Protein–RNA interactions for Protein: Q7Z3B4

NUP54, Nucleoporin p54, humanhuman

Predictions only

Length 507 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54Q7Z3B4 AL121766.1-201ENST00000547436 487 ntBASIC3.46□□□□□ -1.86
NUP54Q7Z3B4 AC009803.1-201ENST00000551531 416 ntTSL 3 BASIC3.46□□□□□ -1.86
NUP54Q7Z3B4 LINC02286-201ENST00000552425 285 ntTSL 2 BASIC3.46□□□□□ -1.86
NUP54Q7Z3B4 NDUFB1-204ENST00000555441 458 ntAPPRIS P1 TSL 3 BASIC3.46□□□□□ -1.86
NUP54Q7Z3B4 AC087499.8-201ENST00000578406 226 ntBASIC3.46□□□□□ -1.86
NUP54Q7Z3B4 LINC01905-206ENST00000593180 524 ntTSL 2 BASIC3.46□□□□□ -1.86
NUP54Q7Z3B4 DUXAP11-201ENST00000603858 526 ntBASIC3.46□□□□□ -1.86
NUP54Q7Z3B4 CLPTM1LP1-201ENST00000604519 484 ntBASIC3.46□□□□□ -1.86
NUP54Q7Z3B4 AP000676.3-201ENST00000623299 569 ntBASIC3.46□□□□□ -1.86
NUP54Q7Z3B4 AC091905.1-201ENST00000624400 311 ntBASIC3.46□□□□□ -1.86
NUP54Q7Z3B4 PCMTD1P7-201ENST00000634506 357 ntBASIC3.46□□□□□ -1.86
NUP54Q7Z3B4 TOP2A-201ENST00000423485 5758 ntAPPRIS P1 TSL 1 (best) BASIC3.46□□□□□ -1.86
NUP54Q7Z3B4 TMCO5A-203ENST00000558158 2894 ntAPPRIS ALT2 TSL 3 BASIC3.46□□□□□ -1.86
NUP54Q7Z3B4 KIAA1524-206ENST00000491772 3877 ntTSL 1 (best) BASIC3.45□□□□□ -1.86
NUP54Q7Z3B4 CCSER2-201ENST00000224756 7664 ntAPPRIS P1 TSL 5 BASIC3.45□□□□□ -1.86
NUP54Q7Z3B4 ZNF883-201ENST00000619044 2051 ntAPPRIS P1 TSL 5 BASIC3.45□□□□□ -1.86
NUP54Q7Z3B4 CCDC141-202ENST00000409284 6960 ntAPPRIS P2 TSL 1 (best) BASIC3.45□□□□□ -1.86
NUP54Q7Z3B4 VNN1-201ENST00000367928 3106 ntAPPRIS P1 TSL 1 (best) BASIC3.45□□□□□ -1.86
NUP54Q7Z3B4 CENPJ-205ENST00000545981 4299 ntTSL 2 BASIC3.45□□□□□ -1.86
NUP54Q7Z3B4 OR6C76-201ENST00000328314 939 ntAPPRIS P1 BASIC3.45□□□□□ -1.86
NUP54Q7Z3B4 Y_RNA.169-201ENST00000363745 96 ntBASIC3.45□□□□□ -1.86
NUP54Q7Z3B4 SNORA14A-201ENST00000364773 135 ntBASIC3.45□□□□□ -1.86
NUP54Q7Z3B4 RNU6-359P-201ENST00000365466 108 ntBASIC3.45□□□□□ -1.86
NUP54Q7Z3B4 TRAJ16-201ENST00000390521 60 ntAPPRIS P1 BASIC3.45□□□□□ -1.86
NUP54Q7Z3B4 SKINT1L-201ENST00000401057 817 ntBASIC3.45□□□□□ -1.86
NUP54Q7Z3B4 RNU6ATAC-201ENST00000408749 126 ntBASIC3.45□□□□□ -1.86
NUP54Q7Z3B4 RNU2-43P-201ENST00000410306 190 ntBASIC3.45□□□□□ -1.86
NUP54Q7Z3B4 RNU2-47P-201ENST00000410649 186 ntBASIC3.45□□□□□ -1.86
NUP54Q7Z3B4 CYCSP19-201ENST00000411715 316 ntBASIC3.45□□□□□ -1.86
NUP54Q7Z3B4 AL663023.1-201ENST00000412932 853 ntTSL 3 BASIC3.45□□□□□ -1.86
NUP54Q7Z3B4 AL390962.1-201ENST00000421507 526 ntTSL 3 BASIC3.45□□□□□ -1.86
NUP54Q7Z3B4 EIF1AX-AS1-201ENST00000424026 378 ntTSL 5 BASIC3.45□□□□□ -1.86
NUP54Q7Z3B4 AC107081.2-201ENST00000425779 802 ntTSL 5 BASIC3.45□□□□□ -1.86
NUP54Q7Z3B4 LINC01359-202ENST00000436350 710 ntTSL 3 BASIC3.45□□□□□ -1.86
NUP54Q7Z3B4 LINC00302-201ENST00000444515 302 ntTSL 1 (best) BASIC3.45□□□□□ -1.86
NUP54Q7Z3B4 ETV5-AS1-201ENST00000453370 560 ntTSL 4 BASIC3.45□□□□□ -1.86
NUP54Q7Z3B4 MTCO3P16-201ENST00000454456 754 ntBASIC3.45□□□□□ -1.86
NUP54Q7Z3B4 NDUFAF4P3-201ENST00000456468 525 ntBASIC3.45□□□□□ -1.86
NUP54Q7Z3B4 BZW1P2-201ENST00000473537 826 ntBASIC3.45□□□□□ -1.86
NUP54Q7Z3B4 AC106872.3-201ENST00000495104 446 ntBASIC3.45□□□□□ -1.86
NUP54Q7Z3B4 AL359273.1-203ENST00000506295 602 ntTSL 1 (best) BASIC3.45□□□□□ -1.86
NUP54Q7Z3B4 POU5F1P7-201ENST00000508759 541 ntBASIC3.45□□□□□ -1.86
NUP54Q7Z3B4 AL359273.1-201ENST00000510918 627 ntBASIC3.45□□□□□ -1.86
NUP54Q7Z3B4 AC131956.2-201ENST00000510922 512 ntTSL 3 BASIC3.45□□□□□ -1.86
NUP54Q7Z3B4 AC010468.2-201ENST00000511981 438 ntTSL 2 BASIC3.45□□□□□ -1.86
NUP54Q7Z3B4 RNU6-714P-201ENST00000516963 103 ntBASIC3.45□□□□□ -1.86
NUP54Q7Z3B4 AC103783.1-201ENST00000520506 373 ntBASIC3.45□□□□□ -1.86
NUP54Q7Z3B4 MTERF3-203ENST00000522822 1148 ntTSL 2 BASIC3.45□□□□□ -1.86
NUP54Q7Z3B4 RGS5-206ENST00000527988 373 ntTSL 1 (best) BASIC3.45□□□□□ -1.86
NUP54Q7Z3B4 CLEC7A-212ENST00000533022 625 ntTSL 1 (best) BASIC3.45□□□□□ -1.86
NUP54Q7Z3B4 AC022509.2-201ENST00000540392 699 ntTSL 3 BASIC3.45□□□□□ -1.86
NUP54Q7Z3B4 AL157955.1-201ENST00000554433 331 ntTSL 3 BASIC3.45□□□□□ -1.86
NUP54Q7Z3B4 AC090985.1-201ENST00000554440 480 ntTSL 2 BASIC3.45□□□□□ -1.86
NUP54Q7Z3B4 LINC02311-202ENST00000556819 477 ntTSL 3 BASIC3.45□□□□□ -1.86
NUP54Q7Z3B4 AC090888.1-201ENST00000561335 1141 ntBASIC3.45□□□□□ -1.86
NUP54Q7Z3B4 LINC02164-201ENST00000566684 272 ntTSL 3 BASIC3.45□□□□□ -1.86
NUP54Q7Z3B4 LINC01584-203ENST00000567231 646 ntTSL 5 BASIC3.45□□□□□ -1.86
NUP54Q7Z3B4 AC097467.3-208ENST00000593486 670 ntTSL 5 BASIC3.45□□□□□ -1.86
NUP54Q7Z3B4 AL133393.1-201ENST00000603277 287 ntBASIC3.45□□□□□ -1.86
NUP54Q7Z3B4 AL357094.1-201ENST00000603845 844 ntBASIC3.45□□□□□ -1.86
NUP54Q7Z3B4 AC099778.2-201ENST00000610904 211 ntBASIC3.45□□□□□ -1.86
NUP54Q7Z3B4 LINC02510-201ENST00000509798 1576 ntTSL 1 (best) BASIC3.45□□□□□ -1.86
NUP54Q7Z3B4 CEP170P1-201ENST00000502249 4587 ntBASIC3.45□□□□□ -1.86
NUP54Q7Z3B4 TET2-204ENST00000413648 4973 ntTSL 1 (best) BASIC3.45□□□□□ -1.86
NUP54Q7Z3B4 MS4A1-212ENST00000534668 3475 ntAPPRIS P1 TSL 2 BASIC3.45□□□□□ -1.86
NUP54Q7Z3B4 NEB-204ENST00000409198 20637 ntAPPRIS P3 TSL 5 BASIC3.45□□□□□ -1.86
NUP54Q7Z3B4 PROS1-203ENST00000407433 3335 ntTSL 1 (best) BASIC3.44□□□□□ -1.86
NUP54Q7Z3B4 MAP3K7-202ENST00000369325 4633 ntTSL 1 (best) BASIC3.44□□□□□ -1.86
NUP54Q7Z3B4 SLC8A1-207ENST00000406785 20987 ntTSL 1 (best) BASIC3.44□□□□□ -1.86
NUP54Q7Z3B4 PRKG2-206ENST00000545647 3852 ntTSL 5 BASIC3.44□□□□□ -1.86
NUP54Q7Z3B4 TRIQK-214ENST00000521988 3672 ntAPPRIS P1 TSL 1 (best) BASIC3.44□□□□□ -1.86
NUP54Q7Z3B4 PPP1R12A-204ENST00000546369 2977 ntTSL 2 BASIC3.44□□□□□ -1.86
NUP54Q7Z3B4 P2RY13-201ENST00000325602 2764 ntAPPRIS P1 TSL 1 (best) BASIC3.44□□□□□ -1.86
NUP54Q7Z3B4 AC233263.6-201ENST00000631132 1963 ntBASIC3.44□□□□□ -1.86
NUP54Q7Z3B4 AL672167.1-206ENST00000356293 943 ntBASIC3.44□□□□□ -1.86
NUP54Q7Z3B4 RNU6-744P-201ENST00000365557 107 ntBASIC3.44□□□□□ -1.86
NUP54Q7Z3B4 RNU6-1316P-201ENST00000384242 108 ntBASIC3.44□□□□□ -1.86
NUP54Q7Z3B4 RNY3P9-201ENST00000384727 106 ntBASIC3.44□□□□□ -1.86
NUP54Q7Z3B4 MIR1305-201ENST00000408300 86 ntBASIC3.44□□□□□ -1.86
NUP54Q7Z3B4 SNX10-203ENST00000409367 746 ntTSL 5 BASIC3.44□□□□□ -1.86
NUP54Q7Z3B4 PSMA4-202ENST00000413382 1019 ntTSL 1 (best) BASIC3.44□□□□□ -1.86
NUP54Q7Z3B4 CCDC58P2-201ENST00000417131 366 ntBASIC3.44□□□□□ -1.86
NUP54Q7Z3B4 AL645937.4-201ENST00000419702 389 ntTSL 2 BASIC3.44□□□□□ -1.86
NUP54Q7Z3B4 MTND2P18-201ENST00000419962 1030 ntBASIC3.44□□□□□ -1.86
NUP54Q7Z3B4 AL591475.1-201ENST00000429060 489 ntTSL 2 BASIC3.44□□□□□ -1.86
NUP54Q7Z3B4 AL365396.1-201ENST00000430854 671 ntBASIC3.44□□□□□ -1.86
NUP54Q7Z3B4 AC092598.1-201ENST00000431708 797 ntTSL 3 BASIC3.44□□□□□ -1.86
NUP54Q7Z3B4 ATP2B2-IT1-201ENST00000440152 472 ntTSL 3 BASIC3.44□□□□□ -1.86
NUP54Q7Z3B4 NOTCH2P1-201ENST00000443481 624 ntBASIC3.44□□□□□ -1.86
NUP54Q7Z3B4 RAC1P7-201ENST00000445367 377 ntBASIC3.44□□□□□ -1.86
NUP54Q7Z3B4 UBDP1-202ENST00000457888 382 ntBASIC3.44□□□□□ -1.86
NUP54Q7Z3B4 AC108860.1-201ENST00000484521 383 ntBASIC3.44□□□□□ -1.86
NUP54Q7Z3B4 HMGB1P36-201ENST00000487709 576 ntBASIC3.44□□□□□ -1.86
NUP54Q7Z3B4 AC112198.1-201ENST00000505369 1220 ntBASIC3.44□□□□□ -1.86
NUP54Q7Z3B4 AC022447.3-201ENST00000506865 495 ntBASIC3.44□□□□□ -1.86
NUP54Q7Z3B4 AC005178.1-201ENST00000508392 440 ntBASIC3.44□□□□□ -1.86
NUP54Q7Z3B4 HMGN1P11-201ENST00000508668 303 ntBASIC3.44□□□□□ -1.86
NUP54Q7Z3B4 AC034159.1-201ENST00000513885 583 ntBASIC3.44□□□□□ -1.86
NUP54Q7Z3B4 AC119751.5-201ENST00000514077 770 ntBASIC3.44□□□□□ -1.86
NUP54Q7Z3B4 AL137804.1-201ENST00000528872 576 ntTSL 3 BASIC3.44□□□□□ -1.86
Retrieved 100 of 98,524 protein–RNA pairs in 195.8 ms