Protein–RNA interactions for Protein: Q99715

COL12A1, Collagen alpha-1(XII) chain, humanhuman

Predictions only

Length 3,063 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1Q99715 AL450326.2-201ENST00000421913 1962 ntBASIC1.54□□□□□ -2.16
COL12A1Q99715 N4BP2L2-205ENST00000446957 2071 ntTSL 5 BASIC1.54□□□□□ -2.16
COL12A1Q99715 SLC9C2-201ENST00000367714 4428 ntAPPRIS P1 TSL 1 (best) BASIC1.54□□□□□ -2.16
COL12A1Q99715 RNU4-51P-201ENST00000364206 140 ntBASIC1.54□□□□□ -2.16
COL12A1Q99715 RNU6-1080P-201ENST00000383982 107 ntBASIC1.54□□□□□ -2.16
COL12A1Q99715 RNU6ATAC20P-201ENST00000408436 127 ntBASIC1.54□□□□□ -2.16
COL12A1Q99715 AC068295.1-201ENST00000413056 153 ntTSL 3 BASIC1.54□□□□□ -2.16
COL12A1Q99715 PAICSP7-201ENST00000419829 962 ntBASIC1.54□□□□□ -2.16
COL12A1Q99715 HMGB1P26-201ENST00000452520 628 ntBASIC1.54□□□□□ -2.16
COL12A1Q99715 AL162742.2-201ENST00000472915 244 ntTSL 5 BASIC1.54□□□□□ -2.16
COL12A1Q99715 LINC02514-201ENST00000509058 498 ntTSL 3 BASIC1.54□□□□□ -2.16
COL12A1Q99715 AC107393.1-201ENST00000512403 346 ntBASIC1.54□□□□□ -2.16
COL12A1Q99715 AL121821.2-201ENST00000556081 394 ntBASIC1.54□□□□□ -2.16
COL12A1Q99715 AC098848.2-201ENST00000588023 330 ntBASIC1.54□□□□□ -2.16
COL12A1Q99715 ARID2-206ENST00000457135 4356 ntTSL 1 (best) BASIC1.54□□□□□ -2.16
COL12A1Q99715 KTN1-207ENST00000438792 4449 ntAPPRIS ALT2 TSL 5 BASIC1.54□□□□□ -2.16
COL12A1Q99715 MIR6073-201ENST00000352083 89 ntBASIC1.53□□□□□ -2.16
COL12A1Q99715 ZMYM4-AS1-201ENST00000432683 459 ntTSL 2 BASIC1.53□□□□□ -2.16
COL12A1Q99715 AC244505.5-201ENST00000443639 207 ntBASIC1.53□□□□□ -2.16
COL12A1Q99715 SEPT7P3-201ENST00000455017 621 ntBASIC1.53□□□□□ -2.16
COL12A1Q99715 MTCO3P13-201ENST00000577757 781 ntBASIC1.53□□□□□ -2.16
COL12A1Q99715 AC243773.3-201ENST00000613270 256 ntBASIC1.53□□□□□ -2.16
COL12A1Q99715 RGS22-214ENST00000523287 4033 ntAPPRIS ALT2 TSL 2 BASIC1.53□□□□□ -2.16
COL12A1Q99715 SCN7A-201ENST00000409855 7183 ntAPPRIS P1 TSL 1 (best) BASIC1.53□□□□□ -2.16
COL12A1Q99715 SCN7A-206ENST00000619410 7186 ntAPPRIS P1 TSL 5 BASIC1.53□□□□□ -2.16
COL12A1Q99715 SCN7A-207ENST00000621965 7186 ntAPPRIS P1 TSL 5 BASIC1.53□□□□□ -2.16
COL12A1Q99715 KTN1-206ENST00000413890 4473 ntAPPRIS ALT2 TSL 5 BASIC1.53□□□□□ -2.16
COL12A1Q99715 RBBP6-202ENST00000348022 5739 ntTSL 1 (best) BASIC1.53□□□□□ -2.16
COL12A1Q99715 DEFB129-201ENST00000246105 698 ntAPPRIS P1 TSL 1 (best) BASIC1.53□□□□□ -2.16
COL12A1Q99715 OR6C65-201ENST00000379665 1076 ntAPPRIS P1 BASIC1.53□□□□□ -2.16
COL12A1Q99715 RNA5SP344-201ENST00000411081 104 ntBASIC1.53□□□□□ -2.16
COL12A1Q99715 AC011979.1-201ENST00000472300 483 ntBASIC1.53□□□□□ -2.16
COL12A1Q99715 RPL23AP44-201ENST00000482216 473 ntBASIC1.53□□□□□ -2.16
COL12A1Q99715 AC109464.2-201ENST00000510242 943 ntBASIC1.53□□□□□ -2.16
COL12A1Q99715 PARPBP-212ENST00000543784 992 ntTSL 2 BASIC1.53□□□□□ -2.16
COL12A1Q99715 AC090398.1-202ENST00000580403 457 ntTSL 2 BASIC1.53□□□□□ -2.16
COL12A1Q99715 ZGRF1-212ENST00000612287 2176 ntTSL 1 (best) BASIC1.53□□□□□ -2.16
COL12A1Q99715 UBE3A-225ENST00000636667 5726 ntTSL 5 BASIC1.53□□□□□ -2.16
COL12A1Q99715 GABRA2-209ENST00000510861 3411 ntAPPRIS P1 TSL 5 BASIC1.53□□□□□ -2.17
COL12A1Q99715 RNU1-93P-201ENST00000364704 169 ntBASIC1.53□□□□□ -2.17
COL12A1Q99715 RNU6-60P-201ENST00000364792 103 ntBASIC1.53□□□□□ -2.17
COL12A1Q99715 SNORA51.12-201ENST00000384448 134 ntBASIC1.53□□□□□ -2.17
COL12A1Q99715 SNORD88.1-201ENST00000408684 91 ntBASIC1.53□□□□□ -2.17
COL12A1Q99715 AC006159.2-201ENST00000421965 692 ntTSL 2 BASIC1.53□□□□□ -2.17
COL12A1Q99715 MIR4435-2HG-213ENST00000451884 423 ntTSL 3 BASIC1.53□□□□□ -2.17
COL12A1Q99715 AC111194.2-201ENST00000511222 455 ntTSL 5 BASIC1.53□□□□□ -2.17
COL12A1Q99715 SNORD53B-201ENST00000577887 78 ntBASIC1.53□□□□□ -2.17
COL12A1Q99715 AC103987.3-201ENST00000582071 292 ntBASIC1.53□□□□□ -2.17
COL12A1Q99715 AF165147.1-201ENST00000433310 6103 ntTSL 2 BASIC1.52□□□□□ -2.17
COL12A1Q99715 SPANXN3-201ENST00000370503 590 ntAPPRIS P1 TSL 1 (best) BASIC1.52□□□□□ -2.17
COL12A1Q99715 MRPL36-203ENST00000505818 595 ntAPPRIS P1 TSL 3 BASIC1.52□□□□□ -2.17
COL12A1Q99715 LINC01481-201ENST00000552998 629 ntTSL 2 BASIC1.52□□□□□ -2.17
COL12A1Q99715 MTATP6P3-201ENST00000581686 676 ntBASIC1.52□□□□□ -2.17
COL12A1Q99715 RN7SL793P-201ENST00000583259 296 ntBASIC1.52□□□□□ -2.17
COL12A1Q99715 AC006254.3-201ENST00000603353 884 ntBASIC1.52□□□□□ -2.17
COL12A1Q99715 AC010297.1-201ENST00000623948 149 ntBASIC1.52□□□□□ -2.17
COL12A1Q99715 CDC27P3-201ENST00000635418 1910 ntBASIC1.52□□□□□ -2.17
COL12A1Q99715 AL592437.2-201ENST00000421655 2434 ntBASIC1.52□□□□□ -2.17
COL12A1Q99715 DEFB109C-201ENST00000382575 264 ntBASIC1.52□□□□□ -2.17
COL12A1Q99715 DEFB109B-201ENST00000382656 264 ntBASIC1.52□□□□□ -2.17
COL12A1Q99715 STAT4-203ENST00000409995 709 ntTSL 5 BASIC1.52□□□□□ -2.17
COL12A1Q99715 AL353093.1-201ENST00000441292 436 ntBASIC1.52□□□□□ -2.17
COL12A1Q99715 AP000705.1-201ENST00000454567 350 ntBASIC1.52□□□□□ -2.17
COL12A1Q99715 AC008780.2-201ENST00000509844 820 ntTSL 2 BASIC1.52□□□□□ -2.17
COL12A1Q99715 SNORA70.14-201ENST00000516205 110 ntBASIC1.52□□□□□ -2.17
COL12A1Q99715 AL137100.2-201ENST00000555786 315 ntBASIC1.52□□□□□ -2.17
COL12A1Q99715 MSMB-201ENST00000581478 386 ntTSL 1 (best) BASIC1.52□□□□□ -2.17
COL12A1Q99715 AC087468.1-201ENST00000604365 630 ntBASIC1.52□□□□□ -2.17
COL12A1Q99715 BTG3-AS1-201ENST00000626994 552 ntTSL 4 BASIC1.52□□□□□ -2.17
COL12A1Q99715 NEB-219ENST00000604864 25578 ntAPPRIS ALT2 TSL 5 BASIC1.52□□□□□ -2.17
COL12A1Q99715 TRAPPC13-204ENST00000438419 1437 ntAPPRIS P4 TSL 1 (best) BASIC1.52□□□□□ -2.17
COL12A1Q99715 SAMD9L-201ENST00000318238 7134 ntAPPRIS P1 TSL 1 (best) BASIC1.52□□□□□ -2.17
COL12A1Q99715 AKAP9-202ENST00000358100 10309 ntTSL 1 (best) BASIC1.52□□□□□ -2.17
COL12A1Q99715 CHD1-201ENST00000284049 6457 ntAPPRIS P1 TSL 1 (best) BASIC1.52□□□□□ -2.17
COL12A1Q99715 EYS-202ENST00000342421 2168 ntTSL 1 (best) BASIC1.51□□□□□ -2.17
COL12A1Q99715 SRIP3-201ENST00000413200 219 ntBASIC1.51□□□□□ -2.17
COL12A1Q99715 AL683807.1-202ENST00000432272 382 ntTSL 2 BASIC1.51□□□□□ -2.17
COL12A1Q99715 DIAPH2-AS1-202ENST00000445414 606 ntTSL 2 BASIC1.51□□□□□ -2.17
COL12A1Q99715 AL441989.1-201ENST00000454204 382 ntTSL 3 BASIC1.51□□□□□ -2.17
COL12A1Q99715 AGBL4-IT1-201ENST00000457061 514 ntTSL 3 BASIC1.51□□□□□ -2.17
COL12A1Q99715 FAM92A1P1-201ENST00000528023 890 ntBASIC1.51□□□□□ -2.17
COL12A1Q99715 IGKV1-33-202ENST00000558152 324 ntAPPRIS ALT2 TSL 5 BASIC1.51□□□□□ -2.17
COL12A1Q99715 IGKV1D-33-202ENST00000611734 324 ntAPPRIS ALT2 TSL 5 BASIC1.51□□□□□ -2.17
COL12A1Q99715 AL353770.2-201ENST00000620024 78 ntBASIC1.51□□□□□ -2.17
COL12A1Q99715 PTPRQ-209ENST00000616559 8165 ntTSL 5 BASIC1.51□□□□□ -2.17
COL12A1Q99715 RNA5SP457-201ENST00000363657 124 ntBASIC1.51□□□□□ -2.17
COL12A1Q99715 SNORD6-201ENST00000365444 73 ntBASIC1.51□□□□□ -2.17
COL12A1Q99715 CTNNA2-204ENST00000409266 432 ntTSL 3 BASIC1.51□□□□□ -2.17
COL12A1Q99715 MAMDC2-AS1-203ENST00000420573 339 ntTSL 3 BASIC1.51□□□□□ -2.17
COL12A1Q99715 LINC01317-202ENST00000442026 677 ntTSL 3 BASIC1.51□□□□□ -2.17
COL12A1Q99715 USP9YP15-201ENST00000442391 422 ntBASIC1.51□□□□□ -2.17
COL12A1Q99715 LINC01474-202ENST00000449235 628 ntTSL 3 BASIC1.51□□□□□ -2.17
COL12A1Q99715 USP9YP10-201ENST00000454868 628 ntBASIC1.51□□□□□ -2.17
COL12A1Q99715 AC090753.1-201ENST00000522087 331 ntTSL 3 BASIC1.51□□□□□ -2.17
COL12A1Q99715 HMGB3P26-201ENST00000560051 582 ntBASIC1.51□□□□□ -2.17
COL12A1Q99715 CCDC14-221ENST00000489746 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC1.51□□□□□ -2.17
COL12A1Q99715 C1orf189-201ENST00000368525 387 ntAPPRIS P1 TSL 1 (best) BASIC1.51□□□□□ -2.17
COL12A1Q99715 AL022400.1-201ENST00000423946 935 ntBASIC1.51□□□□□ -2.17
COL12A1Q99715 COX6CP5-201ENST00000527162 228 ntBASIC1.51□□□□□ -2.17
COL12A1Q99715 AC025043.1-201ENST00000558047 625 ntTSL 2 BASIC1.51□□□□□ -2.17
Retrieved 100 of 98,524 protein–RNA pairs in 102.7 ms