Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 ZSCAN26-201ENST00000316606 2362 ntTSL 1 (best) BASIC6.2□□□□□ -1.42
VPS9D1Q9Y2B5 ZC3H12C-201ENST00000278590 8807 ntTSL 2 BASIC6.2□□□□□ -1.42
VPS9D1Q9Y2B5 F13B-201ENST00000367412 2217 ntAPPRIS P1 TSL 1 (best) BASIC6.19□□□□□ -1.42
VPS9D1Q9Y2B5 AC000374.1-201ENST00000434698 1745 ntBASIC6.19□□□□□ -1.42
VPS9D1Q9Y2B5 FAR2-201ENST00000182377 2095 ntAPPRIS P1 TSL 1 (best) BASIC6.19□□□□□ -1.42
VPS9D1Q9Y2B5 AC024651.2-201ENST00000562480 2098 ntBASIC6.19□□□□□ -1.42
VPS9D1Q9Y2B5 DNHD1-201ENST00000254579 14862 ntAPPRIS P1 TSL 5 BASIC6.19□□□□□ -1.42
VPS9D1Q9Y2B5 SYCP2L-207ENST00000543878 2436 ntAPPRIS ALT2 TSL 5 BASIC6.19□□□□□ -1.42
VPS9D1Q9Y2B5 LNPK-212ENST00000544803 7647 ntTSL 1 (best) BASIC6.19□□□□□ -1.42
VPS9D1Q9Y2B5 OR2AT4-202ENST00000641504 8661 ntAPPRIS P1 BASIC6.19□□□□□ -1.42
VPS9D1Q9Y2B5 SLC16A4-201ENST00000369779 2632 ntAPPRIS P1 TSL 1 (best) BASIC6.19□□□□□ -1.42
VPS9D1Q9Y2B5 POLE2-206ENST00000554396 1581 ntTSL 1 (best) BASIC6.19□□□□□ -1.42
VPS9D1Q9Y2B5 CRNDE-212ENST00000613942 2601 ntTSL 5 BASIC6.19□□□□□ -1.42
VPS9D1Q9Y2B5 SEC22A-201ENST00000309934 4228 ntAPPRIS P1 TSL 1 (best) BASIC6.19□□□□□ -1.42
VPS9D1Q9Y2B5 YWHAZ-201ENST00000353245 2829 ntAPPRIS P1 TSL 1 (best) BASIC6.19□□□□□ -1.42
VPS9D1Q9Y2B5 SLC1A2-203ENST00000395753 11689 ntAPPRIS ALT1 TSL 2 BASIC6.19□□□□□ -1.42
VPS9D1Q9Y2B5 SETDB2-205ENST00000611815 5313 ntAPPRIS ALT2 TSL 5 BASIC6.19□□□□□ -1.42
VPS9D1Q9Y2B5 ANO4-202ENST00000392979 3909 ntAPPRIS P3 TSL 2 BASIC6.19□□□□□ -1.42
VPS9D1Q9Y2B5 SEMA3A-201ENST00000265362 8225 ntAPPRIS P1 TSL 1 (best) BASIC6.19□□□□□ -1.42
VPS9D1Q9Y2B5 PROS2P-201ENST00000474651 1951 ntBASIC6.19□□□□□ -1.42
VPS9D1Q9Y2B5 AC009404.1-201ENST00000420330 3090 ntTSL 3 BASIC6.19□□□□□ -1.42
VPS9D1Q9Y2B5 AC027228.2-201ENST00000567141 2154 ntBASIC6.19□□□□□ -1.42
VPS9D1Q9Y2B5 RNU6-222P-201ENST00000362438 107 ntBASIC6.19□□□□□ -1.42
VPS9D1Q9Y2B5 RNU6-37P-201ENST00000362692 107 ntBASIC6.19□□□□□ -1.42
VPS9D1Q9Y2B5 RNA5SP391-201ENST00000363456 119 ntBASIC6.19□□□□□ -1.42
VPS9D1Q9Y2B5 RNU6-11P-201ENST00000364234 107 ntBASIC6.19□□□□□ -1.42
VPS9D1Q9Y2B5 RNU6-7-201ENST00000364784 107 ntBASIC6.19□□□□□ -1.42
VPS9D1Q9Y2B5 RNU6-8-201ENST00000365467 107 ntBASIC6.19□□□□□ -1.42
VPS9D1Q9Y2B5 Y_RNA.369-201ENST00000365568 117 ntBASIC6.19□□□□□ -1.42
VPS9D1Q9Y2B5 RNU6-25P-201ENST00000383873 107 ntBASIC6.19□□□□□ -1.42
VPS9D1Q9Y2B5 RNU6-1-201ENST00000383898 107 ntBASIC6.19□□□□□ -1.42
VPS9D1Q9Y2B5 RNU6-36P-201ENST00000384172 107 ntBASIC6.19□□□□□ -1.42
VPS9D1Q9Y2B5 RNU6-4P-201ENST00000384205 107 ntBASIC6.19□□□□□ -1.42
VPS9D1Q9Y2B5 RNU6-5P-201ENST00000384238 107 ntBASIC6.19□□□□□ -1.42
VPS9D1Q9Y2B5 RNU6-3P-201ENST00000384314 107 ntBASIC6.19□□□□□ -1.42
VPS9D1Q9Y2B5 RNU6-16P-201ENST00000384385 107 ntBASIC6.19□□□□□ -1.42
VPS9D1Q9Y2B5 RNU6-15P-201ENST00000384534 107 ntBASIC6.19□□□□□ -1.42
VPS9D1Q9Y2B5 RNU6-2-201ENST00000384627 107 ntBASIC6.19□□□□□ -1.42
VPS9D1Q9Y2B5 RNU6-29P-201ENST00000384637 107 ntBASIC6.19□□□□□ -1.42
VPS9D1Q9Y2B5 RNU6-9-201ENST00000384776 107 ntBASIC6.19□□□□□ -1.42
VPS9D1Q9Y2B5 TBCAP2-201ENST00000416175 326 ntBASIC6.19□□□□□ -1.42
VPS9D1Q9Y2B5 LINC01058-201ENST00000420694 448 ntTSL 5 BASIC6.19□□□□□ -1.42
VPS9D1Q9Y2B5 Z82198.3-201ENST00000421145 199 ntBASIC6.19□□□□□ -1.42
VPS9D1Q9Y2B5 MAGEA8-AS1-201ENST00000427671 476 ntTSL 3 BASIC6.19□□□□□ -1.42
VPS9D1Q9Y2B5 AL136084.2-202ENST00000433997 353 ntTSL 2 BASIC6.19□□□□□ -1.42
VPS9D1Q9Y2B5 AL163193.1-201ENST00000444895 788 ntBASIC6.19□□□□□ -1.42
VPS9D1Q9Y2B5 COX4I1P2-201ENST00000447446 547 ntBASIC6.19□□□□□ -1.42
VPS9D1Q9Y2B5 AC034195.1-202ENST00000451031 610 ntTSL 3 BASIC6.19□□□□□ -1.42
VPS9D1Q9Y2B5 AC083795.1-201ENST00000491760 320 ntBASIC6.19□□□□□ -1.42
VPS9D1Q9Y2B5 SNORA31.3-201ENST00000516029 96 ntBASIC6.19□□□□□ -1.42
VPS9D1Q9Y2B5 RNU1-86P-201ENST00000516108 154 ntBASIC6.19□□□□□ -1.42
VPS9D1Q9Y2B5 RNA5SP76-201ENST00000516277 87 ntBASIC6.19□□□□□ -1.42
VPS9D1Q9Y2B5 MIR892C-201ENST00000516410 77 ntBASIC6.19□□□□□ -1.42
VPS9D1Q9Y2B5 RNU1-107P-201ENST00000516617 154 ntBASIC6.19□□□□□ -1.42
VPS9D1Q9Y2B5 AC007494.1-201ENST00000562293 760 ntBASIC6.19□□□□□ -1.42
VPS9D1Q9Y2B5 AC009145.2-201ENST00000562685 377 ntTSL 3 BASIC6.19□□□□□ -1.42
VPS9D1Q9Y2B5 AC027229.1-201ENST00000583887 253 ntBASIC6.19□□□□□ -1.42
VPS9D1Q9Y2B5 DNAJC19P2-201ENST00000593340 302 ntBASIC6.19□□□□□ -1.42
VPS9D1Q9Y2B5 IGKV2OR2-1-201ENST00000605129 304 ntBASIC6.19□□□□□ -1.42
VPS9D1Q9Y2B5 RNU6-6P-201ENST00000606623 107 ntBASIC6.19□□□□□ -1.42
VPS9D1Q9Y2B5 AC006001.4-201ENST00000622243 395 ntBASIC6.19□□□□□ -1.42
VPS9D1Q9Y2B5 SCRN1-210ENST00000631335 423 ntTSL 5 BASIC6.19□□□□□ -1.42
VPS9D1Q9Y2B5 AL589740.1-204ENST00000634677 630 ntTSL 4 BASIC6.19□□□□□ -1.42
VPS9D1Q9Y2B5 SEL1L2-202ENST00000378072 1892 ntTSL 2 BASIC6.19□□□□□ -1.42
VPS9D1Q9Y2B5 USP16-201ENST00000334352 3004 ntAPPRIS P3 TSL 5 BASIC6.19□□□□□ -1.42
VPS9D1Q9Y2B5 LINC01249-201ENST00000412134 2663 ntTSL 1 (best) BASIC6.19□□□□□ -1.42
VPS9D1Q9Y2B5 ECT2-216ENST00000540509 4406 ntAPPRIS P2 TSL 5 BASIC6.19□□□□□ -1.42
VPS9D1Q9Y2B5 SETD2-202ENST00000409792 8142 ntAPPRIS P1 TSL 5 BASIC6.19□□□□□ -1.42
VPS9D1Q9Y2B5 SPAG5-AS1-202ENST00000424210 1551 ntTSL 2 BASIC6.18□□□□□ -1.42
VPS9D1Q9Y2B5 DSC3-201ENST00000360428 6939 ntAPPRIS P1 TSL 1 (best) BASIC6.18□□□□□ -1.42
VPS9D1Q9Y2B5 HSD17B4-202ENST00000414835 2551 ntTSL 2 BASIC6.18□□□□□ -1.42
VPS9D1Q9Y2B5 LINC01619-207ENST00000551843 2205 ntTSL 1 (best) BASIC6.18□□□□□ -1.42
VPS9D1Q9Y2B5 ORC4-214ENST00000535373 6710 ntAPPRIS P1 TSL 5 BASIC6.18□□□□□ -1.42
VPS9D1Q9Y2B5 AC007159.1-201ENST00000566529 4706 ntBASIC6.18□□□□□ -1.42
VPS9D1Q9Y2B5 MCM10-202ENST00000378714 4547 ntAPPRIS ALT2 TSL 1 (best) BASIC6.18□□□□□ -1.42
VPS9D1Q9Y2B5 LARP7-210ENST00000509061 2332 ntTSL 1 (best) BASIC6.18□□□□□ -1.42
VPS9D1Q9Y2B5 AF127577.4-201ENST00000432230 5929 ntTSL 5 BASIC6.18□□□□□ -1.42
VPS9D1Q9Y2B5 OR56A3-201ENST00000329564 948 ntAPPRIS P1 BASIC6.18□□□□□ -1.42
VPS9D1Q9Y2B5 RNU1-49P-201ENST00000363468 159 ntBASIC6.18□□□□□ -1.42
VPS9D1Q9Y2B5 RNU6-879P-201ENST00000364328 108 ntBASIC6.18□□□□□ -1.42
VPS9D1Q9Y2B5 SNORA43.1-201ENST00000364863 140 ntBASIC6.18□□□□□ -1.42
VPS9D1Q9Y2B5 RNU6-275P-201ENST00000364910 107 ntBASIC6.18□□□□□ -1.42
VPS9D1Q9Y2B5 NCOA3-202ENST00000371998 4668 ntAPPRIS P4 TSL 1 (best) BASIC6.18□□□□□ -1.42
VPS9D1Q9Y2B5 ST3GAL3-212ENST00000372362 468 ntTSL 1 (best) BASIC6.18□□□□□ -1.42
VPS9D1Q9Y2B5 Y_RNA.570-201ENST00000384750 101 ntBASIC6.18□□□□□ -1.42
VPS9D1Q9Y2B5 AL035701.1-202ENST00000437249 371 ntTSL 3 BASIC6.18□□□□□ -1.42
VPS9D1Q9Y2B5 RPS15AP7-201ENST00000439294 405 ntBASIC6.18□□□□□ -1.42
VPS9D1Q9Y2B5 FCF1P8-201ENST00000510322 597 ntBASIC6.18□□□□□ -1.42
VPS9D1Q9Y2B5 RN7SKP258-201ENST00000517151 304 ntBASIC6.18□□□□□ -1.42
VPS9D1Q9Y2B5 ST3GAL3-232ENST00000531451 420 ntTSL 1 (best) BASIC6.18□□□□□ -1.42
VPS9D1Q9Y2B5 AC006206.2-202ENST00000537714 648 ntTSL 5 BASIC6.18□□□□□ -1.42
VPS9D1Q9Y2B5 AC104151.1-201ENST00000563764 323 ntAPPRIS P1 TSL 3 BASIC6.18□□□□□ -1.42
VPS9D1Q9Y2B5 AP001011.1-202ENST00000581172 667 ntTSL 3 BASIC6.18□□□□□ -1.42
VPS9D1Q9Y2B5 AC090616.3-201ENST00000582184 217 ntBASIC6.18□□□□□ -1.42
VPS9D1Q9Y2B5 SNORD91B-202ENST00000608459 222 ntBASIC6.18□□□□□ -1.42
VPS9D1Q9Y2B5 Metazoa_SRP.94-201ENST00000612609 250 ntBASIC6.18□□□□□ -1.42
VPS9D1Q9Y2B5 AL133342.1-201ENST00000618168 366 ntTSL 3 BASIC6.18□□□□□ -1.42
VPS9D1Q9Y2B5 LGALS13-204ENST00000621475 494 ntAPPRIS ALT2 TSL 5 BASIC6.18□□□□□ -1.42
VPS9D1Q9Y2B5 MIR6823-201ENST00000622118 61 ntBASIC6.18□□□□□ -1.42
VPS9D1Q9Y2B5 snoU18.1-201ENST00000629629 71 ntBASIC6.18□□□□□ -1.42
Retrieved 100 of 98,524 protein–RNA pairs in 111.8 ms