Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 DDX60L-201ENST00000260184 6754 ntAPPRIS P1 TSL 5 BASIC3.73□□□□□ -1.81
COL28A1Q2UY09 TRAPPC13-204ENST00000438419 1437 ntAPPRIS P4 TSL 1 (best) BASIC3.73□□□□□ -1.81
COL28A1Q2UY09 WHAMMP2-201ENST00000512149 5482 ntTSL 5 BASIC3.73□□□□□ -1.81
COL28A1Q2UY09 DMXL1-201ENST00000311085 11072 ntAPPRIS P1 TSL 1 (best) BASIC3.73□□□□□ -1.81
COL28A1Q2UY09 SPINK1-201ENST00000296695 542 ntAPPRIS P1 TSL 1 (best) BASIC3.73□□□□□ -1.81
COL28A1Q2UY09 U3.4-201ENST00000363352 213 ntBASIC3.73□□□□□ -1.81
COL28A1Q2UY09 SNORD35B-201ENST00000363660 87 ntBASIC3.73□□□□□ -1.81
COL28A1Q2UY09 Y_RNA.201-201ENST00000364052 96 ntBASIC3.73□□□□□ -1.81
COL28A1Q2UY09 RNA5SP97-201ENST00000365006 84 ntBASIC3.73□□□□□ -1.81
COL28A1Q2UY09 FAM24A-201ENST00000368894 596 ntAPPRIS P1 TSL 3 BASIC3.73□□□□□ -1.81
COL28A1Q2UY09 OR5V1-215ENST00000377154 1266 ntAPPRIS P1 BASIC3.73□□□□□ -1.81
COL28A1Q2UY09 RNU6-629P-201ENST00000384061 103 ntBASIC3.73□□□□□ -1.81
COL28A1Q2UY09 RNU2-47P-201ENST00000410649 186 ntBASIC3.73□□□□□ -1.81
COL28A1Q2UY09 RPS7P13-201ENST00000413955 498 ntBASIC3.73□□□□□ -1.81
COL28A1Q2UY09 BEND7P1-201ENST00000422058 457 ntBASIC3.73□□□□□ -1.81
COL28A1Q2UY09 AL139247.1-201ENST00000422768 325 ntBASIC3.73□□□□□ -1.81
COL28A1Q2UY09 AC097713.2-201ENST00000430199 356 ntBASIC3.73□□□□□ -1.81
COL28A1Q2UY09 LINC01745-201ENST00000430921 372 ntTSL 5 BASIC3.73□□□□□ -1.81
COL28A1Q2UY09 AL162734.1-201ENST00000432858 157 ntTSL 5 BASIC3.73□□□□□ -1.81
COL28A1Q2UY09 TCF7L1-IT1-201ENST00000433581 458 ntTSL 3 BASIC3.73□□□□□ -1.81
COL28A1Q2UY09 AL354977.1-201ENST00000438147 679 ntTSL 5 BASIC3.73□□□□□ -1.81
COL28A1Q2UY09 AL512271.1-201ENST00000439878 434 ntTSL 3 BASIC3.73□□□□□ -1.81
COL28A1Q2UY09 AC092641.1-201ENST00000440229 772 ntBASIC3.73□□□□□ -1.81
COL28A1Q2UY09 AC112653.1-201ENST00000443851 386 ntBASIC3.73□□□□□ -1.81
COL28A1Q2UY09 TAF9P1-201ENST00000445421 515 ntBASIC3.73□□□□□ -1.81
COL28A1Q2UY09 RPS24P6-201ENST00000452670 400 ntBASIC3.73□□□□□ -1.81
COL28A1Q2UY09 TAF9P2-201ENST00000454958 515 ntBASIC3.73□□□□□ -1.81
COL28A1Q2UY09 MTCO2P18-201ENST00000457151 658 ntBASIC3.73□□□□□ -1.81
COL28A1Q2UY09 UBDP1-202ENST00000457888 382 ntBASIC3.73□□□□□ -1.81
COL28A1Q2UY09 APOA2-210ENST00000491350 263 ntTSL 1 (best) BASIC3.73□□□□□ -1.81
COL28A1Q2UY09 LINC00971-203ENST00000491849 452 ntTSL 3 BASIC3.73□□□□□ -1.81
COL28A1Q2UY09 AC093278.1-201ENST00000494700 600 ntBASIC3.73□□□□□ -1.81
COL28A1Q2UY09 AC004069.2-201ENST00000505438 1114 ntBASIC3.73□□□□□ -1.81
COL28A1Q2UY09 RNU7-143P-201ENST00000516781 65 ntBASIC3.73□□□□□ -1.81
COL28A1Q2UY09 AC060788.1-201ENST00000521318 469 ntBASIC3.73□□□□□ -1.81
COL28A1Q2UY09 AP003733.3-201ENST00000524942 788 ntTSL 2 BASIC3.73□□□□□ -1.81
COL28A1Q2UY09 AC108471.2-204ENST00000526807 784 ntTSL 5 BASIC3.73□□□□□ -1.81
COL28A1Q2UY09 AP002992.1-202ENST00000530842 551 ntTSL 2 BASIC3.73□□□□□ -1.81
COL28A1Q2UY09 AC135279.1-201ENST00000543493 504 ntBASIC3.73□□□□□ -1.81
COL28A1Q2UY09 LINC02386-202ENST00000551287 564 ntTSL 4 BASIC3.73□□□□□ -1.81
COL28A1Q2UY09 CBX3P5-201ENST00000552017 521 ntBASIC3.73□□□□□ -1.81
COL28A1Q2UY09 AC009292.2-201ENST00000558889 291 ntTSL 5 BASIC3.73□□□□□ -1.81
COL28A1Q2UY09 LINC2194-202ENST00000567624 506 ntTSL 3 BASIC3.73□□□□□ -1.81
COL28A1Q2UY09 AC012414.6-201ENST00000568241 401 ntBASIC3.73□□□□□ -1.81
COL28A1Q2UY09 AC012417.1-201ENST00000582307 1039 ntBASIC3.73□□□□□ -1.81
COL28A1Q2UY09 AC104984.5-201ENST00000586878 94 ntBASIC3.73□□□□□ -1.81
COL28A1Q2UY09 TPMTP1-201ENST00000592307 737 ntBASIC3.73□□□□□ -1.81
COL28A1Q2UY09 AC104534.1-201ENST00000594558 566 ntTSL 4 BASIC3.73□□□□□ -1.81
COL28A1Q2UY09 XIAPP1-201ENST00000603162 600 ntBASIC3.73□□□□□ -1.81
COL28A1Q2UY09 AC245008.1-201ENST00000608123 476 ntBASIC3.73□□□□□ -1.81
COL28A1Q2UY09 uc_338.32-201ENST00000615087 172 ntBASIC3.73□□□□□ -1.81
COL28A1Q2UY09 AL450472.3-201ENST00000615578 367 ntBASIC3.73□□□□□ -1.81
COL28A1Q2UY09 AC079597.1-201ENST00000624306 508 ntBASIC3.73□□□□□ -1.81
COL28A1Q2UY09 AC138649.5-201ENST00000637456 137 ntBASIC3.73□□□□□ -1.81
COL28A1Q2UY09 MYCBP2-211ENST00000544440 14664 ntAPPRIS P1 TSL 1 (best) BASIC3.73□□□□□ -1.81
COL28A1Q2UY09 AC116096.1-201ENST00000566804 2314 ntBASIC3.73□□□□□ -1.81
COL28A1Q2UY09 MAPK10-373ENST00000641983 6772 ntBASIC3.73□□□□□ -1.81
COL28A1Q2UY09 STXBP4-201ENST00000376352 15590 ntAPPRIS P1 TSL 2 BASIC3.73□□□□□ -1.81
COL28A1Q2UY09 TFPI-201ENST00000233156 3885 ntAPPRIS P1 TSL 1 (best) BASIC3.73□□□□□ -1.81
COL28A1Q2UY09 AL353746.1-201ENST00000566293 6881 ntBASIC3.73□□□□□ -1.81
COL28A1Q2UY09 MTND5P33-201ENST00000571250 1450 ntBASIC3.73□□□□□ -1.81
COL28A1Q2UY09 TLR10-206ENST00000508334 2616 ntAPPRIS P1 TSL 1 (best) BASIC3.73□□□□□ -1.81
COL28A1Q2UY09 IQCH-206ENST00000546225 3112 ntTSL 5 BASIC3.73□□□□□ -1.81
COL28A1Q2UY09 THEMIS-202ENST00000368250 4101 ntAPPRIS P3 TSL 5 BASIC3.72□□□□□ -1.81
COL28A1Q2UY09 NUDT12-201ENST00000230792 3492 ntAPPRIS P1 TSL 1 (best) BASIC3.72□□□□□ -1.81
COL28A1Q2UY09 DOCK7-202ENST00000340370 6731 ntAPPRIS P3 TSL 2 BASIC3.72□□□□□ -1.81
COL28A1Q2UY09 CACNB4-260ENST00000637762 3800 ntTSL 5 BASIC3.72□□□□□ -1.81
COL28A1Q2UY09 RNF128-202ENST00000324342 2654 ntTSL 1 (best) BASIC3.72□□□□□ -1.81
COL28A1Q2UY09 AL390237.1-201ENST00000404226 1415 ntBASIC3.72□□□□□ -1.81
COL28A1Q2UY09 PREPL-207ENST00000409957 4703 ntTSL 5 BASIC3.72□□□□□ -1.81
COL28A1Q2UY09 CCNH-206ENST00000508855 2391 ntTSL 1 (best) BASIC3.72□□□□□ -1.81
COL28A1Q2UY09 FRG1BP-201ENST00000278882 761 ntBASIC3.72□□□□□ -1.81
COL28A1Q2UY09 TTTY13-201ENST00000330337 659 ntTSL 1 (best) BASIC3.72□□□□□ -1.81
COL28A1Q2UY09 FGF7P2-201ENST00000332473 296 ntBASIC3.72□□□□□ -1.81
COL28A1Q2UY09 Y_RNA.548-201ENST00000384656 105 ntBASIC3.72□□□□□ -1.81
COL28A1Q2UY09 SNORD115.1-201ENST00000391109 76 ntBASIC3.72□□□□□ -1.81
COL28A1Q2UY09 AC079163.1-201ENST00000418416 407 ntTSL 2 BASIC3.72□□□□□ -1.81
COL28A1Q2UY09 USP9YP36-201ENST00000424581 829 ntBASIC3.72□□□□□ -1.81
COL28A1Q2UY09 BBS9-205ENST00000425508 1252 ntTSL 1 (best) BASIC3.72□□□□□ -1.81
COL28A1Q2UY09 AL358472.1-201ENST00000431295 329 ntBASIC3.72□□□□□ -1.81
COL28A1Q2UY09 UBE2V1P13-201ENST00000436983 439 ntBASIC3.72□□□□□ -1.81
COL28A1Q2UY09 AL592447.1-201ENST00000447592 540 ntBASIC3.72□□□□□ -1.81
COL28A1Q2UY09 RPS20P32-201ENST00000456044 356 ntBASIC3.72□□□□□ -1.81
COL28A1Q2UY09 AC096554.1-201ENST00000458182 529 ntTSL 5 BASIC3.72□□□□□ -1.81
COL28A1Q2UY09 AC005921.1-201ENST00000510589 286 ntBASIC3.72□□□□□ -1.81
COL28A1Q2UY09 FABP5P5-201ENST00000515537 406 ntBASIC3.72□□□□□ -1.81
COL28A1Q2UY09 Y_RNA.695-201ENST00000516715 107 ntBASIC3.72□□□□□ -1.81
COL28A1Q2UY09 RNU6-528P-201ENST00000516926 100 ntBASIC3.72□□□□□ -1.81
COL28A1Q2UY09 AC068672.1-201ENST00000520391 328 ntTSL 3 BASIC3.72□□□□□ -1.81
COL28A1Q2UY09 AC103726.1-201ENST00000520785 474 ntTSL 2 BASIC3.72□□□□□ -1.81
COL28A1Q2UY09 AC007991.1-201ENST00000522680 631 ntBASIC3.72□□□□□ -1.81
COL28A1Q2UY09 THEM7P-202ENST00000525689 764 ntTSL 3 BASIC3.72□□□□□ -1.81
COL28A1Q2UY09 OR5M10-201ENST00000526812 1052 ntAPPRIS P1 BASIC3.72□□□□□ -1.81
COL28A1Q2UY09 AC126177.3-201ENST00000551839 688 ntBASIC3.72□□□□□ -1.81
COL28A1Q2UY09 AL355922.1-201ENST00000555624 337 ntTSL 3 BASIC3.72□□□□□ -1.81
COL28A1Q2UY09 AC010653.1-201ENST00000571108 881 ntBASIC3.72□□□□□ -1.81
COL28A1Q2UY09 AC034268.2-201ENST00000571784 482 ntBASIC3.72□□□□□ -1.81
COL28A1Q2UY09 AC025627.2-201ENST00000576220 160 ntBASIC3.72□□□□□ -1.81
COL28A1Q2UY09 AP001180.2-201ENST00000579413 422 ntTSL 5 BASIC3.72□□□□□ -1.81
COL28A1Q2UY09 LINC02079-201ENST00000582518 294 ntTSL 2 BASIC3.72□□□□□ -1.81
Retrieved 100 of 98,524 protein–RNA pairs in 103 ms