 ntTSL 2 BASIC5.62□□□□□ -1.51
TRAIPQ9BWF2 LCLAT1-203ENST00000379509 4888 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
TRAIPQ9BWF2 RNU6-512P-201ENST00000364438 103 ntBASIC5.62□□□□□ -1.51
TRAIPQ9BWF2 RNU6-741P-201ENST00000383889 107 ntBASIC5.62□□□□□ -1.51
TRAIPQ9BWF2 RNA5SP87-201ENST00000384155 118 ntBASIC5.62□□□□□ -1.51
TRAIPQ9BWF2 RNU6-1127P-201ENST00000384580 107 ntBASIC5.62□□□□□ -1.51
TRAIPQ9BWF2 TRAJ35-201ENST00000390502 59 ntAPPRIS P1 BASIC5.62□□□□□ -1.51
TRAIPQ9BWF2 POLHP1-201ENST00000411806 470 ntBASIC5.62□□□□□ -1.51
TRAIPQ9BWF2 AC005482.1-201ENST00000420758 575 ntTSL 4 BASIC5.62□□□□□ -1.51
TRAIPQ9BWF2 AC079799.1-201ENST00000430696 331 ntTSL 3 BASIC5.62□□□□□ -1.51
TRAIPQ9BWF2 AP000943.1-201ENST00000438416 712 ntTSL 3 BASIC5.62□□□□□ -1.51
TRAIPQ9BWF2 AC006466.1-201ENST00000438721 289 ntBASIC5.62□□□□□ -1.51
TRAIPQ9BWF2 AL138767.2-201ENST00000446794 168 ntTSL 3 BASIC5.62□□□□□ -1.51
TRAIPQ9BWF2 AC008264.1-201ENST00000447612 367 ntBASIC5.62□□□□□ -1.51
TRAIPQ9BWF2 RPS15AP27-201ENST00000449183 343 ntBASIC5.62□□□□□ -1.51
TRAIPQ9BWF2 AL353780.1-201ENST00000455583 458 ntTSL 2 BASIC5.62□□□□□ -1.51
TRAIPQ9BWF2 AC092324.1-201ENST00000468671 324 ntBASIC5.62□□□□□ -1.51
TRAIPQ9BWF2 ENPP7P11-201ENST00000505915 627 ntBASIC5.62□□□□□ -1.51
TRAIPQ9BWF2 AC079140.5-201ENST00000507882 310 ntBASIC5.62□□□□□ -1.51
TRAIPQ9BWF2 COX6B1P5-201ENST00000509843 249 ntBASIC5.62□□□□□ -1.51
TRAIPQ9BWF2 HIGD1AP13-201ENST00000509878 289 ntBASIC5.62□□□□□ -1.51
TRAIPQ9BWF2 AC016556.1-201ENST00000510004 935 ntTSL 2 BASIC5.62□□□□□ -1.51
TRAIPQ9BWF2 RNU6-189P-201ENST00000516120 101 ntBASIC5.62□□□□□ -1.51
TRAIPQ9BWF2 Y_RNA.665-201ENST00000516177 98 ntBASIC5.62□□□□□ -1.51
TRAIPQ9BWF2 AC107953.1-201ENST00000522216 297 ntBASIC5.62□□□□□ -1.51
TRAIPQ9BWF2 AC100768.1-201ENST00000525512 506 ntTSL 3 BASIC5.62□□□□□ -1.51
TRAIPQ9BWF2 AC092747.1-201ENST00000538920 351 ntTSL 5 BASIC5.62□□□□□ -1.51
TRAIPQ9BWF2 EDDM3DP-201ENST00000554692 434 ntBASIC5.62□□□□□ -1.51
TRAIPQ9BWF2 MEG8-215ENST00000555354 469 ntTSL 3 BASIC5.62□□□□□ -1.51
TRAIPQ9BWF2 AC079203.2-201ENST00000559867 387 ntTSL 2 BASIC5.62□□□□□ -1.51
TRAIPQ9BWF2 AC040958.1-201ENST00000561102 201 ntBASIC5.62□□□□□ -1.51
TRAIPQ9BWF2 MIR3934-201ENST00000579806 107 ntBASIC5.62□□□□□ -1.51
TRAIPQ9BWF2 MIR3690-201ENST00000580266 75 ntBASIC5.62□□□□□ -1.51
TRAIPQ9BWF2 MIR5583-1-201ENST00000580941 59 ntBASIC5.62□□□□□ -1.51
TRAIPQ9BWF2 MIR3941-201ENST00000582572 103 ntBASIC5.62□□□□□ -1.51
TRAIPQ9BWF2 AC098826.3-201ENST00000603823 466 ntBASIC5.62□□□□□ -1.51
TRAIPQ9BWF2 AL592436.1-201ENST00000605135 558 ntBASIC5.62□□□□□ -1.51
TRAIPQ9BWF2 AC079610.3-201ENST00000606960 147 ntTSL 3 BASIC5.62□□□□□ -1.51
TRAIPQ9BWF2 AL713922.2-201ENST00000619384 716 ntBASIC5.62□□□□□ -1.51
TRAIPQ9BWF2 POF1B-201ENST00000262753 3941 ntAPPRIS P3 TSL 1 (best) BASIC5.62□□□□□ -1.51
TRAIPQ9BWF2 RPGRIP1L-201ENST00000262135 8195 ntAPPRIS P3 TSL 5 BASIC5.62□□□□□ -1.51
TRAIPQ9BWF2 PRUNE2-204ENST00000376718 12584 ntAPPRIS P3 TSL 5 BASIC5.62□□□□□ -1.51
TRAIPQ9BWF2 LANCL1-204ENST00000441020 4503 ntAPPRIS P1 TSL 5 BASIC5.62□□□□□ -1.51
TRAIPQ9BWF2 SRSF11-201ENST00000370949 3034 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
TRAIPQ9BWF2 CSMD3-204ENST00000455883 12485 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
TRAIPQ9BWF2 SCN11A-202ENST00000444237 5729 ntAPPRIS ALT2 TSL 5 BASIC5.62□□□□□ -1.51
TRAIPQ9BWF2 MFAP1-201ENST00000267812 2155 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
TRAIPQ9BWF2 TANK-205ENST00000405852 2155 ntTSL 5 BASIC5.62□□□□□ -1.51
TRAIPQ9BWF2 ARHGAP18-201ENST00000368149 4462 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
TRAIPQ9BWF2 AC112198.2-201ENST00000426589 6996 ntBASIC5.62□□□□□ -1.51
TRAIPQ9BWF2 OR2AT4-205ENST00000641931 8357 ntAPPRIS P1 BASIC5.61□□□□□ -1.51
TRAIPQ9BWF2 LRRC37A-203ENST00000496930 3860 ntTSL 2 BASIC5.61□□□□□ -1.51
TRAIPQ9BWF2 Y_RNA.245-201ENST00000364493 95 ntBASIC5.61□□□□□ -1.51
TRAIPQ9BWF2 Y_RNA.378-201ENST00000365652 113 ntBASIC5.61□□□□□ -1.51
TRAIPQ9BWF2 DEFB109C-201ENST00000382575 264 ntBASIC5.61□□□□□ -1.51
TRAIPQ9BWF2 DEFB109B-201ENST00000382656 264 ntBASIC5.61□□□□□ -1.51
TRAIPQ9BWF2 MIR589-201ENST00000385238 99 ntBASIC5.61□□□□□ -1.51
TRAIPQ9BWF2 TRBV24-1-201ENST00000390397 381 ntAPPRIS P1 BASIC5.61□□□□□ -1.51
TRAIPQ9BWF2 MTND3P8-201ENST00000412909 339 ntBASIC5.61□□□□□ -1.51
TRAIPQ9BWF2 COX5BP7-201ENST00000414780 274 ntBASIC5.61□□□□□ -1.51
TRAIPQ9BWF2 AL139095.3-201ENST00000419672 1203 ntBASIC5.61□□□□□ -1.51
TRAIPQ9BWF2 LINC01204-201ENST00000422047 639 ntTSL 3 BASIC5.61□□□□□ -1.51
TRAIPQ9BWF2 FABP7P2-201ENST00000429946 379 ntBASIC5.61□□□□□ -1.51
TRAIPQ9BWF2 AC009237.8-201ENST00000445492 379 ntBASIC5.61□□□□□ -1.51
TRAIPQ9BWF2 MCHR2-AS1-203ENST00000451220 429 ntTSL 3 BASIC5.61□□□□□ -1.51
TRAIPQ9BWF2 RNU7-30P-201ENST00000516835 62 ntBASIC5.61□□□□□ -1.51
TRAIPQ9BWF2 RNA5SP290-201ENST00000517133 127 ntBASIC5.61□□□□□ -1.51
TRAIPQ9BWF2 LYRM2-203ENST00000520318 677 ntTSL 2 BASIC5.61□□□□□ -1.51
TRAIPQ9BWF2 AC027369.5-201ENST00000533838 755 ntBASIC5.61□□□□□ -1.51
TRAIPQ9BWF2 AL049839.1-201ENST00000556151 657 ntBASIC5.61□□□□□ -1.51
TRAIPQ9BWF2 LINC01859-201ENST00000565584 1024 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
TRAIPQ9BWF2 MIR4480-201ENST00000582492 71 ntBASIC5.61□□□□□ -1.51
TRAIPQ9BWF2 AP005432.2-201ENST00000608162 586 ntBASIC5.61□□□□□ -1.51
TRAIPQ9BWF2 AL359314.1-201ENST00000616913 261 ntBASIC5.61□□□□□ -1.51
TRAIPQ9BWF2 PSMD1-213ENST00000619128 3161 ntAPPRIS ALT1 TSL 5 BASIC5.61□□□□□ -1.51
TRAIPQ9BWF2 OR51H2P-202ENST00000641424 3046 ntBASIC5.61□□□□□ -1.51
TRAIPQ9BWF2 OR14L1P-202ENST00000641545 3009 ntBASIC5.61□□□□□ -1.51
TRAIPQ9BWF2 GRID2-208ENST00000611049 4844 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
TRAIPQ9BWF2 AK9-204ENST00000424296 6326 ntAPPRIS P1 TSL 5 BASIC5.61□□□□□ -1.51
TRAIPQ9BWF2 FAM197Y3-202ENST00000427622 2325 ntTSL 5 BASIC5.6□□□□□ -1.51
TRAIPQ9BWF2 FAM197Y7-202ENST00000433321 2325 ntTSL 2 BASIC5.6□□□□□ -1.51
TRAIPQ9BWF2 CBLL1-201ENST00000222597 2003 ntAPPRIS ALT1 TSL 1 (best) BASIC5.6□□□□□ -1.51
TRAIPQ9BWF2 ADAM5-202ENST00000399789 1942 ntBASIC5.6□□□□□ -1.51
TRAIPQ9BWF2 TXNDC8-201ENST00000374507 1787 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
TRAIPQ9BWF2 ATP8A2P2-201ENST00000437678 1568 ntBASIC5.6□□□□□ -1.51
TRAIPQ9BWF2 FAM184A-212ENST00000522284 2721 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
TRAIPQ9BWF2 ATRX-202ENST00000395603 10218 ntAPPRIS ALT2 TSL 1 (best) BASIC5.6□□□□□ -1.51
Retrieved 100 of 98,524 protein–RNA pairs in 94.3 ms