Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 TGIF1P1-201ENST00000558095 802 ntBASIC3.28□□□□□ -1.88
HDDC3Q8N4P3 AC012100.2-201ENST00000558317 304 ntTSL 5 BASIC3.28□□□□□ -1.88
HDDC3Q8N4P3 NR2F2-AS1-211ENST00000561402 589 ntTSL 3 BASIC3.28□□□□□ -1.88
HDDC3Q8N4P3 LINC2194-201ENST00000567127 454 ntTSL 3 BASIC3.28□□□□□ -1.88
HDDC3Q8N4P3 AC099793.1-201ENST00000567538 285 ntTSL 3 BASIC3.28□□□□□ -1.88
HDDC3Q8N4P3 AC007598.2-201ENST00000569490 539 ntTSL 3 BASIC3.28□□□□□ -1.88
HDDC3Q8N4P3 MTND3P13-201ENST00000574391 343 ntBASIC3.28□□□□□ -1.88
HDDC3Q8N4P3 AC127024.3-201ENST00000582841 460 ntTSL 3 BASIC3.28□□□□□ -1.88
HDDC3Q8N4P3 TTN-AS1-212ENST00000582847 1036 ntTSL 5 BASIC3.28□□□□□ -1.88
HDDC3Q8N4P3 AC006539.2-201ENST00000601729 572 ntBASIC3.28□□□□□ -1.88
HDDC3Q8N4P3 AC006023.1-201ENST00000603944 259 ntBASIC3.28□□□□□ -1.88
HDDC3Q8N4P3 AC021749.1-201ENST00000604322 607 ntBASIC3.28□□□□□ -1.88
HDDC3Q8N4P3 HNRNPDLP4-201ENST00000605144 301 ntBASIC3.28□□□□□ -1.88
HDDC3Q8N4P3 AC104763.3-201ENST00000613765 618 ntBASIC3.28□□□□□ -1.88
HDDC3Q8N4P3 AL596245.1-201ENST00000618994 362 ntBASIC3.28□□□□□ -1.88
HDDC3Q8N4P3 THOC1-220ENST00000621904 1083 ntTSL 5 BASIC3.28□□□□□ -1.88
HDDC3Q8N4P3 AP002371.2-201ENST00000624450 503 ntBASIC3.28□□□□□ -1.88
HDDC3Q8N4P3 AL138960.2-201ENST00000625145 535 ntBASIC3.28□□□□□ -1.88
HDDC3Q8N4P3 AP003481.1-201ENST00000637808 351 ntTSL 5 BASIC3.28□□□□□ -1.88
HDDC3Q8N4P3 SYNE1-212ENST00000423061 27436 ntAPPRIS ALT2 TSL 1 (best) BASIC3.28□□□□□ -1.88
HDDC3Q8N4P3 ANKRD36C-201ENST00000295246 2272 ntTSL 5 BASIC3.28□□□□□ -1.88
HDDC3Q8N4P3 LRRC39-201ENST00000342895 1881 ntAPPRIS P1 TSL 5 BASIC3.28□□□□□ -1.88
HDDC3Q8N4P3 PHF6-201ENST00000332070 4759 ntAPPRIS P2 TSL 1 (best) BASIC3.28□□□□□ -1.88
HDDC3Q8N4P3 PCAT4-201ENST00000504263 2091 ntTSL 1 (best) BASIC3.28□□□□□ -1.89
HDDC3Q8N4P3 FBXO11-201ENST00000402508 3844 ntAPPRIS P1 TSL 1 (best) BASIC3.27□□□□□ -1.89
HDDC3Q8N4P3 TAS2R14-202ENST00000537503 1858 ntAPPRIS P1 BASIC3.27□□□□□ -1.89
HDDC3Q8N4P3 RNU1-70P-201ENST00000362618 164 ntBASIC3.27□□□□□ -1.89
HDDC3Q8N4P3 RNU6-1027P-201ENST00000383998 107 ntBASIC3.27□□□□□ -1.89
HDDC3Q8N4P3 RNU6-301P-201ENST00000384277 107 ntBASIC3.27□□□□□ -1.89
HDDC3Q8N4P3 AL590084.1-201ENST00000407885 387 ntBASIC3.27□□□□□ -1.89
HDDC3Q8N4P3 AC007463.1-201ENST00000416534 734 ntTSL 3 BASIC3.27□□□□□ -1.89
HDDC3Q8N4P3 LINC01794-201ENST00000420187 549 ntTSL 4 BASIC3.27□□□□□ -1.89
HDDC3Q8N4P3 DIAPH3-AS1-201ENST00000422052 428 ntTSL 3 BASIC3.27□□□□□ -1.89
HDDC3Q8N4P3 LINC00387-201ENST00000422609 458 ntTSL 5 BASIC3.27□□□□□ -1.89
HDDC3Q8N4P3 RPL35AP12-201ENST00000425362 338 ntBASIC3.27□□□□□ -1.89
HDDC3Q8N4P3 ZFY-AS1-202ENST00000431145 419 ntTSL 3 BASIC3.27□□□□□ -1.89
HDDC3Q8N4P3 AC009158.1-207ENST00000432973 394 ntTSL 5 BASIC3.27□□□□□ -1.89
HDDC3Q8N4P3 LINC01797-202ENST00000433432 765 ntTSL 3 BASIC3.27□□□□□ -1.89
HDDC3Q8N4P3 AC092573.2-201ENST00000434546 243 ntBASIC3.27□□□□□ -1.89
HDDC3Q8N4P3 OR5H14-201ENST00000437310 1080 ntAPPRIS P1 BASIC3.27□□□□□ -1.89
HDDC3Q8N4P3 AC024908.1-202ENST00000441907 764 ntTSL 2 BASIC3.27□□□□□ -1.89
HDDC3Q8N4P3 AL050303.1-201ENST00000444356 458 ntTSL 2 BASIC3.27□□□□□ -1.89
HDDC3Q8N4P3 RNF148-202ENST00000447240 839 ntTSL 2 BASIC3.27□□□□□ -1.89
HDDC3Q8N4P3 HMGB3P8-201ENST00000449709 577 ntBASIC3.27□□□□□ -1.89
HDDC3Q8N4P3 OFD1P7Y-201ENST00000454643 1155 ntBASIC3.27□□□□□ -1.89
HDDC3Q8N4P3 BCL2L15-204ENST00000471267 267 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
HDDC3Q8N4P3 AC068724.1-201ENST00000487100 792 ntBASIC3.27□□□□□ -1.89
HDDC3Q8N4P3 FAM172BP-201ENST00000487497 1089 ntBASIC3.27□□□□□ -1.89
HDDC3Q8N4P3 KCTD9P5-201ENST00000504141 1170 ntBASIC3.27□□□□□ -1.89
HDDC3Q8N4P3 LINC01846-201ENST00000505908 651 ntTSL 5 BASIC3.27□□□□□ -1.89
HDDC3Q8N4P3 AC006445.2-201ENST00000510061 472 ntBASIC3.27□□□□□ -1.89
HDDC3Q8N4P3 XKRY-201ENST00000510392 1100 ntBASIC3.27□□□□□ -1.89
HDDC3Q8N4P3 AC139720.2-201ENST00000514766 440 ntTSL 2 BASIC3.27□□□□□ -1.89
HDDC3Q8N4P3 AC112206.4-201ENST00000515142 405 ntBASIC3.27□□□□□ -1.89
HDDC3Q8N4P3 AC007619.1-201ENST00000544086 412 ntTSL 5 BASIC3.27□□□□□ -1.89
HDDC3Q8N4P3 LINC01467-201ENST00000554211 1187 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
HDDC3Q8N4P3 DNAJC8P1-201ENST00000554535 372 ntBASIC3.27□□□□□ -1.89
HDDC3Q8N4P3 AL355097.1-201ENST00000555889 539 ntTSL 4 BASIC3.27□□□□□ -1.89
HDDC3Q8N4P3 LINC01146-208ENST00000557355 548 ntTSL 4 BASIC3.27□□□□□ -1.89
HDDC3Q8N4P3 AC021739.4-201ENST00000561417 569 ntTSL 4 BASIC3.27□□□□□ -1.89
HDDC3Q8N4P3 AL132657.2-201ENST00000564417 358 ntBASIC3.27□□□□□ -1.89
HDDC3Q8N4P3 AC034105.3-201ENST00000565294 442 ntBASIC3.27□□□□□ -1.89
HDDC3Q8N4P3 AC105224.1-201ENST00000587055 421 ntBASIC3.27□□□□□ -1.89
HDDC3Q8N4P3 AL157938.2-203ENST00000589540 931 ntTSL 5 BASIC3.27□□□□□ -1.89
HDDC3Q8N4P3 ACYP2-208ENST00000606865 674 ntTSL 5 BASIC3.27□□□□□ -1.89
HDDC3Q8N4P3 AL158163.2-201ENST00000619110 700 ntBASIC3.27□□□□□ -1.89
HDDC3Q8N4P3 SNORD39.4-201ENST00000620099 78 ntBASIC3.27□□□□□ -1.89
HDDC3Q8N4P3 AC110801.1-201ENST00000623590 212 ntBASIC3.27□□□□□ -1.89
HDDC3Q8N4P3 AC090772.4-201ENST00000623599 362 ntBASIC3.27□□□□□ -1.89
HDDC3Q8N4P3 FP475955.2-201ENST00000623720 458 ntTSL 2 BASIC3.27□□□□□ -1.89
HDDC3Q8N4P3 MTCO1P9-201ENST00000505577 1534 ntBASIC3.27□□□□□ -1.89
HDDC3Q8N4P3 FILIP1L-206ENST00000471562 2854 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
HDDC3Q8N4P3 MYOT-201ENST00000239926 2337 ntAPPRIS P1 TSL 1 (best) BASIC3.27□□□□□ -1.89
HDDC3Q8N4P3 FAM214A-201ENST00000261844 4217 ntAPPRIS P1 TSL 1 (best) BASIC3.27□□□□□ -1.89
HDDC3Q8N4P3 MAPK10-322ENST00000641485 4530 ntBASIC3.27□□□□□ -1.89
HDDC3Q8N4P3 MME-216ENST00000615825 5523 ntAPPRIS P1 TSL 1 (best) BASIC3.27□□□□□ -1.89
HDDC3Q8N4P3 CCDC30-212ENST00000507855 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC3.27□□□□□ -1.89
HDDC3Q8N4P3 ZNF542P-204ENST00000482727 1305 ntBASIC3.26□□□□□ -1.89
HDDC3Q8N4P3 AC233263.6-201ENST00000631132 1963 ntBASIC3.26□□□□□ -1.89
HDDC3Q8N4P3 OR52E2-201ENST00000321522 978 ntAPPRIS P1 BASIC3.26□□□□□ -1.89
HDDC3Q8N4P3 RNU5A-1-201ENST00000362698 116 ntBASIC3.26□□□□□ -1.89
HDDC3Q8N4P3 RNU6-1197P-201ENST00000391183 107 ntBASIC3.26□□□□□ -1.89
HDDC3Q8N4P3 HMGB1P17-201ENST00000403495 628 ntBASIC3.26□□□□□ -1.89
HDDC3Q8N4P3 MTCYBP45-201ENST00000435243 565 ntBASIC3.26□□□□□ -1.89
HDDC3Q8N4P3 AL035701.1-201ENST00000444038 462 ntTSL 3 BASIC3.26□□□□□ -1.89
HDDC3Q8N4P3 PCCA-AS1-203ENST00000455958 356 ntTSL 3 BASIC3.26□□□□□ -1.89
HDDC3Q8N4P3 AC010468.1-201ENST00000461022 817 ntBASIC3.26□□□□□ -1.89
HDDC3Q8N4P3 RN7SL863P-201ENST00000462370 296 ntBASIC3.26□□□□□ -1.89
HDDC3Q8N4P3 AC008481.1-201ENST00000463278 396 ntBASIC3.26□□□□□ -1.89
HDDC3Q8N4P3 KC877373.1-201ENST00000479066 408 ntBASIC3.26□□□□□ -1.89
HDDC3Q8N4P3 AC109464.2-201ENST00000510242 943 ntBASIC3.26□□□□□ -1.89
HDDC3Q8N4P3 AC026780.1-201ENST00000512237 952 ntTSL 3 BASIC3.26□□□□□ -1.89
HDDC3Q8N4P3 AC118465.1-201ENST00000513820 1271 ntBASIC3.26□□□□□ -1.89
HDDC3Q8N4P3 AC104237.1-201ENST00000527443 539 ntTSL 4 BASIC3.26□□□□□ -1.89
HDDC3Q8N4P3 PIH1D2-206ENST00000528775 1025 ntTSL 5 BASIC3.26□□□□□ -1.89
HDDC3Q8N4P3 AP000867.2-201ENST00000532468 320 ntBASIC3.26□□□□□ -1.89
HDDC3Q8N4P3 AC005832.3-201ENST00000537929 631 ntBASIC3.26□□□□□ -1.89
HDDC3Q8N4P3 AC009101.2-201ENST00000564293 456 ntTSL 3 BASIC3.26□□□□□ -1.89
HDDC3Q8N4P3 AC008739.1-201ENST00000598137 575 ntTSL 2 BASIC3.26□□□□□ -1.89
HDDC3Q8N4P3 RPL12P50-201ENST00000603116 116 ntBASIC3.26□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 79.9 ms