Protein–RNA interactions for Protein: Q9UPQ0

LIMCH1, LIM and calponin homology domains-containing protein 1, humanhuman

Predictions only

Length 1,083 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1Q9UPQ0 HSP90AA5P-201ENST00000438353 2192 ntBASIC4.58□□□□□ -1.68
LIMCH1Q9UPQ0 SERPINI2-209ENST00000616363 1769 ntTSL 5 BASIC4.58□□□□□ -1.68
LIMCH1Q9UPQ0 LIPI-201ENST00000344577 1652 ntAPPRIS P2 TSL 1 (best) BASIC4.58□□□□□ -1.68
LIMCH1Q9UPQ0 STK31-205ENST00000433467 3085 ntTSL 2 BASIC4.58□□□□□ -1.68
LIMCH1Q9UPQ0 AC024560.2-201ENST00000507981 1497 ntBASIC4.58□□□□□ -1.68
LIMCH1Q9UPQ0 FLG-AS1-205ENST00000445097 2857 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
LIMCH1Q9UPQ0 RNU6-1103P-201ENST00000384150 107 ntBASIC4.58□□□□□ -1.68
LIMCH1Q9UPQ0 Y_RNA.493-201ENST00000384422 102 ntBASIC4.58□□□□□ -1.68
LIMCH1Q9UPQ0 RPA3-203ENST00000401447 414 ntTSL 3 BASIC4.58□□□□□ -1.68
LIMCH1Q9UPQ0 AL078595.1-201ENST00000404458 226 ntBASIC4.58□□□□□ -1.68
LIMCH1Q9UPQ0 MTND1P21-201ENST00000412991 285 ntBASIC4.58□□□□□ -1.68
LIMCH1Q9UPQ0 AC007349.1-201ENST00000419326 587 ntTSL 4 BASIC4.58□□□□□ -1.68
LIMCH1Q9UPQ0 LINC01780-201ENST00000420059 442 ntTSL 2 BASIC4.58□□□□□ -1.68
LIMCH1Q9UPQ0 TEX41-204ENST00000423031 491 ntTSL 4 BASIC4.58□□□□□ -1.68
LIMCH1Q9UPQ0 LINC01934-202ENST00000424170 686 ntTSL 4 BASIC4.58□□□□□ -1.68
LIMCH1Q9UPQ0 USP9YP36-201ENST00000424581 829 ntBASIC4.58□□□□□ -1.68
LIMCH1Q9UPQ0 AL033539.1-201ENST00000427775 743 ntTSL 3 BASIC4.58□□□□□ -1.68
LIMCH1Q9UPQ0 AC010975.1-201ENST00000443301 669 ntTSL 3 BASIC4.58□□□□□ -1.68
LIMCH1Q9UPQ0 AC114485.1-201ENST00000447916 657 ntTSL 3 BASIC4.58□□□□□ -1.68
LIMCH1Q9UPQ0 FGF7P6-202ENST00000451282 293 ntBASIC4.58□□□□□ -1.68
LIMCH1Q9UPQ0 LINC01546-201ENST00000457435 674 ntTSL 2 BASIC4.58□□□□□ -1.68
LIMCH1Q9UPQ0 AC096554.1-201ENST00000458182 529 ntTSL 5 BASIC4.58□□□□□ -1.68
LIMCH1Q9UPQ0 AL139099.1-201ENST00000497398 403 ntBASIC4.58□□□□□ -1.68
LIMCH1Q9UPQ0 AC113167.1-201ENST00000512941 570 ntTSL 4 BASIC4.58□□□□□ -1.68
LIMCH1Q9UPQ0 Vault.3-201ENST00000516676 95 ntBASIC4.58□□□□□ -1.68
LIMCH1Q9UPQ0 NARSP2-201ENST00000518524 679 ntBASIC4.58□□□□□ -1.68
LIMCH1Q9UPQ0 AF117829.1-210ENST00000523859 696 ntTSL 3 BASIC4.58□□□□□ -1.68
LIMCH1Q9UPQ0 OR4R3P-201ENST00000525084 838 ntBASIC4.58□□□□□ -1.68
LIMCH1Q9UPQ0 OR4P1P-201ENST00000530808 1136 ntBASIC4.58□□□□□ -1.68
LIMCH1Q9UPQ0 AHI1-217ENST00000534469 680 ntTSL 3 BASIC4.58□□□□□ -1.68
LIMCH1Q9UPQ0 CCNG2P1-201ENST00000549521 1000 ntBASIC4.58□□□□□ -1.68
LIMCH1Q9UPQ0 LINC02286-201ENST00000552425 285 ntTSL 2 BASIC4.58□□□□□ -1.68
LIMCH1Q9UPQ0 NUFIP2-202ENST00000579665 559 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
LIMCH1Q9UPQ0 DLGAP1-AS4-201ENST00000582054 757 ntTSL 5 BASIC4.58□□□□□ -1.68
LIMCH1Q9UPQ0 MIR3939-201ENST00000582614 106 ntBASIC4.58□□□□□ -1.68
LIMCH1Q9UPQ0 ZNF562-205ENST00000587392 583 ntTSL 2 BASIC4.58□□□□□ -1.68
LIMCH1Q9UPQ0 ELOCP28-201ENST00000590044 317 ntBASIC4.58□□□□□ -1.68
LIMCH1Q9UPQ0 LLPHP1-201ENST00000603571 367 ntBASIC4.58□□□□□ -1.68
LIMCH1Q9UPQ0 AF250324.2-201ENST00000608299 610 ntBASIC4.58□□□□□ -1.68
LIMCH1Q9UPQ0 AL590099.1-201ENST00000615276 138 ntBASIC4.58□□□□□ -1.68
LIMCH1Q9UPQ0 AC099669.2-201ENST00000616549 437 ntBASIC4.58□□□□□ -1.68
LIMCH1Q9UPQ0 ZNF92-204ENST00000450302 2957 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
LIMCH1Q9UPQ0 DST-201ENST00000244364 16742 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
LIMCH1Q9UPQ0 FKTN-204ENST00000448551 1700 ntTSL 2 BASIC4.58□□□□□ -1.68
LIMCH1Q9UPQ0 ECT2-204ENST00000392692 4158 ntTSL 1 (best) BASIC4.57□□□□□ -1.68
LIMCH1Q9UPQ0 AC090229.1-201ENST00000590983 1609 ntBASIC4.57□□□□□ -1.68
LIMCH1Q9UPQ0 ZNF345-214ENST00000612719 2938 ntAPPRIS P1 TSL 4 BASIC4.57□□□□□ -1.68
LIMCH1Q9UPQ0 TMCO5A-203ENST00000558158 2894 ntAPPRIS ALT2 TSL 3 BASIC4.57□□□□□ -1.68
LIMCH1Q9UPQ0 ANKRD28-215ENST00000624145 6383 ntTSL 2 BASIC4.57□□□□□ -1.68
LIMCH1Q9UPQ0 MMS22L-202ENST00000369251 3949 ntTSL 2 BASIC4.57□□□□□ -1.68
LIMCH1Q9UPQ0 EPC1-203ENST00000375110 3909 ntTSL 1 (best) BASIC4.57□□□□□ -1.68
LIMCH1Q9UPQ0 FZD3-201ENST00000240093 13736 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
LIMCH1Q9UPQ0 RNU1-18P-201ENST00000363062 164 ntBASIC4.57□□□□□ -1.68
LIMCH1Q9UPQ0 MEIG1-201ENST00000378240 507 ntAPPRIS P1 TSL 2 BASIC4.57□□□□□ -1.68
LIMCH1Q9UPQ0 SNORA56-201ENST00000383966 129 ntBASIC4.57□□□□□ -1.68
LIMCH1Q9UPQ0 MIR199A2-201ENST00000385289 110 ntBASIC4.57□□□□□ -1.68
LIMCH1Q9UPQ0 MIR548F1-201ENST00000408667 84 ntBASIC4.57□□□□□ -1.68
LIMCH1Q9UPQ0 AC127391.1-201ENST00000411737 98 ntBASIC4.57□□□□□ -1.68
LIMCH1Q9UPQ0 FAM230B-202ENST00000415704 396 ntTSL 3 BASIC4.57□□□□□ -1.68
LIMCH1Q9UPQ0 MTND3P17-201ENST00000416968 344 ntBASIC4.57□□□□□ -1.68
LIMCH1Q9UPQ0 AC233728.2-201ENST00000425348 757 ntBASIC4.57□□□□□ -1.68
LIMCH1Q9UPQ0 AC064852.1-201ENST00000427571 851 ntTSL 3 BASIC4.57□□□□□ -1.68
LIMCH1Q9UPQ0 DPPA2P1-201ENST00000428060 556 ntBASIC4.57□□□□□ -1.68
LIMCH1Q9UPQ0 AC078845.1-202ENST00000435996 733 ntTSL 3 BASIC4.57□□□□□ -1.68
LIMCH1Q9UPQ0 PPIAP3-201ENST00000450588 505 ntBASIC4.57□□□□□ -1.68
LIMCH1Q9UPQ0 AL445524.1-204ENST00000454631 458 ntTSL 3 BASIC4.57□□□□□ -1.68
LIMCH1Q9UPQ0 UBDP1-202ENST00000457888 382 ntBASIC4.57□□□□□ -1.68
LIMCH1Q9UPQ0 RPL21P11-201ENST00000461458 483 ntBASIC4.57□□□□□ -1.68
LIMCH1Q9UPQ0 AC055855.1-201ENST00000489563 579 ntBASIC4.57□□□□□ -1.68
LIMCH1Q9UPQ0 TRBV12-2-201ENST00000489763 344 ntBASIC4.57□□□□□ -1.68
LIMCH1Q9UPQ0 ADGRL3-AS1-203ENST00000506704 606 ntTSL 5 BASIC4.57□□□□□ -1.68
LIMCH1Q9UPQ0 LINC02014-201ENST00000514010 713 ntTSL 3 BASIC4.57□□□□□ -1.68
LIMCH1Q9UPQ0 SUMO2P20-201ENST00000520803 283 ntBASIC4.57□□□□□ -1.68
LIMCH1Q9UPQ0 MRPL49P2-201ENST00000521066 465 ntBASIC4.57□□□□□ -1.68
LIMCH1Q9UPQ0 AC113192.1-201ENST00000527270 321 ntTSL 3 BASIC4.57□□□□□ -1.68
LIMCH1Q9UPQ0 DEFB130C-201ENST00000528518 237 ntTSL 1 (best) BASIC4.57□□□□□ -1.68
LIMCH1Q9UPQ0 AC133480.1-201ENST00000547563 381 ntTSL 3 BASIC4.57□□□□□ -1.68
LIMCH1Q9UPQ0 AC009396.3-201ENST00000555680 354 ntTSL 5 BASIC4.57□□□□□ -1.68
LIMCH1Q9UPQ0 AC025884.1-201ENST00000556034 378 ntBASIC4.57□□□□□ -1.68
LIMCH1Q9UPQ0 AC107954.1-201ENST00000565906 727 ntBASIC4.57□□□□□ -1.68
LIMCH1Q9UPQ0 AC023575.1-201ENST00000580510 358 ntBASIC4.57□□□□□ -1.68
LIMCH1Q9UPQ0 MIR3118-1-201ENST00000581787 76 ntBASIC4.57□□□□□ -1.68
LIMCH1Q9UPQ0 AC055876.5-201ENST00000605667 259 ntBASIC4.57□□□□□ -1.68
LIMCH1Q9UPQ0 BRDTP1-201ENST00000605735 677 ntBASIC4.57□□□□□ -1.68
LIMCH1Q9UPQ0 AL355472.4-201ENST00000610233 626 ntBASIC4.57□□□□□ -1.68
LIMCH1Q9UPQ0 AC090970.3-201ENST00000612566 866 ntBASIC4.57□□□□□ -1.68
LIMCH1Q9UPQ0 AL133173.2-201ENST00000614270 90 ntBASIC4.57□□□□□ -1.68
LIMCH1Q9UPQ0 AC092683.2-201ENST00000619740 621 ntTSL 3 BASIC4.57□□□□□ -1.68
LIMCH1Q9UPQ0 THOC1-220ENST00000621904 1083 ntTSL 5 BASIC4.57□□□□□ -1.68
LIMCH1Q9UPQ0 Metazoa_SRP.193-201ENST00000622007 277 ntBASIC4.57□□□□□ -1.68
LIMCH1Q9UPQ0 GOLT1B-210ENST00000631252 223 ntTSL 3 BASIC4.57□□□□□ -1.68
LIMCH1Q9UPQ0 MIR6863-201ENST00000636112 90 ntBASIC4.57□□□□□ -1.68
LIMCH1Q9UPQ0 SLITRK4-203ENST00000596188 8545 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
LIMCH1Q9UPQ0 HERC4-204ENST00000395198 4445 ntAPPRIS ALT1 TSL 1 (best) BASIC4.56□□□□□ -1.68
LIMCH1Q9UPQ0 NMD3P1-201ENST00000439704 1488 ntBASIC4.56□□□□□ -1.68
LIMCH1Q9UPQ0 AL589745.1-201ENST00000421190 3336 ntTSL 5 BASIC4.56□□□□□ -1.68
LIMCH1Q9UPQ0 AP001486.2-201ENST00000561652 5113 ntBASIC4.56□□□□□ -1.68
LIMCH1Q9UPQ0 PLAG1-201ENST00000316981 7322 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
LIMCH1Q9UPQ0 GPR34-201ENST00000378138 1815 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
LIMCH1Q9UPQ0 TCP11X1-203ENST00000623912 1715 ntTSL 5 BASIC4.56□□□□□ -1.68
Retrieved 100 of 98,524 protein–RNA pairs in 108.8 ms