Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 AC008958.1-201ENST00000511047 682 ntBASIC4.11□□□□□ -1.75
PTCHD3Q3KNS1 AC016550.2-202ENST00000511940 581 ntTSL 2 BASIC4.11□□□□□ -1.75
PTCHD3Q3KNS1 AC124854.1-202ENST00000513779 339 ntTSL 3 BASIC4.11□□□□□ -1.75
PTCHD3Q3KNS1 RNA5SP49-201ENST00000516450 115 ntBASIC4.11□□□□□ -1.75
PTCHD3Q3KNS1 RNA5SP519-201ENST00000516480 119 ntBASIC4.11□□□□□ -1.75
PTCHD3Q3KNS1 AP003718.1-201ENST00000529884 583 ntTSL 4 BASIC4.11□□□□□ -1.75
PTCHD3Q3KNS1 KIRREL3-AS2-201ENST00000532988 492 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
PTCHD3Q3KNS1 HOMER1-205ENST00000535690 642 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
PTCHD3Q3KNS1 SNHG1-208ENST00000538266 347 ntTSL 3 BASIC4.11□□□□□ -1.75
PTCHD3Q3KNS1 CR383656.7-201ENST00000548164 174 ntBASIC4.11□□□□□ -1.75
PTCHD3Q3KNS1 AC128707.1-201ENST00000552230 494 ntTSL 3 BASIC4.11□□□□□ -1.75
PTCHD3Q3KNS1 LINC01584-202ENST00000563990 852 ntTSL 3 BASIC4.11□□□□□ -1.75
PTCHD3Q3KNS1 AC068135.2-201ENST00000569293 1028 ntBASIC4.11□□□□□ -1.75
PTCHD3Q3KNS1 MIR3160-1-201ENST00000577972 85 ntBASIC4.11□□□□□ -1.75
PTCHD3Q3KNS1 LINC01630-204ENST00000582689 539 ntTSL 4 BASIC4.11□□□□□ -1.75
PTCHD3Q3KNS1 DSCR9-205ENST00000585273 751 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
PTCHD3Q3KNS1 AC006504.3-201ENST00000586818 523 ntBASIC4.11□□□□□ -1.75
PTCHD3Q3KNS1 AC015911.9-201ENST00000591634 185 ntTSL 5 BASIC4.11□□□□□ -1.75
PTCHD3Q3KNS1 AC012507.3-201ENST00000603556 477 ntBASIC4.11□□□□□ -1.75
PTCHD3Q3KNS1 AC104458.1-201ENST00000608243 463 ntBASIC4.11□□□□□ -1.75
PTCHD3Q3KNS1 CERS6-AS1-209ENST00000609766 642 ntTSL 5 BASIC4.11□□□□□ -1.75
PTCHD3Q3KNS1 AC245517.5-201ENST00000611529 162 ntBASIC4.11□□□□□ -1.75
PTCHD3Q3KNS1 CLCA3P-202ENST00000466454 3412 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
PTCHD3Q3KNS1 RAPGEF6-201ENST00000296859 5618 ntAPPRIS ALT2 TSL 1 (best) BASIC4.11□□□□□ -1.75
PTCHD3Q3KNS1 GABRB2-203ENST00000393959 7191 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
PTCHD3Q3KNS1 MACF1-231ENST00000564288 24828 ntAPPRIS ALT2 TSL 5 BASIC4.11□□□□□ -1.75
PTCHD3Q3KNS1 LARP1BP1-201ENST00000506036 1359 ntBASIC4.11□□□□□ -1.75
PTCHD3Q3KNS1 PLCB1-233ENST00000637919 5074 ntTSL 5 BASIC4.11□□□□□ -1.75
PTCHD3Q3KNS1 ZMYND11-217ENST00000627286 3914 ntTSL 5 BASIC4.11□□□□□ -1.75
PTCHD3Q3KNS1 AL049830.3-201ENST00000555108 1991 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
PTCHD3Q3KNS1 ZNF43-210ENST00000598381 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC4.11□□□□□ -1.75
PTCHD3Q3KNS1 AC010186.3-201ENST00000537616 2508 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
PTCHD3Q3KNS1 AC244517.1-201ENST00000606030 2086 ntBASIC4.1□□□□□ -1.75
PTCHD3Q3KNS1 KCNU1-201ENST00000399881 3695 ntAPPRIS P1 TSL 2 BASIC4.1□□□□□ -1.75
PTCHD3Q3KNS1 ZNF66-201ENST00000344519 1745 ntAPPRIS P1 TSL 3 BASIC4.1□□□□□ -1.75
PTCHD3Q3KNS1 MTND5P3-201ENST00000438536 1800 ntBASIC4.1□□□□□ -1.75
PTCHD3Q3KNS1 PKIB-202ENST00000354275 1043 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
PTCHD3Q3KNS1 Y_RNA.88-201ENST00000363029 99 ntBASIC4.1□□□□□ -1.75
PTCHD3Q3KNS1 RNU6-1085P-201ENST00000363576 107 ntBASIC4.1□□□□□ -1.75
PTCHD3Q3KNS1 RNU6-1097P-201ENST00000363586 107 ntBASIC4.1□□□□□ -1.75
PTCHD3Q3KNS1 RNU6-169P-201ENST00000365336 107 ntBASIC4.1□□□□□ -1.75
PTCHD3Q3KNS1 RNU6-108P-201ENST00000365558 107 ntBASIC4.1□□□□□ -1.75
PTCHD3Q3KNS1 Y_RNA.573-201ENST00000384763 105 ntBASIC4.1□□□□□ -1.75
PTCHD3Q3KNS1 RNU2-47P-201ENST00000410649 186 ntBASIC4.1□□□□□ -1.75
PTCHD3Q3KNS1 AC005162.2-201ENST00000411479 578 ntTSL 4 BASIC4.1□□□□□ -1.75
PTCHD3Q3KNS1 AL138826.1-202ENST00000415106 692 ntAPPRIS P1 TSL 2 BASIC4.1□□□□□ -1.75
PTCHD3Q3KNS1 RPL35AP22-201ENST00000436855 335 ntBASIC4.1□□□□□ -1.75
PTCHD3Q3KNS1 RPL23AP89-201ENST00000439324 255 ntBASIC4.1□□□□□ -1.75
PTCHD3Q3KNS1 AL353572.1-201ENST00000442490 417 ntBASIC4.1□□□□□ -1.75
PTCHD3Q3KNS1 RPL21P89-201ENST00000444021 467 ntBASIC4.1□□□□□ -1.75
PTCHD3Q3KNS1 AC114755.5-201ENST00000447760 831 ntBASIC4.1□□□□□ -1.75
PTCHD3Q3KNS1 RPS17P13-201ENST00000448974 407 ntBASIC4.1□□□□□ -1.75
PTCHD3Q3KNS1 AL391427.1-201ENST00000451575 425 ntTSL 3 BASIC4.1□□□□□ -1.75
PTCHD3Q3KNS1 AC011998.3-201ENST00000457053 254 ntTSL 3 BASIC4.1□□□□□ -1.75
PTCHD3Q3KNS1 RNU7-59P-201ENST00000459101 61 ntBASIC4.1□□□□□ -1.75
PTCHD3Q3KNS1 AC092944.1-205ENST00000494885 517 ntTSL 4 BASIC4.1□□□□□ -1.75
PTCHD3Q3KNS1 FCF1P3-201ENST00000496394 590 ntBASIC4.1□□□□□ -1.75
PTCHD3Q3KNS1 AC090673.1-204ENST00000504038 977 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
PTCHD3Q3KNS1 AC010255.1-201ENST00000504829 731 ntTSL 5 BASIC4.1□□□□□ -1.75
PTCHD3Q3KNS1 AC004704.1-201ENST00000511219 583 ntTSL 3 BASIC4.1□□□□□ -1.75
PTCHD3Q3KNS1 FTH1P21-201ENST00000512179 511 ntBASIC4.1□□□□□ -1.75
PTCHD3Q3KNS1 LINC00491-204ENST00000513815 582 ntTSL 4 BASIC4.1□□□□□ -1.75
PTCHD3Q3KNS1 LINC02061-201ENST00000514225 335 ntTSL 3 BASIC4.1□□□□□ -1.75
PTCHD3Q3KNS1 RNA5SP337-201ENST00000517007 109 ntBASIC4.1□□□□□ -1.75
PTCHD3Q3KNS1 AP003469.3-201ENST00000518090 473 ntTSL 3 BASIC4.1□□□□□ -1.75
PTCHD3Q3KNS1 AC099554.1-201ENST00000520032 572 ntTSL 3 BASIC4.1□□□□□ -1.75
PTCHD3Q3KNS1 AC103783.1-201ENST00000520506 373 ntBASIC4.1□□□□□ -1.75
PTCHD3Q3KNS1 IFITM8P-201ENST00000522529 394 ntBASIC4.1□□□□□ -1.75
PTCHD3Q3KNS1 AC092745.2-201ENST00000537764 620 ntTSL 3 BASIC4.1□□□□□ -1.75
PTCHD3Q3KNS1 AC026116.1-201ENST00000551729 474 ntTSL 3 BASIC4.1□□□□□ -1.75
PTCHD3Q3KNS1 ARL1-211ENST00000551828 776 ntTSL 5 BASIC4.1□□□□□ -1.75
PTCHD3Q3KNS1 AL160191.1-201ENST00000555480 566 ntTSL 4 BASIC4.1□□□□□ -1.75
PTCHD3Q3KNS1 AL391646.1-201ENST00000603860 190 ntBASIC4.1□□□□□ -1.75
PTCHD3Q3KNS1 AL031176.1-201ENST00000604554 466 ntBASIC4.1□□□□□ -1.75
PTCHD3Q3KNS1 AC008277.2-201ENST00000605196 797 ntBASIC4.1□□□□□ -1.75
PTCHD3Q3KNS1 AL591034.3-201ENST00000605511 685 ntBASIC4.1□□□□□ -1.75
PTCHD3Q3KNS1 AC007038.2-201ENST00000608095 740 ntBASIC4.1□□□□□ -1.75
PTCHD3Q3KNS1 AC064801.1-201ENST00000612025 407 ntBASIC4.1□□□□□ -1.75
PTCHD3Q3KNS1 FAM27D1-201ENST00000612308 341 ntBASIC4.1□□□□□ -1.75
PTCHD3Q3KNS1 AC112204.3-201ENST00000623822 332 ntBASIC4.1□□□□□ -1.75
PTCHD3Q3KNS1 AC005609.4-201ENST00000625071 447 ntBASIC4.1□□□□□ -1.75
PTCHD3Q3KNS1 AL589740.1-204ENST00000634677 630 ntTSL 4 BASIC4.1□□□□□ -1.75
PTCHD3Q3KNS1 AC244258.1-201ENST00000637553 1071 ntBASIC4.1□□□□□ -1.75
PTCHD3Q3KNS1 LRRC77P-213ENST00000637727 880 ntBASIC4.1□□□□□ -1.75
PTCHD3Q3KNS1 DMD-230ENST00000620040 13746 ntAPPRIS ALT2 TSL 5 BASIC4.1□□□□□ -1.75
PTCHD3Q3KNS1 NPSR1-AS1-205ENST00000436945 1406 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
PTCHD3Q3KNS1 AJ009632.2-204ENST00000635621 1401 ntTSL 5 BASIC4.1□□□□□ -1.75
PTCHD3Q3KNS1 GPBP1-204ENST00000506184 2857 ntAPPRIS P3 TSL 1 (best) BASIC4.1□□□□□ -1.75
PTCHD3Q3KNS1 ASAH1-265ENST00000637922 2297 ntTSL 5 BASIC4.1□□□□□ -1.75
PTCHD3Q3KNS1 NPFFR2-203ENST00000358749 1559 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
PTCHD3Q3KNS1 CCDC178-204ENST00000403303 3354 ntAPPRIS ALT2 TSL 1 (best) BASIC4.1□□□□□ -1.75
PTCHD3Q3KNS1 SLC26A7-209ENST00000617078 5094 ntTSL 5 BASIC4.1□□□□□ -1.75
PTCHD3Q3KNS1 CFTR-201ENST00000003084 6132 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.75
PTCHD3Q3KNS1 NOL8P1-201ENST00000508336 3529 ntBASIC4.09□□□□□ -1.75
PTCHD3Q3KNS1 ZNF480-202ENST00000335090 2722 ntTSL 3 BASIC4.09□□□□□ -1.75
PTCHD3Q3KNS1 C2orf16-202ENST00000447166 16401 ntAPPRIS ALT2 TSL 3 BASIC4.09□□□□□ -1.75
PTCHD3Q3KNS1 SLC16A7-201ENST00000261187 11777 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.75
PTCHD3Q3KNS1 OR8G1-201ENST00000341493 936 ntAPPRIS P1 BASIC4.09□□□□□ -1.75
PTCHD3Q3KNS1 Y_RNA.256-201ENST00000364594 104 ntBASIC4.09□□□□□ -1.75
PTCHD3Q3KNS1 KLRC3-201ENST00000381903 798 ntAPPRIS P3 TSL 1 (best) BASIC4.09□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 83 ms