Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 AC091906.1-201ENST00000511310 391 ntTSL 2 BASIC2.94□□□□□ -1.94
SDC1P18827 LINC02484-202ENST00000514877 546 ntTSL 3 BASIC2.94□□□□□ -1.94
SDC1P18827 AC108467.1-201ENST00000515623 672 ntTSL 3 BASIC2.94□□□□□ -1.94
SDC1P18827 SNORA67.7-201ENST00000516664 135 ntBASIC2.94□□□□□ -1.94
SDC1P18827 ELOC-204ENST00000519487 814 ntAPPRIS P1 TSL 2 BASIC2.94□□□□□ -1.94
SDC1P18827 COX6CP8-201ENST00000522620 226 ntBASIC2.94□□□□□ -1.94
SDC1P18827 AC090539.1-201ENST00000523907 434 ntTSL 3 BASIC2.94□□□□□ -1.94
SDC1P18827 AC090857.2-201ENST00000526362 723 ntTSL 2 BASIC2.94□□□□□ -1.94
SDC1P18827 SNRPGP16-201ENST00000533275 226 ntBASIC2.94□□□□□ -1.94
SDC1P18827 AC091534.1-202ENST00000549953 468 ntTSL 5 BASIC2.94□□□□□ -1.94
SDC1P18827 AF099810.1-201ENST00000554219 525 ntTSL 3 BASIC2.94□□□□□ -1.94
SDC1P18827 LINC01491-202ENST00000558792 439 ntTSL 3 BASIC2.94□□□□□ -1.94
SDC1P18827 AC020891.3-201ENST00000560011 363 ntTSL 3 BASIC2.94□□□□□ -1.94
SDC1P18827 FAM60BP-201ENST00000578364 658 ntBASIC2.94□□□□□ -1.94
SDC1P18827 AC037487.2-201ENST00000581796 537 ntTSL 3 BASIC2.94□□□□□ -1.94
SDC1P18827 VN1R82P-201ENST00000601481 356 ntBASIC2.94□□□□□ -1.94
SDC1P18827 AC234772.3-201ENST00000602277 528 ntBASIC2.94□□□□□ -1.94
SDC1P18827 AC034229.4-201ENST00000607861 441 ntBASIC2.94□□□□□ -1.94
SDC1P18827 AC006133.1-201ENST00000617106 264 ntBASIC2.94□□□□□ -1.94
SDC1P18827 AL357080.1-201ENST00000617394 239 ntBASIC2.94□□□□□ -1.94
SDC1P18827 MUCL1-205ENST00000619042 243 ntAPPRIS ALT2 TSL 5 BASIC2.94□□□□□ -1.94
SDC1P18827 AC011330.2-201ENST00000621680 635 ntBASIC2.94□□□□□ -1.94
SDC1P18827 AP002782.1-201ENST00000623107 614 ntBASIC2.94□□□□□ -1.94
SDC1P18827 MUC7-202ENST00000413702 2540 ntAPPRIS P2 TSL 4 BASIC2.94□□□□□ -1.94
SDC1P18827 EYS-204ENST00000370621 10485 ntAPPRIS ALT2 TSL 1 (best) BASIC2.94□□□□□ -1.94
SDC1P18827 ABCG2-204ENST00000515655 4276 ntTSL 1 (best) BASIC2.94□□□□□ -1.94
SDC1P18827 PHF3-202ENST00000393387 6947 ntAPPRIS P1 TSL 1 (best) BASIC2.94□□□□□ -1.94
SDC1P18827 DNAH12-208ENST00000495027 12146 ntAPPRIS P1 TSL 5 BASIC2.93□□□□□ -1.94
SDC1P18827 VSTM2A-OT1-201ENST00000456049 3031 ntTSL 1 (best) BASIC2.93□□□□□ -1.94
SDC1P18827 ISPD-AS1-202ENST00000438573 2252 ntTSL 1 (best) BASIC2.93□□□□□ -1.94
SDC1P18827 SCFD1-207ENST00000544052 2058 ntTSL 2 BASIC2.93□□□□□ -1.94
SDC1P18827 DDX43P2-201ENST00000604753 1354 ntBASIC2.93□□□□□ -1.94
SDC1P18827 CXCL10-201ENST00000306602 1176 ntAPPRIS P1 TSL 1 (best) BASIC2.93□□□□□ -1.94
SDC1P18827 GYPA-201ENST00000324022 751 ntAPPRIS ALT2 TSL 1 (best) BASIC2.93□□□□□ -1.94
SDC1P18827 AC073325.2-201ENST00000339545 159 ntBASIC2.93□□□□□ -1.94
SDC1P18827 SNORA4.1-201ENST00000364263 144 ntBASIC2.93□□□□□ -1.94
SDC1P18827 RNU6-777P-201ENST00000364265 104 ntBASIC2.93□□□□□ -1.94
SDC1P18827 DEFB109C-201ENST00000382575 264 ntBASIC2.93□□□□□ -1.94
SDC1P18827 DEFB109B-201ENST00000382656 264 ntBASIC2.93□□□□□ -1.94
SDC1P18827 MIR135A2-201ENST00000384854 100 ntBASIC2.93□□□□□ -1.94
SDC1P18827 SNORD67-201ENST00000390833 111 ntBASIC2.93□□□□□ -1.94
SDC1P18827 RSL24D1P4-201ENST00000400938 484 ntBASIC2.93□□□□□ -1.94
SDC1P18827 MTND4P13-201ENST00000402078 1023 ntBASIC2.93□□□□□ -1.94
SDC1P18827 RNA5SP129-201ENST00000410276 118 ntBASIC2.93□□□□□ -1.94
SDC1P18827 OFD1P1Y-201ENST00000411756 1225 ntBASIC2.93□□□□□ -1.94
SDC1P18827 LANCL1-AS1-201ENST00000416344 714 ntTSL 3 BASIC2.93□□□□□ -1.94
SDC1P18827 RPS24P7-201ENST00000416921 246 ntBASIC2.93□□□□□ -1.94
SDC1P18827 SSXP9-201ENST00000417503 292 ntBASIC2.93□□□□□ -1.94
SDC1P18827 AL137014.1-201ENST00000420490 1226 ntBASIC2.93□□□□□ -1.94
SDC1P18827 MTCO1P39-201ENST00000426148 480 ntBASIC2.93□□□□□ -1.94
SDC1P18827 AC092017.2-201ENST00000427600 362 ntBASIC2.93□□□□□ -1.94
SDC1P18827 AC113331.1-201ENST00000428160 869 ntTSL 2 BASIC2.93□□□□□ -1.94
SDC1P18827 AL080248.1-201ENST00000428954 388 ntTSL 3 BASIC2.93□□□□□ -1.94
SDC1P18827 AC004160.1-205ENST00000428967 577 ntTSL 4 BASIC2.93□□□□□ -1.94
SDC1P18827 TXNL1P1-201ENST00000429528 554 ntBASIC2.93□□□□□ -1.94
SDC1P18827 AC006369.2-201ENST00000431712 384 ntTSL 3 BASIC2.93□□□□□ -1.94
SDC1P18827 RABEPKP1-201ENST00000440529 1026 ntBASIC2.93□□□□□ -1.94
SDC1P18827 AC019330.1-202ENST00000440609 504 ntTSL 4 BASIC2.93□□□□□ -1.94
SDC1P18827 LINC00278-202ENST00000444263 587 ntTSL 3 BASIC2.93□□□□□ -1.94
SDC1P18827 CHODL-AS1-201ENST00000447175 1117 ntTSL 2 BASIC2.93□□□□□ -1.94
SDC1P18827 MTND1P31-201ENST00000449206 961 ntBASIC2.93□□□□□ -1.94
SDC1P18827 RSL24D1P3-201ENST00000449255 495 ntBASIC2.93□□□□□ -1.94
SDC1P18827 ZNF736P8Y-201ENST00000451913 669 ntBASIC2.93□□□□□ -1.94
SDC1P18827 USP9YP10-201ENST00000454868 628 ntBASIC2.93□□□□□ -1.94
SDC1P18827 AL606519.1-201ENST00000458146 580 ntTSL 2 BASIC2.93□□□□□ -1.94
SDC1P18827 AC092754.2-201ENST00000463506 460 ntBASIC2.93□□□□□ -1.94
SDC1P18827 AHI1-208ENST00000488690 712 ntTSL 5 BASIC2.93□□□□□ -1.94
SDC1P18827 SUB1-203ENST00000502897 562 ntAPPRIS P1 TSL 4 BASIC2.93□□□□□ -1.94
SDC1P18827 AC093281.2-201ENST00000510153 597 ntBASIC2.93□□□□□ -1.94
SDC1P18827 AC113385.1-201ENST00000511468 563 ntTSL 4 BASIC2.93□□□□□ -1.94
SDC1P18827 AC010265.1-201ENST00000513509 211 ntBASIC2.93□□□□□ -1.94
SDC1P18827 AC017037.2-201ENST00000513850 890 ntBASIC2.93□□□□□ -1.94
SDC1P18827 RN7SKP43-201ENST00000516173 320 ntBASIC2.93□□□□□ -1.94
SDC1P18827 AC105185.1-201ENST00000518705 535 ntBASIC2.93□□□□□ -1.94
SDC1P18827 OR5M10-201ENST00000526812 1052 ntAPPRIS P1 BASIC2.93□□□□□ -1.94
SDC1P18827 IAPP-204ENST00000539393 409 ntAPPRIS P1 TSL 2 BASIC2.93□□□□□ -1.94
SDC1P18827 OR6C7P-201ENST00000547875 934 ntBASIC2.93□□□□□ -1.94
SDC1P18827 CCNG2P1-201ENST00000549521 1000 ntBASIC2.93□□□□□ -1.94
SDC1P18827 OR4K8P-201ENST00000578842 1048 ntBASIC2.93□□□□□ -1.94
SDC1P18827 AC044873.1-201ENST00000580487 399 ntTSL 3 BASIC2.93□□□□□ -1.94
SDC1P18827 BBIP1P1-201ENST00000602999 279 ntBASIC2.93□□□□□ -1.94
SDC1P18827 DUXAP11-201ENST00000603858 526 ntBASIC2.93□□□□□ -1.94
SDC1P18827 AP001330.4-201ENST00000604350 154 ntBASIC2.93□□□□□ -1.94
SDC1P18827 AC025588.2-201ENST00000604851 466 ntBASIC2.93□□□□□ -1.94
SDC1P18827 MIR663AHG-231ENST00000609044 590 ntTSL 5 BASIC2.93□□□□□ -1.94
SDC1P18827 AL355810.1-201ENST00000614629 552 ntBASIC2.93□□□□□ -1.94
SDC1P18827 PCBP1-AS1-348ENST00000629506 667 ntTSL 5 BASIC2.93□□□□□ -1.94
SDC1P18827 CREBRF-201ENST00000296953 7778 ntAPPRIS P1 TSL 1 (best) BASIC2.93□□□□□ -1.94
SDC1P18827 AC011477.1-204ENST00000623416 1325 ntBASIC2.93□□□□□ -1.94
SDC1P18827 AL672296.1-201ENST00000427780 2158 ntBASIC2.93□□□□□ -1.94
SDC1P18827 DMD-201ENST00000288447 3856 ntTSL 1 (best) BASIC2.93□□□□□ -1.94
SDC1P18827 PHTF2-202ENST00000275575 4541 ntTSL 1 (best) BASIC2.92□□□□□ -1.94
SDC1P18827 AF165147.1-201ENST00000433310 6103 ntTSL 2 BASIC2.92□□□□□ -1.94
SDC1P18827 PRKACB-219ENST00000614872 4306 ntTSL 1 (best) BASIC2.92□□□□□ -1.94
SDC1P18827 POLK-204ENST00000504026 1484 ntTSL 1 (best) BASIC2.92□□□□□ -1.94
SDC1P18827 SNORD113-6-201ENST00000363345 75 ntBASIC2.92□□□□□ -1.94
SDC1P18827 Y_RNA.234-201ENST00000364409 97 ntBASIC2.92□□□□□ -1.94
SDC1P18827 MIR449B-201ENST00000384995 97 ntBASIC2.92□□□□□ -1.94
SDC1P18827 RNA5SP274-201ENST00000410484 108 ntBASIC2.92□□□□□ -1.94
SDC1P18827 PIGPP2-201ENST00000411569 458 ntBASIC2.92□□□□□ -1.94
Retrieved 100 of 98,524 protein–RNA pairs in 93.6 ms