Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 PIGY-201ENST00000527353 217 ntAPPRIS P1 BASIC3.08□□□□□ -1.92
VPS35Q96QK1 AP002992.1-202ENST00000530842 551 ntTSL 2 BASIC3.08□□□□□ -1.92
VPS35Q96QK1 OR4K8P-201ENST00000578842 1048 ntBASIC3.08□□□□□ -1.92
VPS35Q96QK1 AC233702.6-201ENST00000584594 396 ntTSL 3 BASIC3.08□□□□□ -1.92
VPS35Q96QK1 DUXAP11-201ENST00000603858 526 ntBASIC3.08□□□□□ -1.92
VPS35Q96QK1 PRELID3BP8-201ENST00000604148 295 ntBASIC3.08□□□□□ -1.92
VPS35Q96QK1 AL627309.6-201ENST00000606857 840 ntBASIC3.08□□□□□ -1.92
VPS35Q96QK1 AL109620.1-201ENST00000618738 1197 ntBASIC3.08□□□□□ -1.92
VPS35Q96QK1 AC009269.6-201ENST00000621778 588 ntBASIC3.08□□□□□ -1.92
VPS35Q96QK1 CRYM-AS1-204ENST00000637983 556 ntBASIC3.08□□□□□ -1.92
VPS35Q96QK1 SLC10A5P1-201ENST00000379063 1306 ntBASIC3.08□□□□□ -1.92
VPS35Q96QK1 AL513185.3-201ENST00000433335 1300 ntBASIC3.08□□□□□ -1.92
VPS35Q96QK1 ASPN-201ENST00000375543 2237 ntTSL 2 BASIC3.08□□□□□ -1.92
VPS35Q96QK1 DDX60L-207ENST00000505890 4568 ntTSL 2 BASIC3.08□□□□□ -1.92
VPS35Q96QK1 NEBL-202ENST00000377122 9216 ntTSL 1 (best) BASIC3.07□□□□□ -1.92
VPS35Q96QK1 CCDC178-213ENST00000583930 3094 ntAPPRIS ALT2 TSL 1 (best) BASIC3.07□□□□□ -1.92
VPS35Q96QK1 ZNF280D-201ENST00000267807 4328 ntAPPRIS P3 TSL 1 (best) BASIC3.07□□□□□ -1.92
VPS35Q96QK1 AC103988.1-201ENST00000566382 2177 ntBASIC3.07□□□□□ -1.92
VPS35Q96QK1 RNA5SP374-201ENST00000362939 125 ntBASIC3.07□□□□□ -1.92
VPS35Q96QK1 Y_RNA.333-201ENST00000365274 102 ntBASIC3.07□□□□□ -1.92
VPS35Q96QK1 CUBN-201ENST00000377823 705 ntTSL 3 BASIC3.07□□□□□ -1.92
VPS35Q96QK1 RNU6-413P-201ENST00000384115 107 ntBASIC3.07□□□□□ -1.92
VPS35Q96QK1 MIR887-201ENST00000401258 79 ntBASIC3.07□□□□□ -1.92
VPS35Q96QK1 BEND7P1-201ENST00000422058 457 ntBASIC3.07□□□□□ -1.92
VPS35Q96QK1 AL080248.1-201ENST00000428954 388 ntTSL 3 BASIC3.07□□□□□ -1.92
VPS35Q96QK1 AC004160.1-205ENST00000428967 577 ntTSL 4 BASIC3.07□□□□□ -1.92
VPS35Q96QK1 AC092598.1-201ENST00000431708 797 ntTSL 3 BASIC3.07□□□□□ -1.92
VPS35Q96QK1 ZMYM4-AS1-201ENST00000432683 459 ntTSL 2 BASIC3.07□□□□□ -1.92
VPS35Q96QK1 SNRPEP4-201ENST00000435815 279 ntBASIC3.07□□□□□ -1.92
VPS35Q96QK1 MTND4P6-201ENST00000438297 472 ntBASIC3.07□□□□□ -1.92
VPS35Q96QK1 AL365204.2-201ENST00000446754 687 ntTSL 2 BASIC3.07□□□□□ -1.92
VPS35Q96QK1 AC016696.1-201ENST00000446949 318 ntBASIC3.07□□□□□ -1.92
VPS35Q96QK1 OR6K5P-201ENST00000447050 945 ntBASIC3.07□□□□□ -1.92
VPS35Q96QK1 AL157400.4-201ENST00000455699 667 ntTSL 1 (best) BASIC3.07□□□□□ -1.92
VPS35Q96QK1 LINC01510-203ENST00000458082 626 ntTSL 3 BASIC3.07□□□□□ -1.92
VPS35Q96QK1 AC093523.1-201ENST00000503268 499 ntTSL 3 BASIC3.07□□□□□ -1.92
VPS35Q96QK1 LINC02379-201ENST00000505741 300 ntTSL 3 BASIC3.07□□□□□ -1.92
VPS35Q96QK1 AC026719.1-201ENST00000506059 456 ntTSL 3 BASIC3.07□□□□□ -1.92
VPS35Q96QK1 AC114322.1-201ENST00000506771 926 ntBASIC3.07□□□□□ -1.92
VPS35Q96QK1 XKRY-201ENST00000510392 1100 ntBASIC3.07□□□□□ -1.92
VPS35Q96QK1 RNY4P37-201ENST00000516225 96 ntBASIC3.07□□□□□ -1.92
VPS35Q96QK1 ZKSCAN7P1-201ENST00000543668 673 ntBASIC3.07□□□□□ -1.92
VPS35Q96QK1 LINC02562-201ENST00000561705 785 ntTSL 2 BASIC3.07□□□□□ -1.92
VPS35Q96QK1 VN1R78P-201ENST00000597393 564 ntBASIC3.07□□□□□ -1.92
VPS35Q96QK1 AC009570.1-201ENST00000609599 745 ntBASIC3.07□□□□□ -1.92
VPS35Q96QK1 TUG1_1.1-201ENST00000610654 145 ntBASIC3.07□□□□□ -1.92
VPS35Q96QK1 AL356130.2-201ENST00000612554 404 ntTSL 3 BASIC3.07□□□□□ -1.92
VPS35Q96QK1 RNF128-202ENST00000324342 2654 ntTSL 1 (best) BASIC3.07□□□□□ -1.92
VPS35Q96QK1 AL356473.1-201ENST00000406203 1408 ntBASIC3.07□□□□□ -1.92
VPS35Q96QK1 ANGPTL1-201ENST00000234816 3348 ntAPPRIS P1 TSL 1 (best) BASIC3.07□□□□□ -1.92
VPS35Q96QK1 ZNF639-206ENST00000484866 1730 ntAPPRIS P1 TSL 2 BASIC3.07□□□□□ -1.92
VPS35Q96QK1 MTND5P24-201ENST00000438892 1767 ntBASIC3.07□□□□□ -1.92
VPS35Q96QK1 AC108750.1-201ENST00000637986 2706 ntAPPRIS P1 TSL 4 BASIC3.06□□□□□ -1.92
VPS35Q96QK1 AL355596.1-201ENST00000565399 3996 ntBASIC3.06□□□□□ -1.92
VPS35Q96QK1 METTL18-201ENST00000303469 1426 ntAPPRIS P1 TSL 1 (best) BASIC3.06□□□□□ -1.92
VPS35Q96QK1 SNORA51.4-201ENST00000364993 124 ntBASIC3.06□□□□□ -1.92
VPS35Q96QK1 FPGT-TNNI3K-202ENST00000370895 7566 ntTSL 2 BASIC3.06□□□□□ -1.92
VPS35Q96QK1 AKAP14-202ENST00000371422 412 ntAPPRIS ALT2 TSL 1 (best) BASIC3.06□□□□□ -1.92
VPS35Q96QK1 SNORA9-201ENST00000384215 133 ntBASIC3.06□□□□□ -1.92
VPS35Q96QK1 RPL21P3-201ENST00000395517 478 ntBASIC3.06□□□□□ -1.92
VPS35Q96QK1 AC110754.1-201ENST00000399740 601 ntBASIC3.06□□□□□ -1.92
VPS35Q96QK1 RNU2-43P-201ENST00000410306 190 ntBASIC3.06□□□□□ -1.92
VPS35Q96QK1 RNU6-1077P-201ENST00000410506 102 ntBASIC3.06□□□□□ -1.92
VPS35Q96QK1 AC005162.2-201ENST00000411479 578 ntTSL 4 BASIC3.06□□□□□ -1.92
VPS35Q96QK1 UBE2Q2P12-201ENST00000414573 204 ntBASIC3.06□□□□□ -1.92
VPS35Q96QK1 DIAPH3-AS1-201ENST00000422052 428 ntTSL 3 BASIC3.06□□□□□ -1.92
VPS35Q96QK1 LINC00387-201ENST00000422609 458 ntTSL 5 BASIC3.06□□□□□ -1.92
VPS35Q96QK1 AL357375.1-201ENST00000424274 525 ntTSL 3 BASIC3.06□□□□□ -1.92
VPS35Q96QK1 BBS9-205ENST00000425508 1252 ntTSL 1 (best) BASIC3.06□□□□□ -1.92
VPS35Q96QK1 GNGT1-202ENST00000428834 731 ntTSL 3 BASIC3.06□□□□□ -1.92
VPS35Q96QK1 MTCYBP45-201ENST00000435243 565 ntBASIC3.06□□□□□ -1.92
VPS35Q96QK1 AC022537.1-201ENST00000435271 446 ntTSL 3 BASIC3.06□□□□□ -1.92
VPS35Q96QK1 ISPD-AS1-202ENST00000438573 2252 ntTSL 1 (best) BASIC3.06□□□□□ -1.92
VPS35Q96QK1 AL121871.1-201ENST00000443413 436 ntBASIC3.06□□□□□ -1.92
VPS35Q96QK1 AL050303.1-201ENST00000444356 458 ntTSL 2 BASIC3.06□□□□□ -1.92
VPS35Q96QK1 MTCO2P25-201ENST00000447065 681 ntBASIC3.06□□□□□ -1.92
VPS35Q96QK1 OFD1P7Y-201ENST00000454643 1155 ntBASIC3.06□□□□□ -1.92
VPS35Q96QK1 snoU109.3-201ENST00000459477 145 ntBASIC3.06□□□□□ -1.92
VPS35Q96QK1 AC146507.2-201ENST00000460608 476 ntBASIC3.06□□□□□ -1.92
VPS35Q96QK1 SATB1-216ENST00000491519 1000 ntTSL 2 BASIC3.06□□□□□ -1.92
VPS35Q96QK1 AC097467.3-212ENST00000512269 568 ntTSL 3 BASIC3.06□□□□□ -1.92
VPS35Q96QK1 SNORA70.16-201ENST00000516390 95 ntBASIC3.06□□□□□ -1.92
VPS35Q96QK1 SNORA70.24-201ENST00000517233 118 ntBASIC3.06□□□□□ -1.92
VPS35Q96QK1 RNU6-711P-201ENST00000517255 106 ntBASIC3.06□□□□□ -1.92
VPS35Q96QK1 AC109466.1-211ENST00000519327 496 ntTSL 3 BASIC3.06□□□□□ -1.92
VPS35Q96QK1 TMEM68-214ENST00000523073 536 ntTSL 3 BASIC3.06□□□□□ -1.92
VPS35Q96QK1 FAM60DP-201ENST00000524174 632 ntBASIC3.06□□□□□ -1.92
VPS35Q96QK1 PSMA2P1-201ENST00000526365 646 ntBASIC3.06□□□□□ -1.92
VPS35Q96QK1 AP003969.1-201ENST00000531846 400 ntTSL 2 BASIC3.06□□□□□ -1.92
VPS35Q96QK1 REXO2-218ENST00000544827 880 ntTSL 3 BASIC3.06□□□□□ -1.92
VPS35Q96QK1 AC023510.1-201ENST00000555862 490 ntTSL 2 BASIC3.06□□□□□ -1.92
VPS35Q96QK1 AC006539.2-201ENST00000601729 572 ntBASIC3.06□□□□□ -1.92
VPS35Q96QK1 MIR663AHG-231ENST00000609044 590 ntTSL 5 BASIC3.06□□□□□ -1.92
VPS35Q96QK1 AL596245.1-201ENST00000618994 362 ntBASIC3.06□□□□□ -1.92
VPS35Q96QK1 THOC1-220ENST00000621904 1083 ntTSL 5 BASIC3.06□□□□□ -1.92
VPS35Q96QK1 FP475955.2-201ENST00000623720 458 ntTSL 2 BASIC3.06□□□□□ -1.92
VPS35Q96QK1 MBNL3-205ENST00000370857 8760 ntTSL 5 BASIC3.06□□□□□ -1.92
VPS35Q96QK1 NEB-220ENST00000618972 26307 ntAPPRIS ALT2 TSL 5 BASIC3.06□□□□□ -1.92
VPS35Q96QK1 AL035425.3-201ENST00000564206 4996 ntBASIC3.06□□□□□ -1.92
VPS35Q96QK1 YWHAZ-211ENST00000457309 3007 ntAPPRIS P1 TSL 2 BASIC3.06□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 96.9 ms