Protein–RNA interactions for Protein: O00257

CBX4, E3 SUMO-protein ligase CBX4, humanhuman

Predictions only

Length 560 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4O00257 AL355076.2-202ENST00000553754 574 ntTSL 4 BASIC4.63□□□□□ -1.67
CBX4O00257 NCAPGP2-201ENST00000557911 754 ntBASIC4.63□□□□□ -1.67
CBX4O00257 AC022523.3-201ENST00000559643 410 ntTSL 3 BASIC4.63□□□□□ -1.67
CBX4O00257 AC068397.1-201ENST00000560337 531 ntTSL 2 BASIC4.63□□□□□ -1.67
CBX4O00257 LINC01290-201ENST00000566787 502 ntTSL 2 BASIC4.63□□□□□ -1.67
CBX4O00257 AC020978.4-201ENST00000569088 460 ntTSL 3 BASIC4.63□□□□□ -1.67
CBX4O00257 MSMB-201ENST00000581478 386 ntTSL 1 (best) BASIC4.63□□□□□ -1.67
CBX4O00257 FGF7P1-201ENST00000582820 288 ntBASIC4.63□□□□□ -1.67
CBX4O00257 AC010928.1-202ENST00000589354 473 ntTSL 3 BASIC4.63□□□□□ -1.67
CBX4O00257 AC008945.2-201ENST00000606056 604 ntBASIC4.63□□□□□ -1.67
CBX4O00257 MIR4275-201ENST00000636486 87 ntBASIC4.63□□□□□ -1.67
CBX4O00257 FTO-223ENST00000640179 210 ntTSL 5 BASIC4.63□□□□□ -1.67
CBX4O00257 MTND5P17-201ENST00000418405 1603 ntBASIC4.63□□□□□ -1.67
CBX4O00257 SLC5A12-202ENST00000396005 6250 ntAPPRIS P1 TSL 1 (best) BASIC4.63□□□□□ -1.67
CBX4O00257 EYA4-202ENST00000355286 4317 ntAPPRIS ALT1 TSL 1 (best) BASIC4.63□□□□□ -1.67
CBX4O00257 SPOCK3-225ENST00000535728 2007 ntAPPRIS ALT2 TSL 5 BASIC4.63□□□□□ -1.67
CBX4O00257 DSG2-AS1-202ENST00000583706 2024 ntTSL 5 BASIC4.63□□□□□ -1.67
CBX4O00257 GABPAP-201ENST00000419271 1356 ntBASIC4.63□□□□□ -1.67
CBX4O00257 AC090337.1-201ENST00000579651 2074 ntBASIC4.63□□□□□ -1.67
CBX4O00257 STEAP2-203ENST00000394622 6612 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
CBX4O00257 ADGRL3-202ENST00000504896 4816 ntTSL 5 BASIC4.62□□□□□ -1.67
CBX4O00257 XPO4-201ENST00000255305 9921 ntAPPRIS P2 TSL 1 (best) BASIC4.62□□□□□ -1.67
CBX4O00257 MLH3-212ENST00000556740 4491 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
CBX4O00257 OR56B2P-202ENST00000641377 2453 ntBASIC4.62□□□□□ -1.67
CBX4O00257 NAMPT-202ENST00000354289 1213 ntTSL 1 (best) BASIC4.62□□□□□ -1.67
CBX4O00257 RNU4-44P-201ENST00000363050 141 ntBASIC4.62□□□□□ -1.67
CBX4O00257 SNORD3H-201ENST00000384486 214 ntBASIC4.62□□□□□ -1.67
CBX4O00257 CTNNA2-204ENST00000409266 432 ntTSL 3 BASIC4.62□□□□□ -1.67
CBX4O00257 RNU2-41P-201ENST00000410991 178 ntBASIC4.62□□□□□ -1.67
CBX4O00257 AF124730.1-201ENST00000430001 327 ntTSL 2 BASIC4.62□□□□□ -1.67
CBX4O00257 AL138759.1-201ENST00000432120 645 ntTSL 2 BASIC4.62□□□□□ -1.67
CBX4O00257 LINC00411-201ENST00000436722 461 ntTSL 3 BASIC4.62□□□□□ -1.67
CBX4O00257 AC004866.2-201ENST00000438285 481 ntBASIC4.62□□□□□ -1.67
CBX4O00257 AP000936.1-201ENST00000442124 483 ntTSL 5 BASIC4.62□□□□□ -1.67
CBX4O00257 MTCO3P45-201ENST00000443036 613 ntBASIC4.62□□□□□ -1.67
CBX4O00257 AL031584.1-201ENST00000447169 754 ntBASIC4.62□□□□□ -1.67
CBX4O00257 LINC01150-201ENST00000455671 315 ntTSL 1 (best) BASIC4.62□□□□□ -1.67
CBX4O00257 AC091153.1-201ENST00000466297 402 ntBASIC4.62□□□□□ -1.67
CBX4O00257 PLCH1-AS2-201ENST00000472913 408 ntTSL 2 BASIC4.62□□□□□ -1.67
CBX4O00257 NIPA2P2-201ENST00000496376 1083 ntBASIC4.62□□□□□ -1.67
CBX4O00257 AC091951.2-201ENST00000500762 203 ntBASIC4.62□□□□□ -1.67
CBX4O00257 NREP-AS1-201ENST00000503242 411 ntTSL 3 BASIC4.62□□□□□ -1.67
CBX4O00257 RNU6-875P-201ENST00000516488 106 ntBASIC4.62□□□□□ -1.67
CBX4O00257 NDST1-AS1-201ENST00000519040 368 ntTSL 2 BASIC4.62□□□□□ -1.67
CBX4O00257 AC018630.1-201ENST00000541376 925 ntBASIC4.62□□□□□ -1.67
CBX4O00257 CLEC2D-214ENST00000543300 399 ntTSL 1 (best) BASIC4.62□□□□□ -1.67
CBX4O00257 CLEC2D-216ENST00000545918 288 ntTSL 1 (best) BASIC4.62□□□□□ -1.67
CBX4O00257 AL121603.1-201ENST00000553815 142 ntBASIC4.62□□□□□ -1.67
CBX4O00257 AC007342.4-202ENST00000565189 721 ntTSL 3 BASIC4.62□□□□□ -1.67
CBX4O00257 FOPNL-205ENST00000573429 646 ntTSL 3 BASIC4.62□□□□□ -1.67
CBX4O00257 AC012313.1-202ENST00000597309 423 ntTSL 3 BASIC4.62□□□□□ -1.67
CBX4O00257 AC093648.1-201ENST00000623546 606 ntBASIC4.62□□□□□ -1.67
CBX4O00257 BMS1P21-201ENST00000634565 365 ntBASIC4.62□□□□□ -1.67
CBX4O00257 U6.114-201ENST00000636407 96 ntBASIC4.62□□□□□ -1.67
CBX4O00257 RIMS1-204ENST00000401910 3542 ntTSL 2 BASIC4.62□□□□□ -1.67
CBX4O00257 AL356489.2-201ENST00000566968 3528 ntBASIC4.62□□□□□ -1.67
CBX4O00257 ATP2C1-212ENST00000507488 3579 ntAPPRIS ALT2 TSL 2 BASIC4.62□□□□□ -1.67
CBX4O00257 LINC01355-201ENST00000566551 5444 ntBASIC4.62□□□□□ -1.67
CBX4O00257 NAIP-210ENST00000523981 4543 ntTSL 1 (best) BASIC4.62□□□□□ -1.67
CBX4O00257 UTP20-201ENST00000261637 9025 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
CBX4O00257 AL360270.1-201ENST00000440689 2359 ntTSL 2 BASIC4.62□□□□□ -1.67
CBX4O00257 AC009975.2-201ENST00000635306 1429 ntTSL 5 BASIC4.62□□□□□ -1.67
CBX4O00257 EMSY-207ENST00000525919 4074 ntAPPRIS ALT1 TSL 1 (best) BASIC4.62□□□□□ -1.67
CBX4O00257 AC116667.1-201ENST00000604855 2072 ntBASIC4.61□□□□□ -1.67
CBX4O00257 HMBOX1-202ENST00000355231 1694 ntTSL 5 BASIC4.61□□□□□ -1.67
CBX4O00257 NRK-204ENST00000540278 1687 ntTSL 2 BASIC4.61□□□□□ -1.67
CBX4O00257 NUP205-201ENST00000285968 6266 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
CBX4O00257 SPINK5-201ENST00000256084 3535 ntAPPRIS P3 TSL 1 (best) BASIC4.61□□□□□ -1.67
CBX4O00257 ACE2-202ENST00000427411 3507 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
CBX4O00257 PTRH2-203ENST00000470557 4114 ntAPPRIS P3 BASIC4.61□□□□□ -1.67
CBX4O00257 RNU6-179P-201ENST00000363350 107 ntBASIC4.61□□□□□ -1.67
CBX4O00257 SNORA62.1-201ENST00000364287 154 ntBASIC4.61□□□□□ -1.67
CBX4O00257 Y_RNA.279-201ENST00000364763 95 ntBASIC4.61□□□□□ -1.67
CBX4O00257 AC245054.1-201ENST00000420944 258 ntBASIC4.61□□□□□ -1.67
CBX4O00257 TTTY21B-201ENST00000421353 307 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
CBX4O00257 Z74021.1-201ENST00000423610 407 ntBASIC4.61□□□□□ -1.67
CBX4O00257 TTTY21-201ENST00000430228 307 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
CBX4O00257 MTND1P11-201ENST00000456661 876 ntBASIC4.61□□□□□ -1.67
CBX4O00257 MRPS17P3-201ENST00000465453 385 ntBASIC4.61□□□□□ -1.67
CBX4O00257 NIP7P2-201ENST00000485801 544 ntBASIC4.61□□□□□ -1.67
CBX4O00257 AC139783.2-201ENST00000504847 1145 ntBASIC4.61□□□□□ -1.67
CBX4O00257 AC105914.2-201ENST00000507525 233 ntTSL 3 BASIC4.61□□□□□ -1.67
CBX4O00257 LINC00491-204ENST00000513815 582 ntTSL 4 BASIC4.61□□□□□ -1.67
CBX4O00257 RNU6-1092P-201ENST00000516955 87 ntBASIC4.61□□□□□ -1.67
CBX4O00257 IGLVIV-65-201ENST00000517313 360 ntBASIC4.61□□□□□ -1.67
CBX4O00257 AC009597.1-201ENST00000521215 584 ntTSL 4 BASIC4.61□□□□□ -1.67
CBX4O00257 AC125611.2-201ENST00000551907 647 ntBASIC4.61□□□□□ -1.67
CBX4O00257 AC090985.1-201ENST00000554440 480 ntTSL 2 BASIC4.61□□□□□ -1.67
CBX4O00257 NUDT7-203ENST00000563839 316 ntTSL 3 BASIC4.61□□□□□ -1.67
CBX4O00257 AC026470.3-201ENST00000563994 438 ntTSL 3 BASIC4.61□□□□□ -1.67
CBX4O00257 AC091178.1-203ENST00000584586 279 ntBASIC4.61□□□□□ -1.67
CBX4O00257 AF038458.1-201ENST00000588406 262 ntBASIC4.61□□□□□ -1.67
CBX4O00257 AC011712.1-201ENST00000588959 234 ntBASIC4.61□□□□□ -1.67
CBX4O00257 AL670379.6-201ENST00000603753 252 ntBASIC4.61□□□□□ -1.67
CBX4O00257 AL670379.11-201ENST00000604059 253 ntBASIC4.61□□□□□ -1.67
CBX4O00257 AC008162.1-201ENST00000604718 254 ntBASIC4.61□□□□□ -1.67
CBX4O00257 AL670379.1-201ENST00000604752 252 ntBASIC4.61□□□□□ -1.67
CBX4O00257 AL670379.5-201ENST00000605253 252 ntBASIC4.61□□□□□ -1.67
CBX4O00257 AL670379.12-201ENST00000605291 253 ntBASIC4.61□□□□□ -1.67
CBX4O00257 AL670379.8-201ENST00000605353 252 ntBASIC4.61□□□□□ -1.67
Retrieved 100 of 98,524 protein–RNA pairs in 88.5 ms