Protein–RNA interactions for Protein: Q9UHB6

LIMA1, LIM domain and actin-binding protein 1, humanhuman

Known RBP Predictions only

Length 759 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1Q9UHB6 MIR7515HG-243ENST00000591400 1067 ntTSL 5 BASIC3.8□□□□□ -1.8
LIMA1Q9UHB6 AC008277.1-203ENST00000594921 1149 ntTSL 5 BASIC3.8□□□□□ -1.8
LIMA1Q9UHB6 AL022099.1-201ENST00000604551 712 ntBASIC3.8□□□□□ -1.8
LIMA1Q9UHB6 AL391497.1-201ENST00000608671 547 ntBASIC3.8□□□□□ -1.8
LIMA1Q9UHB6 AL392048.1-201ENST00000613946 534 ntBASIC3.8□□□□□ -1.8
LIMA1Q9UHB6 SUGT1-201ENST00000310528 14131 ntAPPRIS P3 TSL 1 (best) BASIC3.8□□□□□ -1.8
LIMA1Q9UHB6 ATM-203ENST00000452508 12954 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
LIMA1Q9UHB6 PTPN22-207ENST00000528414 3424 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
LIMA1Q9UHB6 HELZ-201ENST00000358691 13810 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
LIMA1Q9UHB6 AGL-206ENST00000370165 7106 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
LIMA1Q9UHB6 AL021368.2-201ENST00000606125 5352 ntBASIC3.8□□□□□ -1.8
LIMA1Q9UHB6 POLK-204ENST00000504026 1484 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
LIMA1Q9UHB6 SEL1L2-202ENST00000378072 1892 ntTSL 2 BASIC3.79□□□□□ -1.8
LIMA1Q9UHB6 AL158064.1-201ENST00000627044 2242 ntTSL 4 BASIC3.79□□□□□ -1.8
LIMA1Q9UHB6 GABPAP-201ENST00000419271 1356 ntBASIC3.79□□□□□ -1.8
LIMA1Q9UHB6 PCAT4-201ENST00000504263 2091 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
LIMA1Q9UHB6 PTPN22-211ENST00000538253 3575 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
LIMA1Q9UHB6 MBNL1-218ENST00000485910 4257 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
LIMA1Q9UHB6 QKI-202ENST00000361195 1063 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
LIMA1Q9UHB6 Y_RNA.97-201ENST00000363094 102 ntBASIC3.79□□□□□ -1.8
LIMA1Q9UHB6 RGS4-201ENST00000367906 930 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
LIMA1Q9UHB6 HSPE1P26-201ENST00000405341 275 ntBASIC3.79□□□□□ -1.8
LIMA1Q9UHB6 TPMTP3-201ENST00000411928 735 ntBASIC3.79□□□□□ -1.8
LIMA1Q9UHB6 AC093578.1-201ENST00000415219 368 ntBASIC3.79□□□□□ -1.8
LIMA1Q9UHB6 MTCO1P39-201ENST00000426148 480 ntBASIC3.79□□□□□ -1.8
LIMA1Q9UHB6 LINC00189-202ENST00000431661 308 ntTSL 5 BASIC3.79□□□□□ -1.8
LIMA1Q9UHB6 AC234775.1-201ENST00000454247 670 ntBASIC3.79□□□□□ -1.8
LIMA1Q9UHB6 AC010468.1-201ENST00000461022 817 ntBASIC3.79□□□□□ -1.8
LIMA1Q9UHB6 SETP11-201ENST00000473027 690 ntBASIC3.79□□□□□ -1.8
LIMA1Q9UHB6 RPL7P23-201ENST00000493874 747 ntBASIC3.79□□□□□ -1.8
LIMA1Q9UHB6 AC091906.1-201ENST00000511310 391 ntTSL 2 BASIC3.79□□□□□ -1.8
LIMA1Q9UHB6 LINC02315-201ENST00000515218 696 ntTSL 5 BASIC3.79□□□□□ -1.8
LIMA1Q9UHB6 RN7SKP289-201ENST00000517244 295 ntBASIC3.79□□□□□ -1.8
LIMA1Q9UHB6 AC103783.1-201ENST00000520506 373 ntBASIC3.79□□□□□ -1.8
LIMA1Q9UHB6 AP003781.1-201ENST00000543403 404 ntTSL 3 BASIC3.79□□□□□ -1.8
LIMA1Q9UHB6 GTF2IP22-201ENST00000554443 182 ntBASIC3.79□□□□□ -1.8
LIMA1Q9UHB6 AL352979.2-201ENST00000556988 366 ntTSL 3 BASIC3.79□□□□□ -1.8
LIMA1Q9UHB6 BNIP3P5-201ENST00000562290 498 ntBASIC3.79□□□□□ -1.8
LIMA1Q9UHB6 PCMTD1P2-201ENST00000565017 355 ntBASIC3.79□□□□□ -1.8
LIMA1Q9UHB6 AC109446.2-201ENST00000567872 497 ntBASIC3.79□□□□□ -1.8
LIMA1Q9UHB6 TMEM87A-212ENST00000568432 750 ntTSL 3 BASIC3.79□□□□□ -1.8
LIMA1Q9UHB6 MIR3915-201ENST00000578518 97 ntBASIC3.79□□□□□ -1.8
LIMA1Q9UHB6 AC006023.2-201ENST00000609916 167 ntBASIC3.79□□□□□ -1.8
LIMA1Q9UHB6 AC008443.7-201ENST00000622195 246 ntBASIC3.79□□□□□ -1.8
LIMA1Q9UHB6 AC007494.3-201ENST00000624660 743 ntBASIC3.79□□□□□ -1.8
LIMA1Q9UHB6 INPP4B-223ENST00000630044 354 ntTSL 5 BASIC3.79□□□□□ -1.8
LIMA1Q9UHB6 AC116096.1-201ENST00000566804 2314 ntBASIC3.79□□□□□ -1.8
LIMA1Q9UHB6 GABRG2-208ENST00000638552 3710 ntTSL 5 BASIC3.79□□□□□ -1.8
LIMA1Q9UHB6 MTCO1P9-201ENST00000505577 1534 ntBASIC3.79□□□□□ -1.8
LIMA1Q9UHB6 AL353746.1-201ENST00000566293 6881 ntBASIC3.79□□□□□ -1.8
LIMA1Q9UHB6 LINC00907-209ENST00000593234 3376 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
LIMA1Q9UHB6 STAU2-207ENST00000519961 3928 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
LIMA1Q9UHB6 BIRC3-206ENST00000532808 4238 ntAPPRIS P1 TSL 5 BASIC3.78□□□□□ -1.8
LIMA1Q9UHB6 CFHR4-201ENST00000251424 1292 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
LIMA1Q9UHB6 RNU6-501P-201ENST00000364072 100 ntBASIC3.78□□□□□ -1.8
LIMA1Q9UHB6 RNU6-114P-201ENST00000384704 105 ntBASIC3.78□□□□□ -1.8
LIMA1Q9UHB6 U8.14-201ENST00000390843 143 ntBASIC3.78□□□□□ -1.8
LIMA1Q9UHB6 U3.20-201ENST00000390909 217 ntBASIC3.78□□□□□ -1.8
LIMA1Q9UHB6 RNU2-43P-201ENST00000410306 190 ntBASIC3.78□□□□□ -1.8
LIMA1Q9UHB6 AC109780.2-201ENST00000413467 845 ntBASIC3.78□□□□□ -1.8
LIMA1Q9UHB6 CRYBB2P1-203ENST00000415709 538 ntBASIC3.78□□□□□ -1.8
LIMA1Q9UHB6 AC009299.3-201ENST00000421122 1072 ntTSL 3 BASIC3.78□□□□□ -1.8
LIMA1Q9UHB6 Z99497.1-201ENST00000421282 135 ntBASIC3.78□□□□□ -1.8
LIMA1Q9UHB6 RPS27AP14-201ENST00000422868 454 ntBASIC3.78□□□□□ -1.8
LIMA1Q9UHB6 AL157378.1-201ENST00000424506 265 ntTSL 5 BASIC3.78□□□□□ -1.8
LIMA1Q9UHB6 LINC01757-201ENST00000435552 480 ntTSL 2 BASIC3.78□□□□□ -1.8
LIMA1Q9UHB6 ATP2B2-IT1-201ENST00000440152 472 ntTSL 3 BASIC3.78□□□□□ -1.8
LIMA1Q9UHB6 FAM103A2P-201ENST00000444122 354 ntBASIC3.78□□□□□ -1.8
LIMA1Q9UHB6 RAC1P7-201ENST00000445367 377 ntBASIC3.78□□□□□ -1.8
LIMA1Q9UHB6 GPC6-AS2-201ENST00000445540 587 ntTSL 5 BASIC3.78□□□□□ -1.8
LIMA1Q9UHB6 AC239367.2-201ENST00000447309 705 ntBASIC3.78□□□□□ -1.8
LIMA1Q9UHB6 LINC01474-202ENST00000449235 628 ntTSL 3 BASIC3.78□□□□□ -1.8
LIMA1Q9UHB6 U3.44-201ENST00000458938 192 ntBASIC3.78□□□□□ -1.8
LIMA1Q9UHB6 RPL9P32-201ENST00000464118 620 ntBASIC3.78□□□□□ -1.8
LIMA1Q9UHB6 AC007537.2-201ENST00000472093 511 ntBASIC3.78□□□□□ -1.8
LIMA1Q9UHB6 MTND3P7-201ENST00000474435 343 ntBASIC3.78□□□□□ -1.8
LIMA1Q9UHB6 AP001086.1-201ENST00000494882 321 ntBASIC3.78□□□□□ -1.8
LIMA1Q9UHB6 CTD-2350J17.1-202ENST00000510456 360 ntTSL 2 BASIC3.78□□□□□ -1.8
LIMA1Q9UHB6 AC107934.2-201ENST00000518653 310 ntBASIC3.78□□□□□ -1.8
LIMA1Q9UHB6 NDST1-AS1-201ENST00000519040 368 ntTSL 2 BASIC3.78□□□□□ -1.8
LIMA1Q9UHB6 ARL6IP1P1-201ENST00000545836 610 ntBASIC3.78□□□□□ -1.8
LIMA1Q9UHB6 AC130415.1-201ENST00000547569 1010 ntTSL 4 BASIC3.78□□□□□ -1.8
LIMA1Q9UHB6 AC004024.1-201ENST00000549244 247 ntBASIC3.78□□□□□ -1.8
LIMA1Q9UHB6 AC123905.1-201ENST00000552098 541 ntTSL 4 BASIC3.78□□□□□ -1.8
LIMA1Q9UHB6 MIR4307-201ENST00000582802 84 ntBASIC3.78□□□□□ -1.8
LIMA1Q9UHB6 AP000403.1-201ENST00000603349 851 ntBASIC3.78□□□□□ -1.8
LIMA1Q9UHB6 AC121247.2-201ENST00000604776 136 ntBASIC3.78□□□□□ -1.8
LIMA1Q9UHB6 ABCC9-206ENST00000621589 450 ntTSL 5 BASIC3.78□□□□□ -1.8
LIMA1Q9UHB6 AC073172.1-201ENST00000636967 851 ntTSL 5 BASIC3.78□□□□□ -1.8
LIMA1Q9UHB6 C1orf141-202ENST00000371006 2053 ntAPPRIS P3 TSL 2 BASIC3.78□□□□□ -1.8
LIMA1Q9UHB6 KCNH7-204ENST00000618399 3713 ntTSL 5 BASIC3.78□□□□□ -1.8
LIMA1Q9UHB6 PKHD1L1-201ENST00000378402 13076 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
LIMA1Q9UHB6 UBE2W-203ENST00000517608 8426 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
LIMA1Q9UHB6 ASPN-201ENST00000375543 2237 ntTSL 2 BASIC3.78□□□□□ -1.8
LIMA1Q9UHB6 TFEC-203ENST00000393485 2704 ntTSL 2 BASIC3.78□□□□□ -1.8
LIMA1Q9UHB6 PTER-201ENST00000298942 3448 ntTSL 5 BASIC3.77□□□□□ -1.81
LIMA1Q9UHB6 ZNF83-201ENST00000301096 2599 ntAPPRIS P1 TSL 3 BASIC3.77□□□□□ -1.81
LIMA1Q9UHB6 ZNF479-201ENST00000319636 1811 ntAPPRIS P1 TSL 1 (best) BASIC3.77□□□□□ -1.81
LIMA1Q9UHB6 FAP-201ENST00000188790 2780 ntAPPRIS P2 TSL 1 (best) BASIC3.77□□□□□ -1.81
LIMA1Q9UHB6 TMPRSS11A-202ENST00000508048 3247 ntAPPRIS ALT2 TSL 1 (best) BASIC3.77□□□□□ -1.81
Retrieved 100 of 98,524 protein–RNA pairs in 81 ms