Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 RPS7P13-201ENST00000413955 498 ntBASIC3.23□□□□□ -1.89
SOX3P41225 AC104653.1-201ENST00000420579 578 ntTSL 2 BASIC3.23□□□□□ -1.89
SOX3P41225 AC107081.2-201ENST00000425779 802 ntTSL 5 BASIC3.23□□□□□ -1.89
SOX3P41225 LINC01884-201ENST00000433429 440 ntTSL 3 BASIC3.23□□□□□ -1.89
SOX3P41225 LINC00411-201ENST00000436722 461 ntTSL 3 BASIC3.23□□□□□ -1.89
SOX3P41225 LINC00529-201ENST00000443854 241 ntTSL 2 BASIC3.23□□□□□ -1.89
SOX3P41225 MTND2P4-201ENST00000445034 1004 ntBASIC3.23□□□□□ -1.89
SOX3P41225 AC074327.1-201ENST00000448017 540 ntTSL 2 BASIC3.23□□□□□ -1.89
SOX3P41225 RPL7P52-201ENST00000449200 742 ntBASIC3.23□□□□□ -1.89
SOX3P41225 RBMY2UP-201ENST00000453474 324 ntBASIC3.23□□□□□ -1.89
SOX3P41225 ZNF114P1-201ENST00000453500 292 ntBASIC3.23□□□□□ -1.89
SOX3P41225 AL136097.1-201ENST00000456945 913 ntBASIC3.23□□□□□ -1.89
SOX3P41225 AL122001.1-201ENST00000457027 370 ntBASIC3.23□□□□□ -1.89
SOX3P41225 AC023598.1-201ENST00000472521 361 ntBASIC3.23□□□□□ -1.89
SOX3P41225 RN7SL442P-201ENST00000473804 320 ntBASIC3.23□□□□□ -1.89
SOX3P41225 ZNF639-206ENST00000484866 1730 ntAPPRIS P1 TSL 2 BASIC3.23□□□□□ -1.89
SOX3P41225 AC109486.1-201ENST00000486833 374 ntBASIC3.23□□□□□ -1.89
SOX3P41225 HMGB1P36-201ENST00000487709 576 ntBASIC3.23□□□□□ -1.89
SOX3P41225 AC106872.3-201ENST00000495104 446 ntBASIC3.23□□□□□ -1.89
SOX3P41225 RPL5P23-201ENST00000496040 868 ntBASIC3.23□□□□□ -1.89
SOX3P41225 LNX1-AS2-201ENST00000502410 347 ntTSL 5 BASIC3.23□□□□□ -1.89
SOX3P41225 DSTNP2-201ENST00000504533 515 ntBASIC3.23□□□□□ -1.89
SOX3P41225 IL7R-204ENST00000506850 1004 ntTSL 2 BASIC3.23□□□□□ -1.89
SOX3P41225 AC117522.2-201ENST00000510049 657 ntBASIC3.23□□□□□ -1.89
SOX3P41225 AC104619.2-201ENST00000514293 646 ntTSL 3 BASIC3.23□□□□□ -1.89
SOX3P41225 Vault.1-201ENST00000516474 102 ntBASIC3.23□□□□□ -1.89
SOX3P41225 AC026991.1-201ENST00000520815 463 ntTSL 3 BASIC3.23□□□□□ -1.89
SOX3P41225 LRRTM2-203ENST00000521094 1182 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
SOX3P41225 LINC02442-202ENST00000540761 382 ntTSL 2 BASIC3.23□□□□□ -1.89
SOX3P41225 AL133166.1-201ENST00000551040 1034 ntTSL 4 BASIC3.23□□□□□ -1.89
SOX3P41225 LINC01467-201ENST00000554211 1187 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
SOX3P41225 AL355097.1-201ENST00000555889 539 ntTSL 4 BASIC3.23□□□□□ -1.89
SOX3P41225 PWRN1-202ENST00000562501 642 ntTSL 3 BASIC3.23□□□□□ -1.89
SOX3P41225 PCMTD1P2-201ENST00000565017 355 ntBASIC3.23□□□□□ -1.89
SOX3P41225 AC106796.1-201ENST00000577173 615 ntTSL 3 BASIC3.23□□□□□ -1.89
SOX3P41225 MIR544B-201ENST00000582372 78 ntBASIC3.23□□□□□ -1.89
SOX3P41225 IGKV1OR2-6-201ENST00000603485 277 ntBASIC3.23□□□□□ -1.89
SOX3P41225 AC112187.2-201ENST00000604345 283 ntBASIC3.23□□□□□ -1.89
SOX3P41225 AC004853.1-201ENST00000604902 698 ntBASIC3.23□□□□□ -1.89
SOX3P41225 AC055876.5-201ENST00000605667 259 ntBASIC3.23□□□□□ -1.89
SOX3P41225 RBM12B-AS1-201ENST00000623283 653 ntBASIC3.23□□□□□ -1.89
SOX3P41225 AL356266.1-201ENST00000623311 483 ntBASIC3.23□□□□□ -1.89
SOX3P41225 AC091965.5-201ENST00000624785 342 ntBASIC3.23□□□□□ -1.89
SOX3P41225 CGA-204ENST00000627148 1010 ntAPPRIS P1 TSL 1 (best) BASIC3.23□□□□□ -1.89
SOX3P41225 MIR7153-201ENST00000637758 57 ntBASIC3.23□□□□□ -1.89
SOX3P41225 CCSER2-201ENST00000224756 7664 ntAPPRIS P1 TSL 5 BASIC3.23□□□□□ -1.89
SOX3P41225 WDR49-207ENST00000479765 2108 ntTSL 2 BASIC3.23□□□□□ -1.89
SOX3P41225 HELZ-201ENST00000358691 13810 ntTSL 1 (best) BASIC3.22□□□□□ -1.89
SOX3P41225 AC058791.1-201ENST00000608412 3198 ntBASIC3.22□□□□□ -1.89
SOX3P41225 OR5J2-201ENST00000312298 939 ntAPPRIS P1 BASIC3.22□□□□□ -1.89
SOX3P41225 OR2M2-201ENST00000359682 1044 ntAPPRIS P1 BASIC3.22□□□□□ -1.89
SOX3P41225 MT-ND3-201ENST00000361227 346 ntAPPRIS P1 BASIC3.22□□□□□ -1.89
SOX3P41225 RNU6-501P-201ENST00000364072 100 ntBASIC3.22□□□□□ -1.89
SOX3P41225 RNU6-744P-201ENST00000365557 107 ntBASIC3.22□□□□□ -1.89
SOX3P41225 C1orf105-203ENST00000367727 985 ntAPPRIS P1 TSL 1 (best) BASIC3.22□□□□□ -1.89
SOX3P41225 LINC01545-201ENST00000377879 521 ntTSL 1 (best) BASIC3.22□□□□□ -1.89
SOX3P41225 RNU6-1316P-201ENST00000384242 108 ntBASIC3.22□□□□□ -1.89
SOX3P41225 AC239803.1-203ENST00000411978 452 ntTSL 2 BASIC3.22□□□□□ -1.89
SOX3P41225 AC091705.1-201ENST00000412197 209 ntTSL 5 BASIC3.22□□□□□ -1.89
SOX3P41225 AC068295.1-201ENST00000413056 153 ntTSL 3 BASIC3.22□□□□□ -1.89
SOX3P41225 AC092447.6-201ENST00000414578 210 ntBASIC3.22□□□□□ -1.89
SOX3P41225 GRM7-AS1-201ENST00000420230 430 ntTSL 3 BASIC3.22□□□□□ -1.89
SOX3P41225 LINC00397-201ENST00000422074 344 ntTSL 3 BASIC3.22□□□□□ -1.89
SOX3P41225 TEX41-204ENST00000423031 491 ntTSL 4 BASIC3.22□□□□□ -1.89
SOX3P41225 AL445669.1-201ENST00000426743 755 ntBASIC3.22□□□□□ -1.89
SOX3P41225 AC017048.2-201ENST00000431455 822 ntTSL 3 BASIC3.22□□□□□ -1.89
SOX3P41225 MTND1P30-201ENST00000441241 901 ntBASIC3.22□□□□□ -1.89
SOX3P41225 AL831737.1-201ENST00000441288 271 ntBASIC3.22□□□□□ -1.89
SOX3P41225 AC118469.1-201ENST00000442943 488 ntBASIC3.22□□□□□ -1.89
SOX3P41225 AC006042.4-201ENST00000451066 692 ntTSL 5 BASIC3.22□□□□□ -1.89
SOX3P41225 SATB1-AS1-204ENST00000453361 726 ntTSL 3 BASIC3.22□□□□□ -1.89
SOX3P41225 KATNBL1P6-201ENST00000453433 915 ntBASIC3.22□□□□□ -1.89
SOX3P41225 LINC01210-201ENST00000465283 625 ntTSL 2 BASIC3.22□□□□□ -1.89
SOX3P41225 RN7SL594P-201ENST00000470590 287 ntBASIC3.22□□□□□ -1.89
SOX3P41225 AC021678.1-201ENST00000505195 936 ntBASIC3.22□□□□□ -1.89
SOX3P41225 AC097467.3-213ENST00000508191 726 ntTSL 3 BASIC3.22□□□□□ -1.89
SOX3P41225 AC022118.1-201ENST00000512352 547 ntTSL 5 BASIC3.22□□□□□ -1.89
SOX3P41225 LINC02500-201ENST00000512547 493 ntTSL 3 BASIC3.22□□□□□ -1.89
SOX3P41225 GYPA-209ENST00000512789 258 ntTSL 1 (best) BASIC3.22□□□□□ -1.89
SOX3P41225 LINC02484-202ENST00000514877 546 ntTSL 3 BASIC3.22□□□□□ -1.89
SOX3P41225 AC018437.2-201ENST00000517369 389 ntTSL 5 BASIC3.22□□□□□ -1.89
SOX3P41225 AC103952.1-201ENST00000521872 590 ntTSL 3 BASIC3.22□□□□□ -1.89
SOX3P41225 AP002833.1-201ENST00000530572 566 ntTSL 3 BASIC3.22□□□□□ -1.89
SOX3P41225 AP001458.1-201ENST00000532626 92 ntTSL 3 BASIC3.22□□□□□ -1.89
SOX3P41225 LINC01491-201ENST00000558434 505 ntTSL 3 BASIC3.22□□□□□ -1.89
SOX3P41225 AC120045.1-201ENST00000563502 251 ntTSL 3 BASIC3.22□□□□□ -1.89
SOX3P41225 AC139426.2-201ENST00000568289 251 ntTSL 3 BASIC3.22□□□□□ -1.89
SOX3P41225 AC003687.1-201ENST00000578040 427 ntTSL 3 BASIC3.22□□□□□ -1.89
SOX3P41225 LINC01470-205ENST00000584829 681 ntTSL 3 BASIC3.22□□□□□ -1.89
SOX3P41225 AC008507.1-201ENST00000587506 734 ntBASIC3.22□□□□□ -1.89
SOX3P41225 BNIP3P22-201ENST00000593399 556 ntBASIC3.22□□□□□ -1.89
SOX3P41225 SATB1-AS1-207ENST00000593741 955 ntTSL 5 BASIC3.22□□□□□ -1.89
SOX3P41225 BNIP3P23-201ENST00000599655 511 ntBASIC3.22□□□□□ -1.89
SOX3P41225 AF131215.7-201ENST00000602443 707 ntBASIC3.22□□□□□ -1.89
SOX3P41225 AP000403.1-201ENST00000603349 851 ntBASIC3.22□□□□□ -1.89
SOX3P41225 OR2AS2P-201ENST00000606902 342 ntBASIC3.22□□□□□ -1.89
SOX3P41225 AC093783.1-201ENST00000612976 329 ntBASIC3.22□□□□□ -1.89
SOX3P41225 AC018755.4-201ENST00000619715 454 ntBASIC3.22□□□□□ -1.89
SOX3P41225 GPRC6A-203ENST00000530250 2310 ntTSL 1 (best) BASIC3.22□□□□□ -1.89
SOX3P41225 LINC00670-201ENST00000313495 2953 ntTSL 2 BASIC3.22□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 87 ms