Protein–RNA interactions for Protein: Q96RU2

USP28, Ubiquitin carboxyl-terminal hydrolase 28, humanhuman

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP28Q96RU2 AC080013.6-201ENST00000606185 215 ntBASIC3.52□□□□□ -1.85
USP28Q96RU2 VIS1.1-201ENST00000610517 203 ntBASIC3.52□□□□□ -1.85
USP28Q96RU2 AC005332.6-201ENST00000613178 446 ntBASIC3.52□□□□□ -1.85
USP28Q96RU2 MIR7975-201ENST00000619350 68 ntBASIC3.52□□□□□ -1.85
USP28Q96RU2 AC015967.1-201ENST00000619893 476 ntBASIC3.52□□□□□ -1.85
USP28Q96RU2 AL590227.1-201ENST00000622616 315 ntTSL 5 BASIC3.52□□□□□ -1.85
USP28Q96RU2 AL512506.2-201ENST00000624472 458 ntBASIC3.52□□□□□ -1.85
USP28Q96RU2 MUC7-202ENST00000413702 2540 ntAPPRIS P2 TSL 4 BASIC3.52□□□□□ -1.85
USP28Q96RU2 POLK-204ENST00000504026 1484 ntTSL 1 (best) BASIC3.52□□□□□ -1.85
USP28Q96RU2 DMD-203ENST00000357033 13956 ntAPPRIS P3 TSL 1 (best) BASIC3.52□□□□□ -1.85
USP28Q96RU2 RNU6-251P-201ENST00000363235 104 ntBASIC3.51□□□□□ -1.85
USP28Q96RU2 RNU1-85P-201ENST00000364127 164 ntBASIC3.51□□□□□ -1.85
USP28Q96RU2 RNU6-374P-201ENST00000364146 108 ntBASIC3.51□□□□□ -1.85
USP28Q96RU2 RNU6-921P-201ENST00000384361 107 ntBASIC3.51□□□□□ -1.85
USP28Q96RU2 RNU6-441P-201ENST00000384545 106 ntBASIC3.51□□□□□ -1.85
USP28Q96RU2 C1GALT1-202ENST00000402468 930 ntTSL 1 (best) BASIC3.51□□□□□ -1.85
USP28Q96RU2 MEIG1-202ENST00000407572 625 ntAPPRIS P1 TSL 2 BASIC3.51□□□□□ -1.85
USP28Q96RU2 TRBV24OR9-2-201ENST00000416632 435 ntBASIC3.51□□□□□ -1.85
USP28Q96RU2 GRM7-AS3-202ENST00000417482 454 ntTSL 3 BASIC3.51□□□□□ -1.85
USP28Q96RU2 AC090960.1-201ENST00000421072 306 ntBASIC3.51□□□□□ -1.85
USP28Q96RU2 AC006076.1-201ENST00000423233 345 ntTSL 3 BASIC3.51□□□□□ -1.85
USP28Q96RU2 AC234781.2-201ENST00000426370 994 ntBASIC3.51□□□□□ -1.85
USP28Q96RU2 AC004160.1-205ENST00000428967 577 ntTSL 4 BASIC3.51□□□□□ -1.85
USP28Q96RU2 AC005326.1-201ENST00000429197 123 ntBASIC3.51□□□□□ -1.85
USP28Q96RU2 MTND4P32-201ENST00000437189 1237 ntBASIC3.51□□□□□ -1.85
USP28Q96RU2 MTCYBP34-201ENST00000439552 670 ntBASIC3.51□□□□□ -1.85
USP28Q96RU2 AC016696.1-201ENST00000446949 318 ntBASIC3.51□□□□□ -1.85
USP28Q96RU2 PRDX3P3-201ENST00000447765 522 ntBASIC3.51□□□□□ -1.85
USP28Q96RU2 MAST4-AS1-201ENST00000451496 777 ntTSL 2 BASIC3.51□□□□□ -1.85
USP28Q96RU2 RPS27AP8-201ENST00000452665 445 ntBASIC3.51□□□□□ -1.85
USP28Q96RU2 BTF3P5-201ENST00000457252 467 ntBASIC3.51□□□□□ -1.85
USP28Q96RU2 MTND3P7-201ENST00000474435 343 ntBASIC3.51□□□□□ -1.85
USP28Q96RU2 AC093895.1-203ENST00000506814 591 ntTSL 5 BASIC3.51□□□□□ -1.85
USP28Q96RU2 LINC02364-201ENST00000514802 687 ntTSL 2 BASIC3.51□□□□□ -1.85
USP28Q96RU2 RPL12P22-201ENST00000519073 490 ntBASIC3.51□□□□□ -1.85
USP28Q96RU2 MTCO1P47-201ENST00000523889 1271 ntBASIC3.51□□□□□ -1.85
USP28Q96RU2 AC013509.1-201ENST00000524269 339 ntTSL 3 BASIC3.51□□□□□ -1.85
USP28Q96RU2 MRPL42-208ENST00000552217 920 ntAPPRIS P2 TSL 2 BASIC3.51□□□□□ -1.85
USP28Q96RU2 AC012379.1-201ENST00000558304 406 ntTSL 3 BASIC3.51□□□□□ -1.85
USP28Q96RU2 AC130371.1-204ENST00000576197 401 ntTSL 3 BASIC3.51□□□□□ -1.85
USP28Q96RU2 AC009220.3-201ENST00000604318 586 ntBASIC3.51□□□□□ -1.85
USP28Q96RU2 CLPTM1LP1-201ENST00000604519 484 ntBASIC3.51□□□□□ -1.85
USP28Q96RU2 AC245008.1-201ENST00000608123 476 ntBASIC3.51□□□□□ -1.85
USP28Q96RU2 AC099566.1-205ENST00000609411 657 ntTSL 5 BASIC3.51□□□□□ -1.85
USP28Q96RU2 AC008083.4-201ENST00000615076 444 ntBASIC3.51□□□□□ -1.85
USP28Q96RU2 AC138393.3-201ENST00000618397 573 ntTSL 3 BASIC3.51□□□□□ -1.85
USP28Q96RU2 AL603755.1-201ENST00000619504 163 ntBASIC3.51□□□□□ -1.85
USP28Q96RU2 AC079248.2-201ENST00000623779 326 ntBASIC3.51□□□□□ -1.85
USP28Q96RU2 AC018692.3-201ENST00000623929 123 ntBASIC3.51□□□□□ -1.85
USP28Q96RU2 AC120349.2-201ENST00000625002 298 ntBASIC3.51□□□□□ -1.85
USP28Q96RU2 AL136164.4-201ENST00000625013 2135 ntBASIC3.51□□□□□ -1.85
USP28Q96RU2 AC026634.1-201ENST00000634369 198 ntBASIC3.51□□□□□ -1.85
USP28Q96RU2 AP003399.1-201ENST00000637534 361 ntBASIC3.51□□□□□ -1.85
USP28Q96RU2 GPR18-203ENST00000397473 1660 ntAPPRIS P1 TSL 1 (best) BASIC3.51□□□□□ -1.85
USP28Q96RU2 GNAI3-201ENST00000369851 27174 ntAPPRIS P1 TSL 1 (best) BASIC3.51□□□□□ -1.85
USP28Q96RU2 RMDN2-205ENST00000407257 2280 ntTSL 5 BASIC3.51□□□□□ -1.85
USP28Q96RU2 SYT14-204ENST00000472886 2966 ntAPPRIS P3 TSL 1 (best) BASIC3.51□□□□□ -1.85
USP28Q96RU2 AL359893.1-201ENST00000447628 1580 ntBASIC3.51□□□□□ -1.85
USP28Q96RU2 UGT2B10-201ENST00000265403 1931 ntAPPRIS P1 TSL 1 (best) BASIC3.5□□□□□ -1.85
USP28Q96RU2 MTND5P27-201ENST00000428871 1720 ntBASIC3.5□□□□□ -1.85
USP28Q96RU2 CLCA4-201ENST00000370563 3211 ntAPPRIS P1 TSL 1 (best) BASIC3.5□□□□□ -1.85
USP28Q96RU2 DTHD1-205ENST00000507598 2606 ntTSL 1 (best) BASIC3.5□□□□□ -1.85
USP28Q96RU2 AC005539.1-201ENST00000443768 1479 ntBASIC3.5□□□□□ -1.85
USP28Q96RU2 CFHR4-201ENST00000251424 1292 ntTSL 1 (best) BASIC3.5□□□□□ -1.85
USP28Q96RU2 RNU6-931P-201ENST00000363850 107 ntBASIC3.5□□□□□ -1.85
USP28Q96RU2 5S_rRNA.1-201ENST00000364415 116 ntBASIC3.5□□□□□ -1.85
USP28Q96RU2 SNORD116-1-201ENST00000384335 95 ntBASIC3.5□□□□□ -1.85
USP28Q96RU2 MT-TC-201ENST00000387405 66 ntBASIC3.5□□□□□ -1.85
USP28Q96RU2 C1D-204ENST00000410067 736 ntAPPRIS P1 TSL 1 (best) BASIC3.5□□□□□ -1.85
USP28Q96RU2 RNA5SP129-201ENST00000410276 118 ntBASIC3.5□□□□□ -1.85
USP28Q96RU2 PIGPP2-201ENST00000411569 458 ntBASIC3.5□□□□□ -1.85
USP28Q96RU2 AC002456.1-203ENST00000412669 449 ntTSL 3 BASIC3.5□□□□□ -1.85
USP28Q96RU2 AL365203.2-201ENST00000423444 196 ntBASIC3.5□□□□□ -1.85
USP28Q96RU2 AC091862.1-201ENST00000438016 1100 ntBASIC3.5□□□□□ -1.85
USP28Q96RU2 RPL21P133-201ENST00000443666 476 ntBASIC3.5□□□□□ -1.85
USP28Q96RU2 AC109925.1-201ENST00000478069 331 ntBASIC3.5□□□□□ -1.85
USP28Q96RU2 AC012181.1-201ENST00000479895 423 ntBASIC3.5□□□□□ -1.85
USP28Q96RU2 LINC00888-204ENST00000487386 421 ntBASIC3.5□□□□□ -1.85
USP28Q96RU2 AL024509.2-201ENST00000493462 493 ntBASIC3.5□□□□□ -1.85
USP28Q96RU2 SUB1-203ENST00000502897 562 ntAPPRIS P1 TSL 4 BASIC3.5□□□□□ -1.85
USP28Q96RU2 MTCYBP17-201ENST00000503579 789 ntBASIC3.5□□□□□ -1.85
USP28Q96RU2 AC008629.1-202ENST00000504820 525 ntTSL 4 BASIC3.5□□□□□ -1.85
USP28Q96RU2 HMGB1P28-201ENST00000507778 552 ntBASIC3.5□□□□□ -1.85
USP28Q96RU2 AC105313.1-201ENST00000509121 353 ntBASIC3.5□□□□□ -1.85
USP28Q96RU2 RN7SKP43-201ENST00000516173 320 ntBASIC3.5□□□□□ -1.85
USP28Q96RU2 RNU6-232P-201ENST00000517144 64 ntBASIC3.5□□□□□ -1.85
USP28Q96RU2 AC109466.1-204ENST00000519570 717 ntTSL 3 BASIC3.5□□□□□ -1.85
USP28Q96RU2 AP003385.6-201ENST00000531603 374 ntBASIC3.5□□□□□ -1.85
USP28Q96RU2 AC022367.1-202ENST00000535066 537 ntTSL 3 BASIC3.5□□□□□ -1.85
USP28Q96RU2 AC073912.2-201ENST00000542821 317 ntTSL 3 BASIC3.5□□□□□ -1.85
USP28Q96RU2 REXO2-218ENST00000544827 880 ntTSL 3 BASIC3.5□□□□□ -1.85
USP28Q96RU2 AC090502.2-201ENST00000549267 280 ntBASIC3.5□□□□□ -1.85
USP28Q96RU2 AC091534.1-202ENST00000549953 468 ntTSL 5 BASIC3.5□□□□□ -1.85
USP28Q96RU2 AC074051.3-201ENST00000570238 358 ntBASIC3.5□□□□□ -1.85
USP28Q96RU2 AC011260.1-201ENST00000578420 472 ntBASIC3.5□□□□□ -1.85
USP28Q96RU2 AC243829.5-201ENST00000578447 247 ntTSL 5 BASIC3.5□□□□□ -1.85
USP28Q96RU2 AC104564.2-201ENST00000581240 270 ntTSL 3 BASIC3.5□□□□□ -1.85
USP28Q96RU2 AC009271.1-202ENST00000588803 492 ntTSL 3 BASIC3.5□□□□□ -1.85
USP28Q96RU2 AL606834.2-201ENST00000602954 668 ntBASIC3.5□□□□□ -1.85
USP28Q96RU2 AC121247.2-201ENST00000604776 136 ntBASIC3.5□□□□□ -1.85
Retrieved 100 of 98,524 protein–RNA pairs in 96 ms