Protein–RNA interactions for Protein: O75056

SDC3, Syndecan-3, humanhuman

Predictions only

Length 442 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3O75056 AL137014.1-201ENST00000420490 1226 ntBASIC3.14□□□□□ -1.91
SDC3O75056 GRK5-IT1-201ENST00000421206 400 ntTSL 3 BASIC3.14□□□□□ -1.91
SDC3O75056 AC017074.1-201ENST00000424612 561 ntTSL 3 BASIC3.14□□□□□ -1.91
SDC3O75056 AL353705.1-201ENST00000433468 480 ntBASIC3.14□□□□□ -1.91
SDC3O75056 SNRPEP4-201ENST00000435815 279 ntBASIC3.14□□□□□ -1.91
SDC3O75056 MTND4P6-201ENST00000438297 472 ntBASIC3.14□□□□□ -1.91
SDC3O75056 AL513412.1-201ENST00000445708 553 ntTSL 4 BASIC3.14□□□□□ -1.91
SDC3O75056 AL606517.1-201ENST00000446914 387 ntBASIC3.14□□□□□ -1.91
SDC3O75056 AC140076.1-201ENST00000449897 361 ntBASIC3.14□□□□□ -1.91
SDC3O75056 BCL2L15-204ENST00000471267 267 ntTSL 1 (best) BASIC3.14□□□□□ -1.91
SDC3O75056 HMGN2P13-201ENST00000476476 274 ntBASIC3.14□□□□□ -1.91
SDC3O75056 LINC02032-201ENST00000490465 391 ntTSL 2 BASIC3.14□□□□□ -1.91
SDC3O75056 AC108752.1-203ENST00000496674 339 ntTSL 5 BASIC3.14□□□□□ -1.91
SDC3O75056 CBX3P3-201ENST00000508108 532 ntBASIC3.14□□□□□ -1.91
SDC3O75056 AC008885.1-201ENST00000514930 301 ntBASIC3.14□□□□□ -1.91
SDC3O75056 AC009812.2-201ENST00000517657 457 ntBASIC3.14□□□□□ -1.91
SDC3O75056 AP002768.1-201ENST00000526741 320 ntTSL 3 BASIC3.14□□□□□ -1.91
SDC3O75056 AC022240.1-201ENST00000532065 684 ntTSL 1 (best) BASIC3.14□□□□□ -1.91
SDC3O75056 AC009511.1-201ENST00000543527 191 ntTSL 5 BASIC3.14□□□□□ -1.91
SDC3O75056 GLIPR1L1-204ENST00000548623 484 ntTSL 3 BASIC3.14□□□□□ -1.91
SDC3O75056 AC012100.2-201ENST00000558317 304 ntTSL 5 BASIC3.14□□□□□ -1.91
SDC3O75056 AC004943.1-202ENST00000558618 503 ntTSL 3 BASIC3.14□□□□□ -1.91
SDC3O75056 AC018554.1-201ENST00000565506 800 ntTSL 2 BASIC3.14□□□□□ -1.91
SDC3O75056 LINC02164-201ENST00000566684 272 ntTSL 3 BASIC3.14□□□□□ -1.91
SDC3O75056 MIR2682-201ENST00000580305 110 ntBASIC3.14□□□□□ -1.91
SDC3O75056 AC118755.2-201ENST00000584676 212 ntTSL 3 BASIC3.14□□□□□ -1.91
SDC3O75056 AP005380.1-201ENST00000584896 547 ntTSL 4 BASIC3.14□□□□□ -1.91
SDC3O75056 SATB1-AS1-207ENST00000593741 955 ntTSL 5 BASIC3.14□□□□□ -1.91
SDC3O75056 DUXAP3-201ENST00000603616 594 ntBASIC3.14□□□□□ -1.91
SDC3O75056 AC009974.1-201ENST00000608881 455 ntBASIC3.14□□□□□ -1.91
SDC3O75056 AC027449.1-201ENST00000608890 407 ntBASIC3.14□□□□□ -1.91
SDC3O75056 AC100793.4-201ENST00000613683 429 ntBASIC3.14□□□□□ -1.91
SDC3O75056 AC025588.4-201ENST00000615802 908 ntBASIC3.14□□□□□ -1.91
SDC3O75056 AL353748.2-201ENST00000622148 471 ntBASIC3.14□□□□□ -1.91
SDC3O75056 AL356585.4-201ENST00000623078 1229 ntBASIC3.14□□□□□ -1.91
SDC3O75056 AL078595.3-201ENST00000623815 1166 ntBASIC3.14□□□□□ -1.91
SDC3O75056 AC092813.1-201ENST00000635455 969 ntTSL 5 BASIC3.14□□□□□ -1.91
SDC3O75056 AC011124.1-201ENST00000521221 1762 ntTSL 2 BASIC3.14□□□□□ -1.91
SDC3O75056 AL390862.1-201ENST00000635467 1469 ntBASIC3.14□□□□□ -1.91
SDC3O75056 SAGE1-203ENST00000537770 1824 ntAPPRIS ALT2 TSL 5 BASIC3.14□□□□□ -1.91
SDC3O75056 CADM2-AS1-201ENST00000476021 2656 ntTSL 1 (best) BASIC3.14□□□□□ -1.91
SDC3O75056 NBEAL1-203ENST00000449802 10938 ntAPPRIS P1 TSL 5 BASIC3.14□□□□□ -1.91
SDC3O75056 RASA1-202ENST00000456692 3776 ntAPPRIS ALT2 TSL 1 (best) BASIC3.13□□□□□ -1.91
SDC3O75056 OR6C1-202ENST00000642104 2055 ntAPPRIS P1 BASIC3.13□□□□□ -1.91
SDC3O75056 AL079343.1-201ENST00000572358 1771 ntBASIC3.13□□□□□ -1.91
SDC3O75056 AP002907.1-201ENST00000606361 1430 ntBASIC3.13□□□□□ -1.91
SDC3O75056 AC097714.1-201ENST00000511272 1647 ntBASIC3.13□□□□□ -1.91
SDC3O75056 KCNE2-201ENST00000290310 1051 ntAPPRIS P1 TSL 1 (best) BASIC3.13□□□□□ -1.91
SDC3O75056 OR5T2-201ENST00000313264 1248 ntAPPRIS P2 BASIC3.13□□□□□ -1.91
SDC3O75056 CUBN-201ENST00000377823 705 ntTSL 3 BASIC3.13□□□□□ -1.91
SDC3O75056 RNU6-1242P-201ENST00000391052 103 ntBASIC3.13□□□□□ -1.91
SDC3O75056 RNU2-47P-201ENST00000410649 186 ntBASIC3.13□□□□□ -1.91
SDC3O75056 ELOCP9-201ENST00000418624 239 ntBASIC3.13□□□□□ -1.91
SDC3O75056 RPL21P32-201ENST00000419877 477 ntBASIC3.13□□□□□ -1.91
SDC3O75056 MTND2P9-201ENST00000422293 931 ntBASIC3.13□□□□□ -1.91
SDC3O75056 LINC00387-201ENST00000422609 458 ntTSL 5 BASIC3.13□□□□□ -1.91
SDC3O75056 AC019178.2-201ENST00000423595 505 ntBASIC3.13□□□□□ -1.91
SDC3O75056 BBS9-205ENST00000425508 1252 ntTSL 1 (best) BASIC3.13□□□□□ -1.91
SDC3O75056 OR5H14-201ENST00000437310 1080 ntAPPRIS P1 BASIC3.13□□□□□ -1.91
SDC3O75056 MUPP-201ENST00000438111 566 ntBASIC3.13□□□□□ -1.91
SDC3O75056 AL050303.1-201ENST00000444356 458 ntTSL 2 BASIC3.13□□□□□ -1.91
SDC3O75056 AC092162.2-204ENST00000451851 566 ntTSL 4 BASIC3.13□□□□□ -1.91
SDC3O75056 RPL21P134-201ENST00000453468 483 ntBASIC3.13□□□□□ -1.91
SDC3O75056 Z82190.1-201ENST00000454534 490 ntBASIC3.13□□□□□ -1.91
SDC3O75056 TBL1XR1-AS1-201ENST00000454723 414 ntTSL 5 BASIC3.13□□□□□ -1.91
SDC3O75056 AC092059.1-201ENST00000485347 429 ntTSL 3 BASIC3.13□□□□□ -1.91
SDC3O75056 SATB1-216ENST00000491519 1000 ntTSL 2 BASIC3.13□□□□□ -1.91
SDC3O75056 TMEM251P1-201ENST00000503717 318 ntBASIC3.13□□□□□ -1.91
SDC3O75056 COX7A2P2-201ENST00000505291 250 ntBASIC3.13□□□□□ -1.91
SDC3O75056 AC104803.1-201ENST00000506917 529 ntTSL 3 BASIC3.13□□□□□ -1.91
SDC3O75056 AC093730.1-201ENST00000508825 448 ntTSL 3 BASIC3.13□□□□□ -1.91
SDC3O75056 AC109445.1-201ENST00000512356 383 ntBASIC3.13□□□□□ -1.91
SDC3O75056 AC006499.2-201ENST00000513470 337 ntBASIC3.13□□□□□ -1.91
SDC3O75056 AC139720.2-201ENST00000514766 440 ntTSL 2 BASIC3.13□□□□□ -1.91
SDC3O75056 LRRTM2-203ENST00000521094 1182 ntTSL 1 (best) BASIC3.13□□□□□ -1.91
SDC3O75056 AC015771.1-201ENST00000527283 554 ntTSL 4 BASIC3.13□□□□□ -1.91
SDC3O75056 AP002404.1-201ENST00000532005 451 ntBASIC3.13□□□□□ -1.91
SDC3O75056 OR4T1P-201ENST00000554933 911 ntBASIC3.13□□□□□ -1.91
SDC3O75056 EGLN3-AS1-201ENST00000555922 308 ntTSL 3 BASIC3.13□□□□□ -1.91
SDC3O75056 MIR4298-201ENST00000584380 73 ntBASIC3.13□□□□□ -1.91
SDC3O75056 LINC01515-204ENST00000595269 402 ntTSL 5 BASIC3.13□□□□□ -1.91
SDC3O75056 IGKV1OR2-6-201ENST00000603485 277 ntBASIC3.13□□□□□ -1.91
SDC3O75056 PRELID3BP8-201ENST00000604148 295 ntBASIC3.13□□□□□ -1.91
SDC3O75056 AL022099.1-201ENST00000604551 712 ntBASIC3.13□□□□□ -1.91
SDC3O75056 AL031176.1-201ENST00000604554 466 ntBASIC3.13□□□□□ -1.91
SDC3O75056 HNRNPDLP4-201ENST00000605144 301 ntBASIC3.13□□□□□ -1.91
SDC3O75056 AC107294.3-201ENST00000609211 526 ntBASIC3.13□□□□□ -1.91
SDC3O75056 SNORD39.4-201ENST00000620099 78 ntBASIC3.13□□□□□ -1.91
SDC3O75056 AC091046.2-201ENST00000620775 665 ntBASIC3.13□□□□□ -1.91
SDC3O75056 AC004009.2-201ENST00000623016 728 ntBASIC3.13□□□□□ -1.91
SDC3O75056 FP475955.2-201ENST00000623720 458 ntTSL 2 BASIC3.13□□□□□ -1.91
SDC3O75056 VPS13C-203ENST00000395896 14579 ntAPPRIS ALT2 TSL 1 (best) BASIC3.13□□□□□ -1.91
SDC3O75056 USP15-203ENST00000353364 14950 ntAPPRIS P3 TSL 1 (best) BASIC3.13□□□□□ -1.91
SDC3O75056 SLC27A2-203ENST00000544960 2025 ntTSL 2 BASIC3.13□□□□□ -1.91
SDC3O75056 PAPPA-AS1-201ENST00000445861 2450 ntBASIC3.13□□□□□ -1.91
SDC3O75056 RXFP1-201ENST00000307765 3842 ntAPPRIS P1 TSL 1 (best) BASIC3.13□□□□□ -1.91
SDC3O75056 WDFY3-AS2-202ENST00000451762 5814 ntTSL 3 BASIC3.13□□□□□ -1.91
SDC3O75056 PHF3-202ENST00000393387 6947 ntAPPRIS P1 TSL 1 (best) BASIC3.12□□□□□ -1.91
SDC3O75056 AC093725.1-201ENST00000508135 2672 ntTSL 5 BASIC3.12□□□□□ -1.91
SDC3O75056 RNU6-7-201ENST00000364784 107 ntBASIC3.12□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 103.6 ms