Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 AC008751.2-201ENST00000597885 980 ntBASIC4.74□□□□□ -1.65
HMGB1P09429 AC010320.2-202ENST00000599125 595 ntTSL 4 BASIC4.74□□□□□ -1.65
HMGB1P09429 MIR6868-201ENST00000611215 58 ntBASIC4.74□□□□□ -1.65
HMGB1P09429 SNHG22-203ENST00000617833 660 ntBASIC4.74□□□□□ -1.65
HMGB1P09429 HOTTIP_4.1-201ENST00000618195 165 ntBASIC4.74□□□□□ -1.65
HMGB1P09429 AC215522.3-201ENST00000635602 354 ntTSL 5 BASIC4.74□□□□□ -1.65
HMGB1P09429 MIR492-201ENST00000638676 116 ntBASIC4.74□□□□□ -1.65
HMGB1P09429 LRRC39-201ENST00000342895 1881 ntAPPRIS P1 TSL 5 BASIC4.74□□□□□ -1.65
HMGB1P09429 CCNH-206ENST00000508855 2391 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
HMGB1P09429 RNMT-206ENST00000589866 1879 ntAPPRIS P1 TSL 1 (best) BASIC4.73□□□□□ -1.65
HMGB1P09429 RNU6-140P-201ENST00000384566 108 ntBASIC4.73□□□□□ -1.65
HMGB1P09429 SLC8A1-AS1-201ENST00000413479 800 ntTSL 5 BASIC4.73□□□□□ -1.65
HMGB1P09429 HSFY4P-201ENST00000415994 1181 ntBASIC4.73□□□□□ -1.65
HMGB1P09429 AL390962.1-201ENST00000421507 526 ntTSL 3 BASIC4.73□□□□□ -1.65
HMGB1P09429 GAS5-208ENST00000425771 242 ntTSL 3 BASIC4.73□□□□□ -1.65
HMGB1P09429 KCTD9P3-201ENST00000434597 1169 ntBASIC4.73□□□□□ -1.65
HMGB1P09429 MIR548XHG-203ENST00000437492 853 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
HMGB1P09429 AL139237.2-201ENST00000438454 493 ntTSL 3 BASIC4.73□□□□□ -1.65
HMGB1P09429 RPL22P17-201ENST00000438729 315 ntBASIC4.73□□□□□ -1.65
HMGB1P09429 HMGB1P37-201ENST00000439613 609 ntBASIC4.73□□□□□ -1.65
HMGB1P09429 AC005094.1-201ENST00000440420 368 ntBASIC4.73□□□□□ -1.65
HMGB1P09429 MTATP6P30-201ENST00000443540 664 ntBASIC4.73□□□□□ -1.65
HMGB1P09429 AL139275.2-201ENST00000444731 539 ntTSL 3 BASIC4.73□□□□□ -1.65
HMGB1P09429 AC006458.1-201ENST00000445093 653 ntTSL 3 BASIC4.73□□□□□ -1.65
HMGB1P09429 LINC01474-202ENST00000449235 628 ntTSL 3 BASIC4.73□□□□□ -1.65
HMGB1P09429 AC005871.1-201ENST00000450247 475 ntTSL 3 BASIC4.73□□□□□ -1.65
HMGB1P09429 RBBP6-204ENST00000452655 854 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
HMGB1P09429 C4orf33-204ENST00000502887 1126 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
HMGB1P09429 LINC02269-201ENST00000509968 511 ntTSL 3 BASIC4.73□□□□□ -1.65
HMGB1P09429 AC114797.1-201ENST00000514003 728 ntBASIC4.73□□□□□ -1.65
HMGB1P09429 SNORA31.9-201ENST00000516429 84 ntBASIC4.73□□□□□ -1.65
HMGB1P09429 AC087439.2-201ENST00000519498 552 ntTSL 3 BASIC4.73□□□□□ -1.65
HMGB1P09429 AHI1-212ENST00000528103 441 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
HMGB1P09429 AC107882.1-201ENST00000530837 477 ntTSL 3 BASIC4.73□□□□□ -1.65
HMGB1P09429 AC092112.1-201ENST00000538329 640 ntTSL 3 BASIC4.73□□□□□ -1.65
HMGB1P09429 AC025884.1-201ENST00000556034 378 ntBASIC4.73□□□□□ -1.65
HMGB1P09429 AC069114.1-201ENST00000580927 287 ntTSL 2 BASIC4.73□□□□□ -1.65
HMGB1P09429 AC005899.4-201ENST00000581915 514 ntTSL 4 BASIC4.73□□□□□ -1.65
HMGB1P09429 AC022150.3-201ENST00000599143 880 ntTSL 5 BASIC4.73□□□□□ -1.65
HMGB1P09429 U73023.1-201ENST00000603134 700 ntBASIC4.73□□□□□ -1.65
HMGB1P09429 AL161729.4-201ENST00000604650 476 ntBASIC4.73□□□□□ -1.65
HMGB1P09429 AC004852.3-201ENST00000614131 326 ntBASIC4.73□□□□□ -1.65
HMGB1P09429 AL355493.4-201ENST00000618530 292 ntBASIC4.73□□□□□ -1.65
HMGB1P09429 AL139089.1-201ENST00000620372 975 ntBASIC4.73□□□□□ -1.65
HMGB1P09429 AL136084.2-203ENST00000630758 690 ntTSL 5 BASIC4.73□□□□□ -1.65
HMGB1P09429 AC110079.1-202ENST00000635213 138 ntBASIC4.73□□□□□ -1.65
HMGB1P09429 ERBB4-203ENST00000402597 11699 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
HMGB1P09429 IPO8P1-201ENST00000455509 3109 ntBASIC4.73□□□□□ -1.65
HMGB1P09429 AP004289.2-201ENST00000444413 1457 ntBASIC4.73□□□□□ -1.65
HMGB1P09429 HSPA4L-202ENST00000505726 2639 ntTSL 2 BASIC4.73□□□□□ -1.65
HMGB1P09429 AC007656.2-201ENST00000624902 4547 ntBASIC4.72□□□□□ -1.65
HMGB1P09429 THNSL1-201ENST00000376356 3691 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
HMGB1P09429 Y_RNA.46-201ENST00000362695 102 ntBASIC4.72□□□□□ -1.65
HMGB1P09429 Y_RNA.97-201ENST00000363094 102 ntBASIC4.72□□□□□ -1.65
HMGB1P09429 RPS26P8-201ENST00000393490 348 ntBASIC4.72□□□□□ -1.65
HMGB1P09429 TRIM60P9Y-201ENST00000438459 816 ntBASIC4.72□□□□□ -1.65
HMGB1P09429 AC083863.1-201ENST00000438811 231 ntBASIC4.72□□□□□ -1.65
HMGB1P09429 AL161725.2-201ENST00000442442 403 ntTSL 3 BASIC4.72□□□□□ -1.65
HMGB1P09429 TRIM60P11Y-201ENST00000445313 801 ntBASIC4.72□□□□□ -1.65
HMGB1P09429 DCLRE1CP1-201ENST00000454630 470 ntBASIC4.72□□□□□ -1.65
HMGB1P09429 GPX5-203ENST00000469384 428 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
HMGB1P09429 ATP6V1G3-204ENST00000489986 449 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
HMGB1P09429 AF131216.2-201ENST00000512316 564 ntBASIC4.72□□□□□ -1.65
HMGB1P09429 RN7SKP122-201ENST00000515923 296 ntBASIC4.72□□□□□ -1.65
HMGB1P09429 MIR100HG-221ENST00000534297 572 ntTSL 4 BASIC4.72□□□□□ -1.65
HMGB1P09429 AC073655.2-202ENST00000547927 401 ntTSL 3 BASIC4.72□□□□□ -1.65
HMGB1P09429 IGKV2OR2-8-201ENST00000558710 300 ntBASIC4.72□□□□□ -1.65
HMGB1P09429 AC010547.3-201ENST00000569271 440 ntTSL 2 BASIC4.72□□□□□ -1.65
HMGB1P09429 AL353778.1-201ENST00000603149 408 ntBASIC4.72□□□□□ -1.65
HMGB1P09429 MTCYBP22-201ENST00000603788 447 ntBASIC4.72□□□□□ -1.65
HMGB1P09429 RNU4-89P-201ENST00000607443 133 ntBASIC4.72□□□□□ -1.65
HMGB1P09429 AC006338.2-201ENST00000616864 791 ntBASIC4.72□□□□□ -1.65
HMGB1P09429 AP002791.1-201ENST00000623291 381 ntBASIC4.72□□□□□ -1.65
HMGB1P09429 AC110801.1-201ENST00000623590 212 ntBASIC4.72□□□□□ -1.65
HMGB1P09429 OR2M2-203ENST00000641836 1151 ntAPPRIS P1 BASIC4.72□□□□□ -1.65
HMGB1P09429 AC016588.2-201ENST00000632484 3021 ntBASIC4.72□□□□□ -1.65
HMGB1P09429 EPS15-202ENST00000371730 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC4.71□□□□□ -1.65
HMGB1P09429 LGI1-210ENST00000629035 2251 ntTSL 5 BASIC4.71□□□□□ -1.65
HMGB1P09429 LRRTM4-201ENST00000409088 3616 ntTSL 1 (best) BASIC4.71□□□□□ -1.65
HMGB1P09429 LIG4-201ENST00000356922 4096 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
HMGB1P09429 SAMD3-214ENST00000532763 3690 ntTSL 5 BASIC4.71□□□□□ -1.66
HMGB1P09429 RPL26-201ENST00000293842 524 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
HMGB1P09429 AC126755.2-208ENST00000327792 462 ntBASIC4.71□□□□□ -1.66
HMGB1P09429 AC138969.1-213ENST00000331436 462 ntBASIC4.71□□□□□ -1.66
HMGB1P09429 MIR423-201ENST00000362201 94 ntBASIC4.71□□□□□ -1.66
HMGB1P09429 RNU5F-7P-201ENST00000363696 115 ntBASIC4.71□□□□□ -1.66
HMGB1P09429 SNORA70C-201ENST00000384538 135 ntBASIC4.71□□□□□ -1.66
HMGB1P09429 TAS2R15P-201ENST00000390674 928 ntBASIC4.71□□□□□ -1.66
HMGB1P09429 RNA5SP354-201ENST00000391247 136 ntBASIC4.71□□□□□ -1.66
HMGB1P09429 AL022722.2-201ENST00000402519 180 ntBASIC4.71□□□□□ -1.66
HMGB1P09429 AC062039.1-201ENST00000414394 565 ntTSL 2 BASIC4.71□□□□□ -1.66
HMGB1P09429 AC092941.1-201ENST00000415940 427 ntTSL 5 BASIC4.71□□□□□ -1.66
HMGB1P09429 AC244035.1-201ENST00000430042 390 ntBASIC4.71□□□□□ -1.66
HMGB1P09429 AC087650.1-201ENST00000431445 468 ntBASIC4.71□□□□□ -1.66
HMGB1P09429 AL139289.1-201ENST00000436713 731 ntTSL 3 BASIC4.71□□□□□ -1.66
HMGB1P09429 LINC01698-201ENST00000443636 727 ntTSL 3 BASIC4.71□□□□□ -1.66
HMGB1P09429 RPL21P89-201ENST00000444021 467 ntBASIC4.71□□□□□ -1.66
HMGB1P09429 AL731568.1-201ENST00000445111 434 ntTSL 2 BASIC4.71□□□□□ -1.66
HMGB1P09429 GDI2P2-201ENST00000445131 608 ntBASIC4.71□□□□□ -1.66
HMGB1P09429 AL392046.1-203ENST00000450106 651 ntTSL 2 BASIC4.71□□□□□ -1.66
Retrieved 100 of 98,524 protein–RNA pairs in 134.5 ms