Protein–RNA interactions for Protein: Q15459

SF3A1, Splicing factor 3A subunit 1, humanhuman

Known RBP Predictions only

Length 793 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1Q15459 HOTAIRM1_2.1-201ENST00000616712 215 ntBASIC5.14□□□□□ -1.59
SF3A1Q15459 ZNF345-216ENST00000640438 963 ntTSL 5 BASIC5.14□□□□□ -1.59
SF3A1Q15459 ZNF415-201ENST00000243643 2270 ntAPPRIS P3 TSL 1 (best) BASIC5.14□□□□□ -1.59
SF3A1Q15459 QSER1-201ENST00000399302 9335 ntAPPRIS P1 TSL 1 (best) BASIC5.14□□□□□ -1.59
SF3A1Q15459 C6orf10-203ENST00000442822 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC5.14□□□□□ -1.59
SF3A1Q15459 RC3H2-203ENST00000373670 9248 ntAPPRIS P1 TSL 5 BASIC5.14□□□□□ -1.59
SF3A1Q15459 ARL15-202ENST00000504924 2486 ntAPPRIS P2 TSL 1 (best) BASIC5.14□□□□□ -1.59
SF3A1Q15459 ARL15-207ENST00000620747 2486 ntAPPRIS ALT1 TSL 5 BASIC5.14□□□□□ -1.59
SF3A1Q15459 C9orf72-203ENST00000380003 3200 ntAPPRIS P1 TSL 1 (best) BASIC5.14□□□□□ -1.59
SF3A1Q15459 ORC4-201ENST00000264169 6598 ntAPPRIS P1 TSL 5 BASIC5.13□□□□□ -1.59
SF3A1Q15459 ADAM29-214ENST00000618444 2949 ntAPPRIS P1 TSL 4 BASIC5.13□□□□□ -1.59
SF3A1Q15459 SMC6-203ENST00000402989 3729 ntAPPRIS P1 TSL 2 BASIC5.13□□□□□ -1.59
SF3A1Q15459 F8-202ENST00000360256 9059 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
SF3A1Q15459 DNAH6-201ENST00000237449 12666 ntAPPRIS P1 TSL 5 BASIC5.13□□□□□ -1.59
SF3A1Q15459 LINC02432-202ENST00000509161 2839 ntTSL 2 BASIC5.13□□□□□ -1.59
SF3A1Q15459 AC116667.1-201ENST00000604855 2072 ntBASIC5.13□□□□□ -1.59
SF3A1Q15459 Y_RNA.9-201ENST00000362354 101 ntBASIC5.13□□□□□ -1.59
SF3A1Q15459 RNU6-50P-201ENST00000362356 103 ntBASIC5.13□□□□□ -1.59
SF3A1Q15459 Y_RNA.22-201ENST00000362492 102 ntBASIC5.13□□□□□ -1.59
SF3A1Q15459 RNU6-1120P-201ENST00000362988 108 ntBASIC5.13□□□□□ -1.59
SF3A1Q15459 RNU6-701P-201ENST00000384059 107 ntBASIC5.13□□□□□ -1.59
SF3A1Q15459 MIR192-201ENST00000384915 110 ntBASIC5.13□□□□□ -1.59
SF3A1Q15459 TRAV7-201ENST00000390429 337 ntAPPRIS P1 BASIC5.13□□□□□ -1.59
SF3A1Q15459 SDHCP2-201ENST00000398565 501 ntBASIC5.13□□□□□ -1.59
SF3A1Q15459 RNA5SP146-201ENST00000410743 123 ntBASIC5.13□□□□□ -1.59
SF3A1Q15459 AC018630.2-202ENST00000422992 927 ntBASIC5.13□□□□□ -1.59
SF3A1Q15459 ELOCP14-201ENST00000428070 331 ntBASIC5.13□□□□□ -1.59
SF3A1Q15459 AL138759.1-201ENST00000432120 645 ntTSL 2 BASIC5.13□□□□□ -1.59
SF3A1Q15459 MIR548XHG-203ENST00000437492 853 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
SF3A1Q15459 KRR1-202ENST00000438169 975 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
SF3A1Q15459 ELOCP7-201ENST00000439968 331 ntBASIC5.13□□□□□ -1.59
SF3A1Q15459 MTATP6P30-201ENST00000443540 664 ntBASIC5.13□□□□□ -1.59
SF3A1Q15459 RPL23AP43-201ENST00000446445 471 ntBASIC5.13□□□□□ -1.59
SF3A1Q15459 RPL23AP20-201ENST00000447965 421 ntBASIC5.13□□□□□ -1.59
SF3A1Q15459 AC007879.3-202ENST00000448786 823 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
SF3A1Q15459 AC034195.1-202ENST00000451031 610 ntTSL 3 BASIC5.13□□□□□ -1.59
SF3A1Q15459 AC008897.1-201ENST00000494006 347 ntBASIC5.13□□□□□ -1.59
SF3A1Q15459 AC019235.1-201ENST00000503847 207 ntBASIC5.13□□□□□ -1.59
SF3A1Q15459 AL359273.1-203ENST00000506295 602 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
SF3A1Q15459 AL359273.1-201ENST00000510918 627 ntBASIC5.13□□□□□ -1.59
SF3A1Q15459 AC011352.1-201ENST00000512300 793 ntBASIC5.13□□□□□ -1.59
SF3A1Q15459 LINC00616-203ENST00000512536 568 ntTSL 4 BASIC5.13□□□□□ -1.59
SF3A1Q15459 FTH1P9-201ENST00000513251 355 ntBASIC5.13□□□□□ -1.59
SF3A1Q15459 AP003034.1-201ENST00000534621 422 ntBASIC5.13□□□□□ -1.59
SF3A1Q15459 AL445074.1-201ENST00000555362 318 ntTSL 2 BASIC5.13□□□□□ -1.59
SF3A1Q15459 AL359212.1-201ENST00000556608 614 ntBASIC5.13□□□□□ -1.59
SF3A1Q15459 HMGB1P33-201ENST00000563485 527 ntBASIC5.13□□□□□ -1.59
SF3A1Q15459 RPL23AP87-202ENST00000573039 466 ntBASIC5.13□□□□□ -1.59
SF3A1Q15459 AC025449.1-201ENST00000603896 529 ntBASIC5.13□□□□□ -1.59
SF3A1Q15459 AC244093.3-201ENST00000615419 411 ntTSL 3 BASIC5.13□□□□□ -1.59
SF3A1Q15459 LINC01515-217ENST00000620859 694 ntTSL 5 BASIC5.13□□□□□ -1.59
SF3A1Q15459 Metazoa_SRP.193-201ENST00000622007 277 ntBASIC5.13□□□□□ -1.59
SF3A1Q15459 AC010300.1-201ENST00000600671 5134 ntBASIC5.13□□□□□ -1.59
SF3A1Q15459 NCOA1-202ENST00000348332 6895 ntAPPRIS P4 TSL 1 (best) BASIC5.13□□□□□ -1.59
SF3A1Q15459 EYA4-202ENST00000355286 4317 ntAPPRIS ALT1 TSL 1 (best) BASIC5.13□□□□□ -1.59
SF3A1Q15459 OR4G2P-202ENST00000641004 1759 ntBASIC5.13□□□□□ -1.59
SF3A1Q15459 N4BP2L2-201ENST00000267068 9427 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
SF3A1Q15459 ABCB5-201ENST00000258738 2906 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
SF3A1Q15459 BRCA2-201ENST00000380152 11986 ntAPPRIS P1 TSL 5 BASIC5.13□□□□□ -1.59
SF3A1Q15459 ADGRL3-215ENST00000512091 12636 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
SF3A1Q15459 GPR183-201ENST00000376414 1700 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
SF3A1Q15459 SMG1P1-206ENST00000431681 2913 ntTSL 2 BASIC5.12□□□□□ -1.59
SF3A1Q15459 Y_RNA.367-201ENST00000365544 101 ntBASIC5.12□□□□□ -1.59
SF3A1Q15459 SNORD115-47-201ENST00000391226 86 ntBASIC5.12□□□□□ -1.59
SF3A1Q15459 MIR298-201ENST00000401212 88 ntBASIC5.12□□□□□ -1.59
SF3A1Q15459 RPS4XP9-201ENST00000405151 780 ntBASIC5.12□□□□□ -1.59
SF3A1Q15459 AL603766.1-201ENST00000407763 664 ntBASIC5.12□□□□□ -1.59
SF3A1Q15459 RNA5SP129-201ENST00000410276 118 ntBASIC5.12□□□□□ -1.59
SF3A1Q15459 DPYD-AS1-201ENST00000422980 533 ntTSL 3 BASIC5.12□□□□□ -1.59
SF3A1Q15459 MOBP-206ENST00000428261 561 ntAPPRIS ALT2 TSL 4 BASIC5.12□□□□□ -1.59
SF3A1Q15459 AC008278.2-201ENST00000438178 409 ntTSL 3 BASIC5.12□□□□□ -1.59
SF3A1Q15459 MACC1-AS1-201ENST00000439285 639 ntTSL 3 BASIC5.12□□□□□ -1.59
SF3A1Q15459 AL512326.1-201ENST00000443050 721 ntBASIC5.12□□□□□ -1.59
SF3A1Q15459 LINC00278-202ENST00000444263 587 ntTSL 3 BASIC5.12□□□□□ -1.59
SF3A1Q15459 AC133473.1-201ENST00000455173 299 ntBASIC5.12□□□□□ -1.59
SF3A1Q15459 AC027673.1-201ENST00000456245 405 ntBASIC5.12□□□□□ -1.59
SF3A1Q15459 VN1R17P-201ENST00000472048 1090 ntBASIC5.12□□□□□ -1.59
SF3A1Q15459 MRPS33-209ENST00000496958 688 ntAPPRIS P1 TSL 3 BASIC5.12□□□□□ -1.59
SF3A1Q15459 RPS27AP13-201ENST00000498403 237 ntBASIC5.12□□□□□ -1.59
SF3A1Q15459 AC093824.1-201ENST00000508796 343 ntBASIC5.12□□□□□ -1.59
SF3A1Q15459 LINC02174-201ENST00000508977 553 ntTSL 3 BASIC5.12□□□□□ -1.59
SF3A1Q15459 ZCCHC10-206ENST00000509008 608 ntAPPRIS ALT2 TSL 2 BASIC5.12□□□□□ -1.59
SF3A1Q15459 AC117522.1-201ENST00000509821 380 ntBASIC5.12□□□□□ -1.59
SF3A1Q15459 ARL2BPP6-201ENST00000512757 439 ntBASIC5.12□□□□□ -1.59
SF3A1Q15459 LINC02315-201ENST00000515218 696 ntTSL 5 BASIC5.12□□□□□ -1.59
SF3A1Q15459 AC093206.1-201ENST00000515364 497 ntTSL 3 BASIC5.12□□□□□ -1.59
SF3A1Q15459 RN7SKP289-201ENST00000517244 295 ntBASIC5.12□□□□□ -1.59
SF3A1Q15459 AC022679.1-202ENST00000520251 376 ntTSL 3 BASIC5.12□□□□□ -1.59
SF3A1Q15459 LINC02390-201ENST00000541404 560 ntTSL 4 BASIC5.12□□□□□ -1.59
SF3A1Q15459 AL512360.1-201ENST00000555346 234 ntBASIC5.12□□□□□ -1.59
SF3A1Q15459 AC026992.1-202ENST00000558454 421 ntTSL 3 BASIC5.12□□□□□ -1.59
SF3A1Q15459 AC215217.1-201ENST00000562162 347 ntTSL 3 BASIC5.12□□□□□ -1.59
SF3A1Q15459 PWRN1-205ENST00000565295 465 ntTSL 3 BASIC5.12□□□□□ -1.59
SF3A1Q15459 AL160290.3-201ENST00000604869 165 ntBASIC5.12□□□□□ -1.59
SF3A1Q15459 AC006023.2-201ENST00000609916 167 ntBASIC5.12□□□□□ -1.59
SF3A1Q15459 MIR378J-201ENST00000611988 109 ntBASIC5.12□□□□□ -1.59
SF3A1Q15459 BX664730.1-201ENST00000616196 800 ntTSL 5 BASIC5.12□□□□□ -1.59
SF3A1Q15459 AC007546.2-201ENST00000623996 360 ntBASIC5.12□□□□□ -1.59
SF3A1Q15459 NANOGNB-202ENST00000640040 824 ntAPPRIS ALT2 TSL 5 BASIC5.12□□□□□ -1.59
SF3A1Q15459 AC125257.1-201ENST00000560400 2930 ntBASIC5.12□□□□□ -1.59
Retrieved 100 of 98,524 protein–RNA pairs in 100.3 ms