Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 AC017015.1-201ENST00000477387 286 ntBASIC3.14□□□□□ -1.91
LHX3Q9UBR4 TIPARP-AS1-202ENST00000478005 554 ntTSL 4 BASIC3.14□□□□□ -1.91
LHX3Q9UBR4 PGRMC2-204ENST00000503872 1028 ntTSL 3 BASIC3.14□□□□□ -1.91
LHX3Q9UBR4 AC010273.1-201ENST00000504129 946 ntTSL 5 BASIC3.14□□□□□ -1.91
LHX3Q9UBR4 RNA5SP217-201ENST00000515959 91 ntBASIC3.14□□□□□ -1.91
LHX3Q9UBR4 RNU6-1231P-201ENST00000517185 103 ntBASIC3.14□□□□□ -1.91
LHX3Q9UBR4 IGKV2-23-201ENST00000518729 323 ntBASIC3.14□□□□□ -1.91
LHX3Q9UBR4 AC105180.1-201ENST00000523317 426 ntTSL 3 BASIC3.14□□□□□ -1.91
LHX3Q9UBR4 AP001646.3-201ENST00000526305 446 ntTSL 2 BASIC3.14□□□□□ -1.91
LHX3Q9UBR4 AC027018.1-201ENST00000533978 396 ntTSL 4 BASIC3.14□□□□□ -1.91
LHX3Q9UBR4 RAP1B-224ENST00000541216 701 ntTSL 1 (best) BASIC3.14□□□□□ -1.91
LHX3Q9UBR4 SPIC-201ENST00000551346 1132 ntAPPRIS P1 TSL 1 (best) BASIC3.14□□□□□ -1.91
LHX3Q9UBR4 NBEAP1-201ENST00000554452 979 ntBASIC3.14□□□□□ -1.91
LHX3Q9UBR4 CYCSP2-201ENST00000558168 301 ntBASIC3.14□□□□□ -1.91
LHX3Q9UBR4 LINC02562-201ENST00000561705 785 ntTSL 2 BASIC3.14□□□□□ -1.91
LHX3Q9UBR4 AC046158.1-201ENST00000563408 719 ntTSL 3 BASIC3.14□□□□□ -1.91
LHX3Q9UBR4 AC018554.1-201ENST00000565506 800 ntTSL 2 BASIC3.14□□□□□ -1.91
LHX3Q9UBR4 AC009271.1-202ENST00000588803 492 ntTSL 3 BASIC3.14□□□□□ -1.91
LHX3Q9UBR4 TEX41-222ENST00000597173 1134 ntTSL 1 (best) BASIC3.14□□□□□ -1.91
LHX3Q9UBR4 AC006270.3-201ENST00000605967 1036 ntBASIC3.14□□□□□ -1.91
LHX3Q9UBR4 MIR663AHG-231ENST00000609044 590 ntTSL 5 BASIC3.14□□□□□ -1.91
LHX3Q9UBR4 AC106028.5-201ENST00000610332 395 ntBASIC3.14□□□□□ -1.91
LHX3Q9UBR4 AC097478.2-201ENST00000610572 514 ntBASIC3.14□□□□□ -1.91
LHX3Q9UBR4 TUG1_1.1-201ENST00000610654 145 ntBASIC3.14□□□□□ -1.91
LHX3Q9UBR4 AL591516.1-201ENST00000611326 274 ntBASIC3.14□□□□□ -1.91
LHX3Q9UBR4 AL356130.2-201ENST00000612554 404 ntTSL 3 BASIC3.14□□□□□ -1.91
LHX3Q9UBR4 AL110115.1-201ENST00000614396 364 ntBASIC3.14□□□□□ -1.91
LHX3Q9UBR4 AL357080.1-201ENST00000617394 239 ntBASIC3.14□□□□□ -1.91
LHX3Q9UBR4 AC006386.1-201ENST00000619436 415 ntBASIC3.14□□□□□ -1.91
LHX3Q9UBR4 AC013470.2-206ENST00000636804 771 ntAPPRIS P5 TSL 5 BASIC3.14□□□□□ -1.91
LHX3Q9UBR4 SCFD1-207ENST00000544052 2058 ntTSL 2 BASIC3.14□□□□□ -1.91
LHX3Q9UBR4 PMS1-215ENST00000447232 2576 ntTSL 2 BASIC3.14□□□□□ -1.91
LHX3Q9UBR4 ANKRD62P1-201ENST00000434304 1623 ntBASIC3.14□□□□□ -1.91
LHX3Q9UBR4 AC005539.1-201ENST00000443768 1479 ntBASIC3.14□□□□□ -1.91
LHX3Q9UBR4 SPZ1-201ENST00000296739 1868 ntAPPRIS P2 BASIC3.13□□□□□ -1.91
LHX3Q9UBR4 DPP10-205ENST00000410059 6278 ntAPPRIS ALT2 TSL 1 (best) BASIC3.13□□□□□ -1.91
LHX3Q9UBR4 RMDN2-205ENST00000407257 2280 ntTSL 5 BASIC3.13□□□□□ -1.91
LHX3Q9UBR4 TBC1D31-214ENST00000522420 3167 ntTSL 1 (best) BASIC3.13□□□□□ -1.91
LHX3Q9UBR4 AL022578.1-201ENST00000439330 1433 ntBASIC3.13□□□□□ -1.91
LHX3Q9UBR4 AC093010.3-201ENST00000570269 15214 ntBASIC3.13□□□□□ -1.91
LHX3Q9UBR4 SNORA72.3-201ENST00000365074 132 ntBASIC3.13□□□□□ -1.91
LHX3Q9UBR4 SNORD15B-201ENST00000384714 146 ntBASIC3.13□□□□□ -1.91
LHX3Q9UBR4 RNU6-882P-201ENST00000391025 103 ntBASIC3.13□□□□□ -1.91
LHX3Q9UBR4 RNU6-952P-201ENST00000391164 108 ntBASIC3.13□□□□□ -1.91
LHX3Q9UBR4 AL136372.1-201ENST00000403060 228 ntBASIC3.13□□□□□ -1.91
LHX3Q9UBR4 ERMN-204ENST00000409925 556 ntTSL 4 BASIC3.13□□□□□ -1.91
LHX3Q9UBR4 AL139421.1-201ENST00000423010 169 ntBASIC3.13□□□□□ -1.91
LHX3Q9UBR4 AL355340.1-201ENST00000433085 344 ntTSL 3 BASIC3.13□□□□□ -1.91
LHX3Q9UBR4 RPL23AP83-201ENST00000434984 473 ntBASIC3.13□□□□□ -1.91
LHX3Q9UBR4 COX7BP2-201ENST00000437976 242 ntBASIC3.13□□□□□ -1.91
LHX3Q9UBR4 AL606517.1-201ENST00000446914 387 ntBASIC3.13□□□□□ -1.91
LHX3Q9UBR4 AC092059.1-201ENST00000485347 429 ntTSL 3 BASIC3.13□□□□□ -1.91
LHX3Q9UBR4 AC099499.1-201ENST00000505040 558 ntTSL 3 BASIC3.13□□□□□ -1.91
LHX3Q9UBR4 AC093895.1-203ENST00000506814 591 ntTSL 5 BASIC3.13□□□□□ -1.91
LHX3Q9UBR4 MS4A13-204ENST00000527948 790 ntTSL 1 (best) BASIC3.13□□□□□ -1.91
LHX3Q9UBR4 AL160237.1-201ENST00000554526 572 ntTSL 4 BASIC3.13□□□□□ -1.91
LHX3Q9UBR4 AL391156.1-201ENST00000554965 554 ntBASIC3.13□□□□□ -1.91
LHX3Q9UBR4 AC107958.2-201ENST00000555396 592 ntTSL 3 BASIC3.13□□□□□ -1.91
LHX3Q9UBR4 AP001029.2-202ENST00000588197 739 ntTSL 3 BASIC3.13□□□□□ -1.91
LHX3Q9UBR4 AC245297.2-201ENST00000610119 565 ntBASIC3.13□□□□□ -1.91
LHX3Q9UBR4 AC013470.4-201ENST00000619978 986 ntBASIC3.13□□□□□ -1.91
LHX3Q9UBR4 AP001002.2-201ENST00000625137 386 ntBASIC3.13□□□□□ -1.91
LHX3Q9UBR4 SATB1-AS1-269ENST00000630766 591 ntTSL 5 BASIC3.13□□□□□ -1.91
LHX3Q9UBR4 EPS15-202ENST00000371730 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC3.13□□□□□ -1.91
LHX3Q9UBR4 RXFP1-201ENST00000307765 3842 ntAPPRIS P1 TSL 1 (best) BASIC3.13□□□□□ -1.91
LHX3Q9UBR4 LINC01416-201ENST00000563553 2310 ntTSL 1 (best) BASIC3.13□□□□□ -1.91
LHX3Q9UBR4 TDRD15-201ENST00000405799 6135 ntAPPRIS P1 TSL 2 BASIC3.12□□□□□ -1.91
LHX3Q9UBR4 PKHD1L1-201ENST00000378402 13076 ntAPPRIS P1 TSL 1 (best) BASIC3.12□□□□□ -1.91
LHX3Q9UBR4 YWHAZ-211ENST00000457309 3007 ntAPPRIS P1 TSL 2 BASIC3.12□□□□□ -1.91
LHX3Q9UBR4 THUMPD3P1-201ENST00000506556 1480 ntBASIC3.12□□□□□ -1.91
LHX3Q9UBR4 AC073325.2-201ENST00000339545 159 ntBASIC3.12□□□□□ -1.91
LHX3Q9UBR4 AC110754.1-201ENST00000399740 601 ntBASIC3.12□□□□□ -1.91
LHX3Q9UBR4 AL591034.1-201ENST00000407447 340 ntBASIC3.12□□□□□ -1.91
LHX3Q9UBR4 USP9YP33-201ENST00000412220 421 ntBASIC3.12□□□□□ -1.91
LHX3Q9UBR4 RPS15AP38-201ENST00000413110 372 ntBASIC3.12□□□□□ -1.91
LHX3Q9UBR4 AC010731.3-201ENST00000415029 566 ntTSL 4 BASIC3.12□□□□□ -1.91
LHX3Q9UBR4 AC245291.1-201ENST00000419501 328 ntBASIC3.12□□□□□ -1.91
LHX3Q9UBR4 RPL31P12-201ENST00000422587 358 ntBASIC3.12□□□□□ -1.91
LHX3Q9UBR4 AC006369.2-201ENST00000431712 384 ntTSL 3 BASIC3.12□□□□□ -1.91
LHX3Q9UBR4 AL138900.2-201ENST00000434098 156 ntTSL 3 BASIC3.12□□□□□ -1.91
LHX3Q9UBR4 USP9YP35-201ENST00000435696 412 ntBASIC3.12□□□□□ -1.91
LHX3Q9UBR4 MTCYBP34-201ENST00000439552 670 ntBASIC3.12□□□□□ -1.91
LHX3Q9UBR4 BX322784.1-201ENST00000455793 1077 ntBASIC3.12□□□□□ -1.91
LHX3Q9UBR4 RPS23P3-201ENST00000470993 430 ntBASIC3.12□□□□□ -1.91
LHX3Q9UBR4 RPL31P50-201ENST00000471002 296 ntBASIC3.12□□□□□ -1.91
LHX3Q9UBR4 AC108729.1-201ENST00000487812 947 ntBASIC3.12□□□□□ -1.91
LHX3Q9UBR4 AC010587.2-201ENST00000511727 448 ntBASIC3.12□□□□□ -1.91
LHX3Q9UBR4 AC010280.3-201ENST00000515504 587 ntTSL 4 BASIC3.12□□□□□ -1.91
LHX3Q9UBR4 RNU6-150P-201ENST00000516237 95 ntBASIC3.12□□□□□ -1.91
LHX3Q9UBR4 SNORA74D-201ENST00000516404 141 ntBASIC3.12□□□□□ -1.91
LHX3Q9UBR4 ELOC-204ENST00000519487 814 ntAPPRIS P1 TSL 2 BASIC3.12□□□□□ -1.91
LHX3Q9UBR4 AC078880.1-201ENST00000546696 553 ntTSL 4 BASIC3.12□□□□□ -1.91
LHX3Q9UBR4 LINC02286-201ENST00000552425 285 ntTSL 2 BASIC3.12□□□□□ -1.91
LHX3Q9UBR4 MED28P6-201ENST00000558776 231 ntBASIC3.12□□□□□ -1.91
LHX3Q9UBR4 TTN-AS1-213ENST00000584485 838 ntTSL 3 BASIC3.12□□□□□ -1.91
LHX3Q9UBR4 AC006539.2-201ENST00000601729 572 ntBASIC3.12□□□□□ -1.91
LHX3Q9UBR4 AC006254.3-201ENST00000603353 884 ntBASIC3.12□□□□□ -1.91
LHX3Q9UBR4 AL450336.1-201ENST00000605180 586 ntBASIC3.12□□□□□ -1.91
LHX3Q9UBR4 AC080013.3-201ENST00000606839 578 ntBASIC3.12□□□□□ -1.91
LHX3Q9UBR4 AL445264.1-201ENST00000621719 171 ntBASIC3.12□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 147.9 ms