Protein–RNA interactions for Protein: O95639

CPSF4, Cleavage and polyadenylation specificity factor subunit 4, humanhuman

Known RBP Predictions only

Length 269 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4O95639 AC011773.3-201ENST00000546501 589 ntTSL 3 BASIC2.2□□□□□ -2.06
CPSF4O95639 AL162311.1-201ENST00000553046 601 ntTSL 3 BASIC2.2□□□□□ -2.06
CPSF4O95639 AC027176.1-201ENST00000560204 514 ntBASIC2.2□□□□□ -2.06
CPSF4O95639 AC105137.2-201ENST00000569073 466 ntBASIC2.2□□□□□ -2.06
CPSF4O95639 AC090506.1-201ENST00000583089 572 ntTSL 4 BASIC2.2□□□□□ -2.06
CPSF4O95639 MTATP6P2-201ENST00000603319 678 ntBASIC2.2□□□□□ -2.06
CPSF4O95639 RPAP2P1-201ENST00000603626 1168 ntBASIC2.2□□□□□ -2.06
CPSF4O95639 AC120053.1-201ENST00000607706 736 ntBASIC2.2□□□□□ -2.06
CPSF4O95639 AC046143.2-201ENST00000609789 160 ntBASIC2.2□□□□□ -2.06
CPSF4O95639 AL390240.1-201ENST00000612950 384 ntBASIC2.2□□□□□ -2.06
CPSF4O95639 VN1R74P-201ENST00000613259 503 ntBASIC2.2□□□□□ -2.06
CPSF4O95639 AC004696.1-201ENST00000614345 607 ntBASIC2.2□□□□□ -2.06
CPSF4O95639 STATH-208ENST00000615994 598 ntAPPRIS P1 TSL 1 (best) BASIC2.2□□□□□ -2.06
CPSF4O95639 AC026523.1-201ENST00000617221 490 ntTSL 5 BASIC2.2□□□□□ -2.06
CPSF4O95639 AC007405.1-203ENST00000623667 932 ntTSL 5 BASIC2.2□□□□□ -2.06
CPSF4O95639 AL160394.1-201ENST00000624765 724 ntBASIC2.2□□□□□ -2.06
CPSF4O95639 LINC01090-203ENST00000632331 466 ntTSL 5 BASIC2.2□□□□□ -2.06
CPSF4O95639 AP003171.2-202ENST00000634657 355 ntTSL 5 BASIC2.2□□□□□ -2.06
CPSF4O95639 AC087521.4-201ENST00000637427 289 ntTSL 5 BASIC2.2□□□□□ -2.06
CPSF4O95639 C6orf10-205ENST00000527965 2076 ntAPPRIS ALT2 TSL 2 BASIC2.2□□□□□ -2.06
CPSF4O95639 AC073130.1-201ENST00000457033 1958 ntTSL 2 BASIC2.19□□□□□ -2.06
CPSF4O95639 AC130650.2-201ENST00000618736 2403 ntBASIC2.19□□□□□ -2.06
CPSF4O95639 PSG1-205ENST00000595124 1692 ntTSL 2 BASIC2.19□□□□□ -2.06
CPSF4O95639 RNU6-582P-201ENST00000362989 107 ntBASIC2.19□□□□□ -2.06
CPSF4O95639 SNORA5B-201ENST00000363786 132 ntBASIC2.19□□□□□ -2.06
CPSF4O95639 RNU6-115P-201ENST00000364310 107 ntBASIC2.19□□□□□ -2.06
CPSF4O95639 SNORA40.4-201ENST00000390971 128 ntBASIC2.19□□□□□ -2.06
CPSF4O95639 RNU6-837P-201ENST00000391056 108 ntBASIC2.19□□□□□ -2.06
CPSF4O95639 AL121978.1-201ENST00000402778 359 ntBASIC2.19□□□□□ -2.06
CPSF4O95639 SNORA11.1-201ENST00000408133 129 ntBASIC2.19□□□□□ -2.06
CPSF4O95639 AC109780.2-201ENST00000413467 845 ntBASIC2.19□□□□□ -2.06
CPSF4O95639 FCF1P2-201ENST00000415284 583 ntBASIC2.19□□□□□ -2.06
CPSF4O95639 FNDC3CP-201ENST00000420795 1155 ntBASIC2.19□□□□□ -2.06
CPSF4O95639 AL035410.1-201ENST00000427409 427 ntBASIC2.19□□□□□ -2.06
CPSF4O95639 ABCC13-201ENST00000429114 611 ntTSL 3 BASIC2.19□□□□□ -2.06
CPSF4O95639 CR769767.1-201ENST00000436337 346 ntBASIC2.19□□□□□ -2.06
CPSF4O95639 ELOCP13-201ENST00000443934 329 ntBASIC2.19□□□□□ -2.06
CPSF4O95639 MGAT4A-209ENST00000495056 683 ntTSL 2 BASIC2.19□□□□□ -2.06
CPSF4O95639 AC020703.1-201ENST00000505051 521 ntTSL 3 BASIC2.19□□□□□ -2.06
CPSF4O95639 AC093689.1-203ENST00000505967 299 ntTSL 3 BASIC2.19□□□□□ -2.06
CPSF4O95639 AC113347.4-201ENST00000506032 685 ntTSL 3 BASIC2.19□□□□□ -2.06
CPSF4O95639 AC016687.2-203ENST00000506650 578 ntTSL 3 BASIC2.19□□□□□ -2.06
CPSF4O95639 AC004053.1-201ENST00000515127 575 ntTSL 5 BASIC2.19□□□□□ -2.06
CPSF4O95639 AC022679.1-202ENST00000520251 376 ntTSL 3 BASIC2.19□□□□□ -2.06
CPSF4O95639 ZFPM2-AS1-204ENST00000520433 748 ntTSL 3 BASIC2.19□□□□□ -2.06
CPSF4O95639 AC007876.1-201ENST00000527562 983 ntTSL 1 (best) BASIC2.19□□□□□ -2.06
CPSF4O95639 MIR100HG-213ENST00000531470 560 ntTSL 4 BASIC2.19□□□□□ -2.06
CPSF4O95639 AC109635.4-202ENST00000531666 412 ntBASIC2.19□□□□□ -2.06
CPSF4O95639 AP000889.2-201ENST00000532684 490 ntBASIC2.19□□□□□ -2.06
CPSF4O95639 AL133330.2-201ENST00000532760 776 ntTSL 2 BASIC2.19□□□□□ -2.06
CPSF4O95639 AC087623.1-201ENST00000533301 377 ntTSL 3 BASIC2.19□□□□□ -2.06
CPSF4O95639 CYB5AP5-201ENST00000549779 389 ntBASIC2.19□□□□□ -2.06
CPSF4O95639 LSM6P2-201ENST00000552208 177 ntBASIC2.19□□□□□ -2.06
CPSF4O95639 AC025281.1-201ENST00000567026 265 ntBASIC2.19□□□□□ -2.06
CPSF4O95639 AL591441.2-201ENST00000620059 535 ntTSL 5 BASIC2.19□□□□□ -2.06
CPSF4O95639 MARCH6-215ENST00000640713 231 ntTSL 5 BASIC2.19□□□□□ -2.06
CPSF4O95639 ELF1-201ENST00000239882 3566 ntAPPRIS P1 TSL 1 (best) BASIC2.19□□□□□ -2.06
CPSF4O95639 AC005336.3-201ENST00000623833 2679 ntBASIC2.19□□□□□ -2.06
CPSF4O95639 OGN-201ENST00000262551 2971 ntAPPRIS P1 TSL 5 BASIC2.19□□□□□ -2.06
CPSF4O95639 SOBP-204ENST00000618129 1550 ntTSL 1 (best) BASIC2.19□□□□□ -2.06
CPSF4O95639 TRAPPC13-208ENST00000505553 1410 ntAPPRIS ALT1 TSL 1 (best) BASIC2.18□□□□□ -2.06
CPSF4O95639 PLS1-201ENST00000337777 3755 ntAPPRIS P1 TSL 1 (best) BASIC2.18□□□□□ -2.06
CPSF4O95639 HTN3-201ENST00000381057 493 ntAPPRIS ALT2 TSL 2 BASIC2.18□□□□□ -2.06
CPSF4O95639 RNU6-730P-201ENST00000383954 104 ntBASIC2.18□□□□□ -2.06
CPSF4O95639 RNU1-138P-201ENST00000384093 164 ntBASIC2.18□□□□□ -2.06
CPSF4O95639 MTND4LP20-201ENST00000402379 270 ntBASIC2.18□□□□□ -2.06
CPSF4O95639 AL355615.1-201ENST00000406187 641 ntBASIC2.18□□□□□ -2.06
CPSF4O95639 LIMS1-AS1-201ENST00000411710 477 ntTSL 3 BASIC2.18□□□□□ -2.06
CPSF4O95639 AL157709.1-201ENST00000412695 424 ntTSL 3 BASIC2.18□□□□□ -2.06
CPSF4O95639 AL355989.1-202ENST00000419406 408 ntTSL 3 BASIC2.18□□□□□ -2.06
CPSF4O95639 AC027644.1-201ENST00000419595 298 ntBASIC2.18□□□□□ -2.06
CPSF4O95639 HSPE1P1-201ENST00000421494 318 ntBASIC2.18□□□□□ -2.06
CPSF4O95639 AC005345.1-201ENST00000431868 217 ntBASIC2.18□□□□□ -2.06
CPSF4O95639 MTCYBP15-201ENST00000433123 1127 ntBASIC2.18□□□□□ -2.06
CPSF4O95639 RPS7P2-201ENST00000435134 607 ntBASIC2.18□□□□□ -2.06
CPSF4O95639 RPL17P49-201ENST00000443728 411 ntBASIC2.18□□□□□ -2.06
CPSF4O95639 snoU13.24-201ENST00000458998 104 ntBASIC2.18□□□□□ -2.06
CPSF4O95639 MTCO3P35-201ENST00000485582 781 ntBASIC2.18□□□□□ -2.06
CPSF4O95639 AC092902.1-201ENST00000486999 259 ntBASIC2.18□□□□□ -2.06
CPSF4O95639 LINC02110-201ENST00000503870 546 ntTSL 3 BASIC2.18□□□□□ -2.06
CPSF4O95639 AC093801.2-201ENST00000503966 1050 ntBASIC2.18□□□□□ -2.06
CPSF4O95639 AC098799.1-201ENST00000504752 800 ntBASIC2.18□□□□□ -2.06
CPSF4O95639 SNORA31.1-201ENST00000515993 133 ntBASIC2.18□□□□□ -2.06
CPSF4O95639 SNORA31.5-201ENST00000516190 133 ntBASIC2.18□□□□□ -2.06
CPSF4O95639 RNU4ATAC10P-201ENST00000516967 122 ntBASIC2.18□□□□□ -2.06
CPSF4O95639 RNA5SP135-201ENST00000517019 125 ntBASIC2.18□□□□□ -2.06
CPSF4O95639 RNU6-467P-201ENST00000517027 110 ntBASIC2.18□□□□□ -2.06
CPSF4O95639 RNU6-711P-201ENST00000517255 106 ntBASIC2.18□□□□□ -2.06
CPSF4O95639 NCRNA00250-201ENST00000519500 519 ntTSL 4 BASIC2.18□□□□□ -2.06
CPSF4O95639 LINC02267-202ENST00000522173 799 ntTSL 3 BASIC2.18□□□□□ -2.06
CPSF4O95639 AC092451.2-201ENST00000538746 658 ntBASIC2.18□□□□□ -2.06
CPSF4O95639 ERP27-202ENST00000540097 993 ntTSL 2 BASIC2.18□□□□□ -2.06
CPSF4O95639 GAS5-AS1-201ENST00000602767 694 ntBASIC2.18□□□□□ -2.06
CPSF4O95639 AC012594.1-272ENST00000625790 710 ntTSL 5 BASIC2.18□□□□□ -2.06
CPSF4O95639 SLC27A2-203ENST00000544960 2025 ntTSL 2 BASIC2.18□□□□□ -2.06
CPSF4O95639 SLC4A7-201ENST00000295736 7757 ntAPPRIS P3 TSL 1 (best) BASIC2.17□□□□□ -2.06
CPSF4O95639 NETO1-202ENST00000397929 1849 ntTSL 1 (best) BASIC2.17□□□□□ -2.06
CPSF4O95639 LRRC49-224ENST00000560691 2531 ntTSL 2 BASIC2.17□□□□□ -2.06
CPSF4O95639 RNA5SP258-201ENST00000362750 119 ntBASIC2.17□□□□□ -2.06
CPSF4O95639 RNU6-839P-201ENST00000363347 108 ntBASIC2.17□□□□□ -2.06
Retrieved 100 of 98,524 protein–RNA pairs in 145.8 ms